Jesper Velgaard Olsen

Jesper Velgaard Olsen

Professor, Deputy Head of Centre, Professor

Member of:

    ORCID: 0000-0002-4747-4938

    Publication year:
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    1 - 100 out of 262Page size: 100
    1. 2000

    2. Electron capture dissociation of singly and multiply phosphorylated peptides

      Stensballe, A., Jensen, O. N., Olsen, Jesper Velgaard, Haselmann, K. F. & Zubarev, R. A., 2000, In: Rapid Communications in Mass Spectrometry. 14, 19, p. 1793-800 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Intramolecular hydrogen atom transfer in hydrogen-deficient polypeptide radical cations

      Nielsen, Michael Lund, Budnik, B. A., Haselmann, K. F., Olsen, Jesper Velgaard & Zubarev, R. A., 2000, In: Chemical Physics Letters. 330, 5-6, p. 558-562 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. 2001

    5. Advantages of external accumulation for electron capture dissociation in Fourier transform mass spectrometry

      Haselmann, K. F., Budnik, B. A., Olsen, Jesper Velgaard, Nielsen, Michael Lund, Reis, C. A., Clausen, H., Johnsen, A. H. & Zubarev, R. A., 2001, In: Analytical Chemistry. 73, 13, p. 2998-3005 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Comparison of electron capture dissociation and collisionally activated dissociation of polycations of peptide nucleic acids

      Olsen, Jesper Velgaard, Haselmann, K. F., Nielsen, Michael Lund, Budnik, B. A., Nielsen, P. E. & Zubarev, R. A., 2001, In: Rapid Communications in Mass Spectrometry. 15, 12, p. 969-74 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. 2002

    8. Can relative cleavage frequencies in peptides provide additional sequence information?

      Budnik, B. A., Nielsen, Michael Lund, Olsen, Jesper Velgaard, Haselmann, K. F., Horth, P., Haehnel, W. & Zubarev, R. A., 2002, In: International Journal of Mass Spectrometry. 219, 1, p. 283-294 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Electronic excitation gives informative fragmentation of polypeptide cations and anions

      Haselmann, K. F., Budnik, B. A., Kjeldsen, F., Nielsen, Michael Lund, Olsen, Jesper Velgaard & Zubarev, R. A., 2002, In: European Journal of Mass Spectrometry. 8, 2, p. 117-121 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. 2003

    11. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

      Mootha, V. K., Bunkenborg, J., Olsen, Jesper Velgaard, Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., Patterson, N., Lander, E. S. & Mann, Matthias, 2003, In: Cell. 115, 5, p. 629-40 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry

      Hinsby, A. M., Olsen, Jesper Velgaard, Bennett, K. L. & Mann, Matthias, 2003, In: Molecular and Cellular Proteomics. 2, 1, p. 29-36 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. 2004

    14. De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis

      Budnik, B. A., Olsen, Jesper Velgaard, Egorov, T. A., Anisimova, V. E., Galkina, T. G., Musolyamov, A. K., Grishin, E. V. & Zubarev, R. A., 2004, In: Journal of Mass Spectrometry. 39, 2, p. 193-201 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

      Olsen, Jesper Velgaard & Mann, Matthias, 2004, In: Proceedings of the National Academy of Science of the United States of America. 101, 37, p. 13417-22 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Trypsin cleaves exclusively C-terminal to arginine and lysine residues

      Olsen, Jesper Velgaard, Ong, S. & Mann, Matthias, 2004, In: Molecular and Cellular Proteomics. 3, 6, p. 608-14 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4

      Hinsby, A. M., Olsen, Jesper Velgaard & Mann, Matthias, 2004, In: Journal of Biological Chemistry. 279, 45, p. 46438-47 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain

      Olsen, Jesper Velgaard, Andersen, J. R., Nielsen, P. A., Nielsen, Michael Lund, Figeys, D., Mann, Matthias & Wisniewski, J. R., Jan 2004, In: Molecular and Cellular Proteomics. 3, 1, p. 82-92 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. 2005

    20. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

      Olsen, Jesper Velgaard, de Godoy, L. M. F., Li, G., Macek, B., Mortensen, P., Pesch, R., Makarov, A., Lange, O., Horning, S. & Mann, Matthias, 2005, In: Molecular and Cellular Proteomics. 4, 12, p. 2010-21 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Proteomic mapping of brain plasma membrane proteins

      Nielsen, P. A., Olsen, Jesper Velgaard, Podtelejnikov, A. V., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2005, In: Molecular and Cellular Proteomics. 4, 4, p. 402-8 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

      Gruhler, A., Olsen, Jesper Velgaard, Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, Matthias & Jensen, O. N., 2005, In: Molecular and Cellular Proteomics. 4, 3, p. 310-27 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. SUMO modification of the ubiquitin-conjugating enzyme E2-25K

      Pichler, A., Knipscheer, P., Oberhofer, E., van Dijk, W. J., Körner, R., Olsen, Jesper Velgaard, Jentsch, S., Melchior, F. & Sixma, T. K., 2005, In: Nature Structural and Molecular Biology. 12, 3, p. 264-9 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. 2006

    25. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

      Olsen, Jesper Velgaard, Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P. & Mann, Matthias, 2006, In: Cell. 127, 3, p. 635-48 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. In-gel digestion for mass spectrometric characterization of proteins and proteomes

      Shevchenko, A., Tomas, H., Havlis, J., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Nature Protocols (Print Edition). 1, 6, p. 2856-60 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer

      Mann, K., Macek, B. & Olsen, Jesper Velgaard, 2006, In: Proteomics. 6, 13, p. 3801-10 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

      de Godoy, L. M. F., Olsen, Jesper Velgaard, de Souza, G. A., Li, G., Mortensen, P. & Mann, Matthias, 2006, In: Genome Biology. 7, 6, p. R50

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

      Adachi, J., Kumar, C., Zhang, Y., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Genome Biology. 7, 9, p. R80

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

      Macek, B., Waanders, L. F., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Molecular and Cellular Proteomics. 5, 5, p. 949-58 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. 2007

    32. A mass spectrometry-friendly database for cSNP identification

      Schandorff, S., Olsen, Jesper Velgaard, Bunkenborg, J., Blagoev, B., Zhang, Y., Andersen, J. S. & Mann, Matthias, 2007, In: Nature Methods. 4, 6, p. 465-6 1 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification

      Notenboom, V., Hibbert, R. G., van Rossum-Fikkert, S. E., Olsen, Jesper Velgaard, Mann, Matthias & Sixma, T. K., 2007, In: Nucleic Acids Research. 35, 17, p. 5819-30 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Higher-energy C-trap dissociation for peptide modification analysis

      Olsen, Jesper Velgaard, Macek, B., Lange, O., Makarov, A., Horning, S. & Mann, Matthias, 2007, In: Nature Methods. 4, 9, p. 709-12 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation

      Knipscheer, P., van Dijk, W. J., Olsen, Jesper Velgaard, Mann, Matthias & Sixma, T. K., 2007, In: EMBO Journal. 26, 11, p. 2797-807 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

      Gnad, F., Ren, S., Cox, J., Olsen, Jesper Velgaard, Macek, B., Oroshi, M. & Mann, Matthias, 2007, In: Genome Biology. 8, 11, p. R250

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Phosphoproteins of the chicken eggshell calcified layer

      Mann, K., Olsen, Jesper Velgaard, Macek, B., Gnad, F. & Mann, Matthias, 2007, In: Proteomics. 7, 1, p. 106-15 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

      Macek, B., Gnad, F., Soufi, B., Kumar, C., Olsen, Jesper Velgaard, Mijakovic, I. & Mann, Matthias, 2007, In: Molecular and Cellular Proteomics. 7, 2, p. 299-307 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Quantitative proteomic assessment of very early cellular signaling events

      Dengjel, J., Akimov, V., Olsen, Jesper Velgaard, Bunkenborg, J., Mann, Matthias, Blagoev, B. & Andersen, J. S., 2007, In: Nature Biotechnology. 25, 5, p. 566-8 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels

      Olsen, Jesper Velgaard, Nielsen, P. A., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2007, In: Brain Research. 1134, 1, p. 95-106 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. The low molecular weight proteome of Halobacterium salinarum

      Klein, C., Aivaliotis, M., Olsen, Jesper Velgaard, Falb, M., Besir, H., Scheffer, B., Bisle, B., Tebbe, A., Konstantinidis, K., Siedler, F., Pfeiffer, F., Mann, Matthias & Oesterhelt, D., 2007, In: Journal of Proteome Research. 6, 4, p. 1510-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes

      Zhang, Y., Zhang, Y., Adachi, J., Olsen, Jesper Velgaard, Shi, R., de Souza, G., Pasini, E., Foster, L. J., Macek, B., Zougman, A., Kumar, C., Wisniewski, J. R., Jun, W. & Mann, Matthias, Jan 2007, In: Nucleic Acids Research. 35, Database issue, p. D771-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer

      Lu, A., Waanders, L. F., Almeida, R., Li, G., Allen, M., Cox, J., Olsen, Jesper Velgaard, Bonaldi, T. & Mann, Matthias, 1 Dec 2007, In: International Journal of Mass Spectrometry. 268, 2-3, p. 158-167 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. 2008

    45. Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics

      Mertins, P., Eberl, H. C., Renkawitz, J., Olsen, Jesper Velgaard, Tremblay, M. L., Mann, M., Ullrich, A. & Daub, H., 2008, In: Molecular and Cellular Proteomics. 7, 9, p. 1763-77 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle

      Daub, H., Olsen, Jesper Velgaard, Bairlein, M., Gnad, F., Oppermann, F. S., Körner, R., Greff, Z., Kéri, G., Stemmann, O. & Mann, M., 2008, In: Molecular Cell. 31, 3, p. 438-48 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry

      Bandeira, N., Olsen, Jesper Velgaard, Mann, M. & Pevzner, P. A., 2008, In: Bioinformatics. 24, 13, p. i416-23

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Profiling the phospho-status of the BKCa channel alpha subunit in rat brain reveals unexpected patterns and complexity

      Yan, J., Olsen, Jesper Velgaard, Park, K., Li, W., Bildl, W., Schulte, U., Aldrich, R. W., Fakler, B. & Trimmer, J. S., 2008, In: Molecular and Cellular Proteomics. 7, 11, p. 2188-98 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

      Pan, C., Gnad, F., Olsen, Jesper Velgaard & Mann, Matthias, 2008, In: Proteomics. 8, 21, p. 4534-46 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Ubc9 sumoylation regulates SUMO target discrimination

      Knipscheer, P., Flotho, A., Klug, H., Olsen, Jesper Velgaard, van Dijk, W. J., Fish, A., Johnson, E. S., Mann, M., Sixma, T. K. & Pichler, A., 2008, In: Molecular Cell. 31, 3, p. 371-82 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

      Macek, B., Mijakovic, I., Olsen, Jesper Velgaard, Gnad, F., Kumar, C., Jensen, P. R. & Mann, Matthias, Feb 2008, In: Molecular and Cellular Proteomics. 6, 4, p. 697-707 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis

      Mann, K., Olsen, Jesper Velgaard, MaĉEk, B., Gnad, F. & Mann, Matthias, Jun 2008, In: World's Poultry Science Journal. 64, 2, p. 209-218 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. 2009

    54. A dual pressure linear ion trap orbitrap instrument with very high sequencing speed

      Olsen, Jesper Velgaard, Schwartz, J. C., Griep-Raming, J., Nielsen, Michael Lund, Damoc, E., Denisov, E., Lange, O., Remes, P., Taylor, D., Splendore, M., Wouters, E. R., Senko, M., Makarov, A., Mann, Matthias & Horning, S., 2009, In: Molecular and Cellular Proteomics. 8, 12, p. 2759-69 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

      Cox, J., Matic, I., Hilger, M., Nagaraj, N., Selbach, M., Olsen, Jesper Velgaard & Mann, M., 2009, In: Nature Protocols (Print Edition). 4, 5, p. 698-705 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. Published

      Global analysis of the yeast osmotic stress response by quantitative proteomics

      Soufi, B., Kelstrup, C. D., Stoehr, G., Fröhlich, F., Walther, T. C. & Olsen, Jesper Velgaard, 2009, In: Molecular BioSystems. 5, 11, p. 1337-46 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

      Pan, C., Olsen, Jesper Velgaard, Daub, H. & Mann, Matthias, 2009, In: Molecular and Cellular Proteomics. 8, 12, p. 2796-808 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. High accuracy mass spectrometry in large-scale analysis of protein phosphorylation

      Olsen, Jesper Velgaard & Macek, B., 2009, In: Methods in Molecular Biology. 492, p. 131-42 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. Published

      High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast

      Gnad, F., de Godoy, L. M. F., Cox, J., Neuhauser, N., Ren, S., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In: Proteomics. 9, 20, p. 4642-4652 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Large-scale proteomics analysis of the human kinome

      Oppermann, F. S., Gnad, F., Olsen, Jesper Velgaard, Hornberger, R., Greff, Z., Kéri, G., Mann, M. & Daub, H., 2009, In: Molecular and Cellular Proteomics. 8, 7, p. 1751-64 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Published

      Lysine acetylation targets protein complexes and co-regulates major cellular functions

      Choudhary, Chunaram, Kumar, C., Gnad, F., Nielsen, Michael Lund, Rehman, M., Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In: Science. 325, 5942, p. 834-40 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. Published

      Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

      Choudhary, Chunaram, Olsen, Jesper Velgaard, Brandts, C., Cox, J., Reddy, P. N. G., Böhmer, F. D., Gerke, V., Schmidt-Arras, D., Berdel, W. E., Müller-Tidow, C., Mann, Matthias & Serve, H., 2009, In: Molecular Cell. 36, 2, p. 326-39 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. Phosphorylation of histone H3 Thr-45 is linked to apoptosis

      Hurd, P. J., Bannister, A. J., Halls, K., Dawson, M. A., Vermeulen, M., Olsen, Jesper Velgaard, Ismail, H., Somers, J., Mann, M., Owen-Hughes, T., Gout, I. & Kouzarides, T., 2009, In: Journal of Biological Chemistry. 284, 24, p. 16575-83 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Proteomics strategy for quantitative protein interaction profiling in cell extracts

      Sharma, K., Weber, C., Bairlein, M., Greff, Z., Kéri, G., Cox, J., Olsen, Jesper Velgaard & Daub, H., 2009, In: Nature Methods. 6, 10, p. 741-4 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. 2010
    66. Published

      Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

      Olsen, Jesper Velgaard, Vermeulen, M., Santamaria, A., Kumar, C., Miller, M. L., Jensen, Lars Juhl, Gnad, F., Cox, J., Jensen, T. S., Nigg, E. A., Brunak, Søren & Mann, Matthias, 2010, In: Science Signaling. 3, 104, p. ra3 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics

      Mortensen, P., Gouw, J. W., Olsen, Jesper Velgaard, Ong, S., Rigbolt, K. T. G., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J. R., Blagoev, B., Andersen, J. S. & Mann, Matthias, Jan 2010, In: Journal of Proteome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      Yeast expression proteomics by high-resolution mass spectrometry

      Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In: Methods in Enzymology. 470, p. 259-80 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    69. Published

      The phosphoproteome of toll-like receptor-activated macrophages

      Weintz, G., Olsen, Jesper Velgaard, Frühauf, K., Niedzielska, M., Amit, I., Jantsch, J., Mages, J., Frech, C., Dölken, L., Mann, M. & Lang, R., 8 Jun 2010, In: Molecular Systems Biology. 6, p. 371

      Research output: Contribution to journal › Journal article › Research › peer-review

    70. Published

      Quantitative phosphoproteomics dissection of 7TM receptor signaling using full and biased agonists

      Christensen, G. L., Kelstrup, C., Lyngsø, C., Sarwar, U., Bøgebo, R., Sheikh, S. P., Gammeltoft, S., Olsen, Jesper Velgaard & Hansen, J. L., Jul 2010, In: Molecular and Cellular Proteomics. 9, 7, p. 1540-53 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Published

      Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

      Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K. K., Olsen, Jesper Velgaard, Hyman, A. A., Stunnenberg, H. G. & Mann, M., 17 Sep 2010, In: Cell. 142, 6, p. 967-80 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. Published

      Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation

      Nagaraj, N., D'Souza, R. C. J., Cox, J., Olsen, Jesper Velgaard & Mann, M., 3 Dec 2010, In: Journal of Proteome Research. 9, 12, p. 6786-94 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. 2011
    74. Published

      Global phosphoproteome profiling reveals unanticipated networks responsive to cisplatin treatment of embryonic stem cells

      Pines, A., Kelstrup, C. D., Vrouwe, M. G., Puigvert, J. C., Typas, D., Misovic, B., de Groot, A., von Stechow, L., van de Water, B., Danen, E. H. J., Vrieling, H., Mullenders, L. H. F. & Olsen, Jesper Velgaard, 2011, In: Molecular and Cellular Biology. 31, 24, p. 4964-77 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Published

      Identification of animal species in skin clothing from museum collections

      Schmidt, A. L., Gilbert, M Thomas P, Cappellini, Enrico & Olsen, Jesper Velgaard, 2011. 8 p.

      Research output: Contribution to conference › Paper › Research › peer-review

    76. Published

      Phosphorylation of the yeast γ-tubulin Tub4 regulates microtubule function

      Lin, T., Gombos, L., Neuner, A., Sebastian, D., Olsen, Jesper Velgaard, Hrle, A., Benda, C. & Schiebel, E., 2011, In: P L o S One. 6, 5, p. e19700

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. Published

      Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington

      Waters, M. R., Stafford jr., T., McDonald, H. G., Gustafson, C., Rasmussen, M., Cappellini, Enrico, Olsen, Jesper Velgaard, Szklarczyk, D. M., Jensen, Lars Juhl, Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Science. 334, 6054, p. 351-353 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. Published

      Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation

      Weinert, B. T., Wagner, S. A., Horn, H., Henriksen, P., Liu, W. R., Olsen, Jesper Velgaard, Jensen, Lars Juhl & Choudhary, Chunaram, 2011, In: Science Signaling. 4, 183, p. ra48

      Research output: Contribution to journal › Journal article › Research › peer-review

    79. Published

      System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

      Rigbolt, K. T. G., Prokhorova, T., Akimov, V., Løkkegaard, Jeanette, Johansen, P. T., Kratchmarova, I., Kassem, M. S. E., Mann, Matthias, Olsen, Jesper Velgaard & Blagoev, B., 2011, In: Science Signaling. 4, 164, p. rs3

      Research output: Contribution to journal › Journal article › Research › peer-review

    80. Published

      Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community

      Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2011, In: Science Signaling. 4, 160, p. pe7

      Research output: Contribution to journal › Journal article › Research › peer-review

    81. Published

      GeLCMS for in-depth protein characterization and advanced analysis of proteomes

      Lundby, Alicia & Olsen, Jesper Velgaard, 1 Jan 2011, Gel-Free Proteomics Methods and Protocols. Vol. 753. p. 143-55 13 p.

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    82. Published

      Andromeda - a peptide search engine integrated into the MaxQuant environment

      Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A., Olsen, Jesper Velgaard & Mann, Matthias, 1 Apr 2011, In: Journal of Proteome Research. 10, 4, p. 1794-805 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    83. Published

      Separation of the gluconeogenic and mitochondrial functions of pgc-1α through s6 kinase

      Lustig, Y., Ruas, J. L., Estall, J. L., Lo, J. C., Devarakonda, S., Laznik, D., Choi, J. H., Spiegelman, B. M., Ono, H. & Olsen, Jesper Velgaard, 15 Jun 2011, In: Genes & Development. 25, 12, p. 1232-1244 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    84. Published

      Pinpointing Phosphorylation Sites: Quantitative Filtering and a Novel Site-specific x-Ion Fragment

      Kelstrup, C. D., Hekmat, O., Francavilla, C. & Olsen, Jesper Velgaard, 1 Jul 2011, In: Journal of Proteome Research. 10, 7, p. 2937-48 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    85. 2012
    86. Published

      Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation

      Nagaraj, N., D'Souza, R. C. J., Cox, J., Olsen, Jesper Velgaard & Mann, Matthias, 2012, In: Journal of Proteome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    87. Published

      Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer

      Kelstrup, C. D., Young, C., Lavallee, R., Nielsen, Michael Lund & Olsen, Jesper Velgaard, 2012, In: Journal of Proteome Research. p. 3487-3497 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    88. Published

      Proteomic analyses reveal divergent ubiquitylation site patterns in murinetissues

      Wagner, S. A., Beli, P., Weinert, B. T., Schölz, C. F., Kelstrup, C. D., Young, C., Nielsen, Michael Lund, Olsen, Jesper Velgaard, Brakebusch, Cord Herbert & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    89. Published

      Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins

      Cappellini, Enrico, Jensen, Lars Juhl, Szklarczyk, D. M., Ginolhac, A., Rodrigues da Fonseca, Rute Andreia, Stafford jr., T., Holen, S. R., Collins, M. J., Orlando, L. A. A., Willerslev, Eske, Gilbert, M Thomas P & Olsen, Jesper Velgaard, 2012, In: Journal of Proteome Research. 11, 2, p. 917-926 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    90. Published

      Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

      Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, Jesper Velgaard, Baskcomb, L., Mann, Matthias, Jackson, S. P. & Choudhary, Chunaram, 2012, In: Molecular Cell. 46, 2, p. 212-25 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. Published

      The Ndc80 internal loop is required for recruitment of the Ska complex to establish end-on microtubule attachment to kinetochores

      Zhang, G., Kelstrup, C. D., Hu, X., Hansen, M. J. K., Singleton, M. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2012, In: Journal of Cell Science. p. 3243-3253 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. Published

      Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues

      Lundby, Alicia, Secher, A., Lage, K., Nordsborg, Nikolai Baastrup, Dmytriyev, A., Lundby, C. & Olsen, Jesper Velgaard, 6 Jun 2012, In: Nature Communications. 3, p. 1-10 10 p., Article 876.

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Published

      α4βδ GABA receptors are high-affinity targets for γ-hydroxybutyric acid (GHB)

      Absalom, N., Karim, N., Eghorn, L. F., Villumsen, I. S., Bay, T., Bräuner, Hans, Frølund, Bente, Clausen, Rasmus Prætorius, Olsen, Jesper Velgaard, Knudsen, Gitte Moos, Chebib, M. & Wellendorph, Petrine, 14 Aug 2012, In: Proceedings of the National Academy of Sciences USA (PNAS). 109, 33, p. 13404-13409 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    94. Published

      Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns

      Lundby, Alicia, Hansen, K. L., Weinert, B. T., Breinholt Bekker-Jensen, D., Secher, A., Skovgaard, T., Kelstrup, C., Dmytriyev, A., Choudhary, Chunaram, Lundby, C. & Olsen, Jesper Velgaard, 30 Aug 2012, In: Cell Reports. 2, 2, p. 419-431 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    95. Published

      A Major Lineage of Enteroendocrine Cells Coexpress CCK, Secretin, GIP, GLP-1, PYY, and Neurotensin but Not Somatostatin

      Egerod, Kristoffer Lihme, Engelstoft, M. S., Grunddal, Kaare Villum, Nøhr, M. K., Secher, A., Sakata, I., Pedersen, Jens, Windeløv, Johanne Agerlin, Füchtbauer, E., Olsen, Jørgen, Sundler, F., Christensen, Jan Pravsgaard, Wierup, N., Olsen, Jesper Velgaard, Holst, Jens Juul, Zigman, J. M., Poulsen, Steen Seier & Schwartz, Thue W., 1 Dec 2012, In: Endocrinology. 153, 12, p. 5782-95 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. 2013
    97. Published

      Systems biology approach identifies the kinase Csnk1a1 as a regulator of the DNA damage response in embryonic stem cells

      Carreras Puigvert, J., von Stechow, L., Siddappa, R., Pines, A., Bahjat, M., Haazen, L. C. J. M., Olsen, Jesper Velgaard, Vrieling, H., Meerman, J. H. N., Mullenders, L. H. F., van de Water, B. & Danen, E. H. J., 2013, In: Science Signaling. 6, 259, p. ra5 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. Published

      The SH2 domain interaction landscape

      Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. Published

      Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

      Tyanova, S., Frishman, D., Cox, J., Mann, Matthias & Olsen, Jesper Velgaard, 10 Jan 2013, In: P L o S Computational Biology (Online). 9, 1, p. e1002842 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Published

      RNF4 is required for DNA double-strand break repair in vivo

      Vyas, R., Kumar, R., Clermont, F., Helfricht, A., Kalev, P., Sotiropoulou, P., Hendriks, I. A., Radaelli, E., Hochepied, T., Blanpain, C., Sablina, A., van Attikum, H., Olsen, Jesper Velgaard, Jochemsen, A. G., Vertegaal, A. C. O. & Marine, J., Mar 2013, In: Cell Death and Differentiation. 20, 3, p. 490-502 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    101. Published

      Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

      den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J. J. M., Peal, D. S., Evans, D. M., Nolte, I. M., Segrè, A. V., Holm, H., Handsaker, R. E., Westra, H-J., Johnson, T., Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P., Bochud, M. & 31 others, Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst, P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J. P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T., O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T., Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H. M., Olsen, Jesper Velgaard & Global BPgen Consortium, G. B. C., 14 Apr 2013, In: Nature Genetics. 45, 6, p. 621-631 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    102. Published

      In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of β-Adrenergic Receptor Signaling

      Lundby, Alicia, Andersen, M. N., Steffensen, Annette Buur, Horn, H., Kelstrup, C. D., Francavilla, C., Jensen, Lars Juhl, Schmitt, Nicole, Thomsen, Morten Bækgaard & Olsen, Jesper Velgaard, 4 Jun 2013, In: Science Signaling. 6, 278, p. rs11 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    103. Published

      Structures of down syndrome kinases, DYRKs, reveal mechanisms of kinase activation and substrate recognition

      Soundararajan, M., Roos, A. K., Savitsky, P., Filippakopoulos, P., Kettenbach, A. N., Olsen, Jesper Velgaard, Gerber, S., Eswaran, J., Knapp, S. & Elkins, J. M., 4 Jun 2013, In: Structure. 21, 6, p. 986-996 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    104. Published

      Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

      Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    105. Published

      TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells

      Hekmat, O., Munk, S., Fogh, L., Yadav, R., Francavilla, C., Horn, H., Würtz, S. Ø., Schrohl, A-S., Damsgaard, B., Romer, M. U., Belling, K., Jensen, N. F., Gromova, I., Bekker-Jensen, D. B., Moreira, J., Jensen, L. J., Gupta, R., Lademann, U. A., Brünner, N., Olsen, J. V. & 1 others, Stenvang, Jan, 5 Aug 2013, In: Journal of Proteome Research. 12, 9, p. 4136-4151 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    106. Published

      Phosphoproteomics taken to heart

      Lundby, Alicia & Olsen, Jesper Velgaard, 1 Sep 2013, In: Cell Cycle. 12, 17, p. 2707-2708 2 p.

      Research output: Contribution to journal › Editorial › Research › peer-review

    107. Published

      Genomic and proteomic analyses of Prdm5 reveal interactions with insulator binding proteins in embryonic stem cells

      Galli, G. G., Carrara, M., Francavilla, C., Honnens de Lichtenberg, K., Olsen, Jesper Velgaard, Calogero, R. A. & Lund, Anders H., 16 Sep 2013, In: Molecular and Cellular Biology.

      Research output: Contribution to journal › Journal article › Research › peer-review

    108. Published

      Functional Proteomics Defines the Molecular Switch Underlying FGF Receptor Trafficking and Cellular Outputs

      Francavilla, C., Rigbolt, K. T. G., Emdal, Kristina Bennet, Carraro, G., Vernet, E., Bekker-Jensen, D. B., Streicher, W., Wikström, M., Sundström, M., Bellusci, S., Cavallaro, U., Blagoev, B. & Olsen, Jesper Velgaard, 26 Sep 2013, In: Molecular Cell. 51, 6, p. 707-22 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    109. Published

      Status of large-scale analysis of post-translational modifications by mass spectrometry

      Olsen, Jesper Velgaard & Mann, Matthias, 1 Nov 2013, In: Molecular & Cellular Proteomics. 12, p. 3444-52

      Research output: Contribution to journal › Journal article › Research › peer-review

    110. Published

      The PI3-kinase isoform p110δ is essential for cell transformation induced by the D816V mutant of c-Kit in a lipid-kinase-independent manner

      Sun, J., Mohlin, S., Lundby, Alicia, Kazi, J. U., Hellman, U., Påhlman, S., Olsen, Jesper Velgaard & Rönnstrand, L., 11 Nov 2013, In: Oncogene.

      Research output: Contribution to journal › Journal article › Research › peer-review

    111. 2014
    112. Published

      Direct evidence of milk consumption from ancient human dental calculus

      Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, N., Craig, O. E., Swallow, D. M., Fotakis, A. K., Jersie-Christensen, R. R., Olsen, J. V., Liebert, A., Montalva, N., Fiddyment, S., Charlton, S., Mackie, M. E., Canci, A., Bouwman, A. & 3 others, Rühli, F., Gilbert, M Thomas P & Collins, M. J., 2014, In: Scientific Reports. 4, 6 p., 7104.

      Research output: Contribution to journal › Journal article › Research › peer-review

    113. Published

      Pathogens and host immunity in the ancient human oral cavity

      Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S. & 12 others, Teoh, K. Y., Kelstrup, C., Olsen, Jesper Velgaard, Nanni, P., Kawai, T., Willerslev, Eske, von Mering, C., Lewis, C. M., Collins, M. J., Gilbert, M Thomas P, Rühli, F. & Cappellini, Enrico, 2014, In: Nature Genetics. 46, p. 336-344 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    114. Published

      Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions

      Bøgebo, R., Horn, H., Olsen, Jesper Velgaard, Gammeltoft, S., Jensen, Lars Juhl, Hansen, J. L. & Christensen, G. L., 2014, In: PLOS ONE. 9, 4, p. 1-9 9 p., e94672.

      Research output: Contribution to journal › Journal article › Research › peer-review

    115. Published

      Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae)

      Cappellini, Enrico, Gentry, A., Palkopoulou, E., Ishida, Y., Cram, D., Roos, A., Watson, M., Johansson, U. S., Fernholm, B., Agnelli, P., Barbagli, F., Littlewood, D. T. J., Kelstrup, C., Olsen, Jesper Velgaard, Lister, A. M., Roca, A. L., Dalén, L. & Gilbert, M Thomas P, 2014, In: Zoological Journal of the Linnean Society. 170, 1, p. 222-232 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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