Lars Juhl Jensen

Lars Juhl Jensen

Professor, Group Leader, Professor

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    ORCID: 0000-0001-7885-715X

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    1. Crystal ball. Systems biology: in the broadest sense of the word

      Ussery, D., de Lichtenberg, U. & Jensen, Lars Juhl, 2005, In: Environmental Microbiology. 7, 4, p. 482-3 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Evolution and regulation of cellular periodic processes: a role for paralogues

      Trachana, K., Jensen, Lars Juhl & Bork, P., 1 Mar 2010, In: E M B O Reports. 11, 3, p. 233-8 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Spore number control and breeding in saccharomyces cerevisiae a key role for a self-organixzing system

      Taxis, C., Kavagiou, Z., Keller, P., Jensen, Lars Juhl, Colombelli, J., Bork, P., Stelzer, E. H. K. & Knop, M., 2005, In: Journal of Cell Biology. 171, p. 627-640

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Did the early full genome sequencing of yeast boost gene function discovery?

      Tantoso, E., Eisenhaber, B., Sinha, S., Jensen, Lars Juhl & Eisenhaber, F., 2023, In: Biology Direct. 18, 11 p., 46.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature

      Tantoso, E., Eisenhaber, B., Sinha, S., Jensen, Lars Juhl & Eisenhaber, F., 2023, In: Biology Direct. 18, 17 p., 7.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins

      Tagore, S., Gorohovski, A., Jensen, Lars Juhl & Frenkel-Morgenstern, M., 2019, In: PLOS Computational Biology. 15, 8, 16 p., e1007239.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      STRING v10: protein-protein interaction networks, integrated over the tree of life

      Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerta-Cepas, J., Simonovic, M., Roth, A., Santos Delgado, A., Tsafou, K. P., Kuhn, M., Bork, P., Jensen, Lars Juhl & von Mering, C., 28 Jan 2015, In: Nucleic Acids Research. 43, D1, p. D447-52 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

      Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, Lars Juhl & von Mering, C., 2011, In: Nucleic Acids Research. 39, Database issue, p. D561-8

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data

      Szklarczyk, D., Santos Delgado, A., von Mering, C., Jensen, Lars Juhl, Bork, P. & Kuhn, M., 2016, In: Nucleic Acids Research. 44, D1, p. D380-84 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

      Szklarczyk, D., Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, F., Hachilif, R., Gable, A. L., Fang, T., Doncheva, Nadezhda Tsankova, Pyysalo, S., Bork, P., Jensen, Lars Juhl & von Mering, C., 2023, In: Nucleic Acids Research. 51, D1, p. D638-D646 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

      Szklarczyk, D., Morris, J. H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos Delgado, A., Doncheva, Nadezhda Tsankova, Roth, A., Bork, P., Jensen, Lars Juhl & von Mering, C., Jan 2017, In: Nucleic Acids Research. 45, D1, p. D362-D368

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

      Szklarczyk, D., Gable, A. L., Nastou, Katerina, Lyon, D., Kirsch, Rebecca, Pyysalo, S., Doncheva, Nadezhda Tsankova, Legeay, M., Fang, T., Bork, P., Jensen, Lars Juhl & von Mering, C., 2021, In: Nucleic Acids Symposium Series. 49, D1, p. D605-D612 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

      Szklarczyk, D., Gable, A. L., Lyon, D., Junge, A., Wyder, S., Huerta-Cepas, J., Simonovic, M., Doncheva, Nadezhda Tsankova, Morris, J. H., Bork, P., Jensen, Lars Juhl & von Mering, C., 2019, In: Nucleic Acids Research. 47, D1, p. D607-D613 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Protein-Protein Interaction Databases

      Szklarczyk, D. & Jensen, Lars Juhl, 2015, Protein-Protein Interactions: Methods and Applications. Meyerkord, C. L. & Fu, H. (eds.). 2 ed. New York: Springer Publishing Company, Vol. 1278. p. 39-56 18 p. (Methods in Molecular Biology, Vol. 1278).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    15. Published

      Proteomic analysis of arginine methylation sites in human cells reveals dynamic regulation during transcriptional arrest

      Sylvestersen, K. B., Horn, H., Jungmichel, S., Jensen, Lars Juhl & Nielsen, Michael Lund, 21 Feb 2014, In: Molecular & Cellular Proteomics. 13, p. 2072-2088 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Homology-directed repair protects the replicating genome from metabolic assaults

      Somyajit, K., Spies, J., Coscia, F., Kirik, U., Rask, M., Lee, J., Neelsen, K. J., Mund, Andreas, Jensen, Lars Juhl, Paull, T. T., Mann, Matthias & Lukas, Jiri, 2021, In: Developmental Cell. 56, 4, p. 461-477.e7

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Martini: using literature keywords to compare gene sets

      Soldatos, T. G., O'Donoghue, S. I., Satagopam, V. P., Jensen, Lars Juhl, Brown, N. P., Barbosa-Silva, A. & Schneider, R., 2010, In: Nucleic Acids Research. 38, 1, p. 26-38 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. The atlas visualisation of genome-wide information

      Skovgaard, M., Jensen, Lars Juhl, Friis, C., Stærfeldt, H. H., Worning, P., Brunak, S. & Ussery, D. W., 2002, Methods in Microbiology. Vol. 33. p. 49-63

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    19. Published

      On the total number of genes and their length distribution in complete microbial genomes

      Skovgaard, M., Jensen, Lars Juhl, Brunak, Søren, Ussery, D. & Krogh, Anders, 2001, In: Trends in Genetics. 17, 8, p. 425-8 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000

      Sinha, S., Eisenhaber, B., Jensen, Lars Juhl, Kalbuaji, B. & Eisenhaber, F., 2018, In: Proteomics. 18, 21-22, p. 1-13 e1800093.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Seqenv: linking sequences to environments through text mining

      Sinclair, L., Ijaz, U. Z., Jensen, Lars Juhl, Coolen, M. J. L., Gubry-Rangin, C., Chroňáková, A., Oulas, A., Pavloudi, C., Schnetzer, J., Weimann, A., Ijaz, A., Eiler, A., Quince, C. & Pafilis, E., 20 Dec 2016, In: PeerJ. 4, p. 1-17 17 p., e2690.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      TCRD and Pharos 2021: mining the human proteome for disease biology

      Sheils, T. K., Mathias, S. L., Kelleher, K. J., Siramshetty, V. B., Nguyen, D. T., Bologa, C. G., Jensen, Lars Juhl, Vidović, D., Koleti, A., Schürer, S. C., Waller, A., Yang, J. J., Holmes, J., Bocci, G., Southall, N., Dharkar, P., Mathé, E., Simeonov, A. & Oprea, T. I., 2021, In: Nucleic Acids Research. 49, D1, p. D1334-D1346 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Extraction of transcript diversity from scientific literature

      Shah, P. K., Jensen, Lars Juhl, Boué, S. & Bork, P., 2005, In: P L o S Computational Biology. 1, 1, p. e10

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families

      Shah, P. K., Tripathi, L. P., Jensen, Lars Juhl, Gahnim, M., Mason, C., Furlong, E. E., Rodrigues, V., White, K. P., Bork, P. & Sowdhamini, R., 2008, In: Gene. 407, 1-2, p. 199-215 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

      Schölz, C., Lyon, D., Refsgaard, J. C., Jensen, Lars Juhl, Choudhary, Chunaram & Weinert, B. T., Nov 2015, In: Nature Methods. 12, p. 1003-4 2 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

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