Matthias Mann

Matthias Mann

Professor, head of research, Professor

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    ORCID: 0000-0003-1292-4799

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    1. Linkage-specific ubiquitin chain formation depends on a lysine hydrocarbon ruler

      Liwocha, J., Krist, D. T., van der Heden van Noort, G. J., Hansen, F. M., Truong, V. H., Karayel, O., Purser, N., Houston, D., Burton, N., Bostock, M. J., Sattler, M., Mann, Matthias, Harrison, J. S., Kleiger, G., Ovaa, H. & Schulman, B. A., Mar 2021, In: Nature Chemical Biology. 17, 3, p. 272-279 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Democratizing knowledge representation with BioCypher

      Lobentanzer, S., Aloy, P., Baumbach, J., Bohar, B., Carey, V. J., Charoentong, P., Danhauser, K., Doğan, T., Dreo, J., Dunham, I., Farr, E., Fernandez-Torras, A., Gyori, B. M., Hartung, M., Hoyt, C. T., Klein, C., Korcsmaros, T., Maier, A., Mann, M., Ochoa, D. & 12 others, Pareja-Lorente, E., Popp, F., Preusse, M., Probul, N., Schwikowski, B., Sen, B., Strauss, Maximilian, Turei, D., Ulusoy, E., Waltemath, D., Wodke, J. A. H. & Saez-Rodriguez, J., 2023, In: Nature Biotechnology. 41, p. 1056-1059

      Research output: Contribution to journal › Letter › Research › peer-review

    3. Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer

      Lu, A., Waanders, L. F., Almeida, R., Li, G., Allen, M., Cox, J., Olsen, Jesper Velgaard, Bonaldi, T. & Mann, Matthias, 1 Dec 2007, In: International Journal of Mass Spectrometry. 268, 2-3, p. 158-167 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Erratum: Evidence of extrapancreatic glucagon secretion in man. Diabetes 2016;65:585-597

      Lund, Asger Bach, Bagger, J. I., Albrechtsen, Nicolai Jacob Wewer, Christensen, M., Grøndahl, M., Hartmann, Bolette, Mathiesen, Elisabeth, Hansen, C. P., Storkholm, J. H., van Hall, Gerrit, Rehfeld, Jens Frederik, Hornburg, D., Meissner, F., Mann, Matthias, Larsen, S., Holst, Jens Juul, Vilsbøll, Tina & Knop, Filip Krag, 1 Jun 2016, In: Diabetes. 65, 6, p. 1752 1 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    5. Published

      Evidence of Extrapancreatic Glucagon Secretion in Man

      Lund, Asger Bach, Bagger, J. I., Albrechtsen, Nicolai Jacob Wewer, Christensen, M., Grøndahl, M., Hartmann, Bolette, Mathiesen, Elisabeth, Hansen, C. P., Storkholm, J. H., van Hall, Gerrit, Rehfeld, Jens Frederik, Hornburg, D., Meissner, F., Mann, Matthias, Larsen, S., Holst, Jens Juul, Vilsbøll, Tina & Knop, Filip Krag, Mar 2016, In: Diabetes. 65, 3, p. 585-597 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1

      Ma-Lauer, Y., Carbajo-Lozoya, J., Hein, M. Y., Müller, M. A., Deng, W., Lei, J., Meyer, B., Kusov, Y., von Brunn, B., Bairad, D. R., Hünten, S., Drosten, C., Hermeking, H., Leonhardt, H., Mann, Matthias, Hilgenfeld, R. & von Brunn, A., 30 Aug 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. E5192-201

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

      Macek, B., Waanders, L. F., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Molecular and Cellular Proteomics. 5, 5, p. 949-58 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Global and site-specific quantitative phosphoproteomics: principles and applications

      Macek, B., Mann, Matthias & Olsen, J. V., 2009, In: Annual Review of Pharmacology and Toxicology. 49, p. 199-221 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

      Macek, B., Mijakovic, I., Olsen, Jesper Velgaard, Gnad, F., Kumar, C., Jensen, P. R. & Mann, Matthias, Feb 2008, In: Molecular and Cellular Proteomics. 6, 4, p. 697-707 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

      Macek, B., Gnad, F., Soufi, B., Kumar, C., Olsen, Jesper Velgaard, Mijakovic, I. & Mann, Matthias, 2007, In: Molecular and Cellular Proteomics. 7, 2, p. 299-307 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis

      Mann, K., Olsen, Jesper Velgaard, MaĉEk, B., Gnad, F. & Mann, Matthias, Jun 2008, In: World's Poultry Science Journal. 64, 2, p. 209-218 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Phosphoproteins of the chicken eggshell calcified layer

      Mann, K., Olsen, Jesper Velgaard, Macek, B., Gnad, F. & Mann, Matthias, 2007, In: Proteomics. 7, 1, p. 106-15 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell

      Mann, K. & Mann, Matthias, 2013, In: Proteome Science. 11, 1, p. 40

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. In-depth proteomic analyses of (greenlip abalone) nacre and prismatic organic shell matrix

      Mann, K., Cerveau, N., Gummich, M., Fritz, M., Mann, Matthias & Jackson, D. J., 2018, In: Proteome Science. 16, p. 11

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Error-tolerant identification of peptides in sequence databases by peptide sequence tags

      Mann, Matthias & Wilm, M., 15 Dec 1994, In: Analytical Chemistry. 66, 24, p. 4390-9 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Proteomics for biomedicine: A half-completed journey

      Mann, Matthias, 1 Feb 2012, In: EMBO Molecular Medicine. 4, 2, p. 75-77 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The Coming Age of Complete, Accurate, and Ubiquitous Proteomes

      Mann, Matthias, Kulak, N. A., Nagaraj, N. & Cox, J., 21 Feb 2013, In: Molecular Cell. 49, 4, p. 583-590 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The ever expanding scope of electrospray mass spectrometry-a 30 year journey

      Mann, Matthias, 2019, In: Nature Communications. 10, 3744.

      Research output: Contribution to journal › Comment/debate › Research

    19. Artificial intelligence for proteomics and biomarker discovery

      Mann, Matthias, Kumar, C., Zeng, W. & Strauss, M. T., 18 Aug 2021, In: Cell Systems. 12, 8, p. 759-770 12 p.

      Research output: Contribution to journal › Review › Research › peer-review

    20. Published

      The Origins of Organellar Mapping by Protein Correlation Profiling

      Mann, Matthias, 2020, In: Proteomics. 20, 23, 4 p., e1900330.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Plenary Lecture Proteomics technologies for signaling, clinical applications

      Mann, Matthias, 2017, p. S62. 1 p.

      Research output: Contribution to conference › Conference abstract for conference › Research

    22. Published

      Development, use, application of novel TIMS-Tof system

      Mann, Matthias, 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S20 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    23. Origins of mass spectrometry-based proteomics

      Mann, Matthias, Nov 2016, In: Nature Reviews. Molecular Cell Biology. 17, 11, p. 678

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Ethical Principles, Constraints and Opportunities in Clinical Proteomics

      Porsdam Mann, Sebastian, Treit, P. V., Geyer, P. E., Omenn, G. S. & Mann, Matthias, 2021, In: Molecular and Cellular Proteomics. 20, 14 p., 100046.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Inflammatory signaling in human tuberculosis granulomas is spatially organized

      Marakalala, M. J., Raju, R. M., Sharma, K., Zhang, Y. J., Eugenin, E. A., Prideaux, B., Daudelin, I. B., Chen, P., Booty, M. G., Kim, J. H., Eum, S. Y., Via, L. E., Behar, S. M., Barry, C. E., Mann, Matthias, Dartois, V. & Rubin, E. J., May 2016, In: Nature Medicine. 22, 5, p. 531-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

      Marinkovic, M., Fuoco, C., Sacco, F., Cerquone Perpetuini, A., Giuliani, G., Micarelli, E., Pavlidou, T., Petrilli, L. L., Reggio, A., Riccio, F., Spada, F., Vumbaca, S., Zuccotti, A., Castagnoli, L., Mann, Matthias, Gargioli, C. & Cesareni, G., Jun 2019, In: Life Science Alliance. 2, 3

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

      Marx, H., Lemeer, S., Schliep, J. E., Matheron, L., Mohammed, S., Cox, J., Mann, Matthias, Heck, A. J. R. & Kuster, B., Jun 2013, In: Nature Biotechnology. 31, 6, p. 557-64 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers

      Mayr, C. H., Simon, L. M., Leuschner, G., Ansari, M., Schniering, J., Geyer, P. E., Angelidis, I., Strunz, M., Singh, P., Kneidinger, N., Reichenberger, F., Silbernagel, E., Böhm, S., Adler, H., Lindner, M., Maurer, B., Hilgendorff, A., Prasse, A., Behr, J., Mann, M. & 3 others, Eickelberg, O., Theis, F. J. & Schiller, H. B., 2021, In: EMBO Molecular Medicine. e12871.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells

      Mehta, S., Buyanbat, A., Kai, Y., Karayel, O., Goldman, S. R., Seruggia, D., Zhang, K., Fujiwara, Y., Donovan, K. A., Zhu, Q., Yang, H., Nabet, B., Gray, N. S., Mann, Matthias, Fischer, E. S., Adelman, K. & Orkin, S. H., 18 Aug 2022, In: Cell Chemical Biology. 29, 8, p. 1273-1287.e8

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

      Meier, F., Geyer, P. E., Virreira Winter, S., Cox, J. & Mann, Matthias, 2018, In: Nature Methods. 15, 6, p. 440-448 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

      Meier, F., Brunner, A., Frank, M., Ha, A., Bludau, I., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Bache, N., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2020, In: Nature Methods. 17, 12, p. 1229-1236

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Deep learning the collisional cross sections of the peptide universe from a million experimental values

      Meier, F., Köhler, N. D., Brunner, A. D., Wanka, J. M. H., Voytik, E., Strauss, M. T., Theis, F. J. & Mann, Matthias, 2021, In: Nature Communications. 12, 12 p., 1185.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation - Serial Fragmentation (PASEF) in Proteomics

      Meier, F., Park, M. A. & Mann, Matthias, 17 Aug 2021, (E-pub ahead of print) In: Molecular and Cellular Proteomics. p. 100138

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

      Meier, F., Brunner, A., Koch, S., Koch, H., Lubeck, M., Krause, M., Goedecke, N., Decker, J., Kosinski, T., Park, M. A., Bache, N., Hoerning, O., Cox, J., Räther, O. & Mann, Matthias, 2018, In: Molecular and Cellular Proteomics. 17, 12, p. 2534-2545

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Parallel accumulation - serial fragmentation combined with data-independent acquisition (diaPASEF)

      Meier, F., Brunner, A., Frank, M., Ha, A., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S17 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    36. Published

      The emerging role of mass spectrometry-based proteomics in drug discovery

      Meissner, F., Geddes-McAlister, J., Mann, Matthias & Bantscheff, M., 2022, In: Nature Reviews Drug Discovery. 21, p. 637-654 18 p.

      Research output: Contribution to journal › Review › Research › peer-review

    37. Direct proteomic quantification of the secretome of activated immune cells

      Meissner, F., Scheltema, R. A., Mollenkopf, H. & Mann, Matthias, 26 Apr 2013, In: Science (New York, N.Y.). 340, 6131, p. 475-8 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      The social and structural architecture of the yeast protein interactome

      Michaelis, A. C., Brunner, A., Zwiebel, M., Meier, F., Strauss, Maximilian, Bludau, I. & Mann, Matthias, 2023, In: Nature. 624, 7990, p. 192-200 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      HYPK promotes the activity of the Nα-acetyltransferase A complex to determine proteostasis of nonAc-X2/N-degron-containing proteins

      Miklánková, P., Linster, E., Boyer, J., Weidenhausen, J., Mueller, J., Armbruster, L., Lapouge, K., De La Torre, C., Bienvenut, W., Sticht, C., Mann, Matthias, Meinnel, T., Sinning, I., Giglione, C., Hell, R. & Wirtz, M., 2022, In: Science Advances. 8, 24, 14 p., eabn6153.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

      Mischnik, M., Sacco, F., Cox, J., Schneider, H., Schäfer, M., Hendlich, M., Crowther, D., Mann, Matthias & Klabunde, T., 1 Feb 2016, In: Bioinformatics (Online). 32, 3, p. 424-31 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

      Mootha, V. K., Bunkenborg, J., Olsen, Jesper Velgaard, Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., Patterson, N., Lander, E. S. & Mann, Matthias, 2003, In: Cell. 115, 5, p. 629-40 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics

      Mortensen, P., Gouw, J. W., Olsen, Jesper Velgaard, Ong, S., Rigbolt, K. T. G., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J. R., Blagoev, B., Andersen, J. S. & Mann, Matthias, Jan 2010, In: Journal of Proteome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      Spatial characterization of single tumor cells by proteomics

      Mund, Andreas & Mann, Matthias, 2022, In: Nature Biotechnology. 40, 8, p. 1186-1187 2 p.

      Research output: Contribution to journal › Comment/debate › Research

    44. Published

      Unbiased spatial proteomics with single-cell resolution in tissues

      Mund, Andreas, Brunner, A. & Mann, Matthias, 2022, In: Molecular Cell. 82, 12, p. 2335-2349 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    45. Published

      Deep Visual Proteomics defines single-cell identity and heterogeneity

      Mund, A., Coscia, F., Kriston, A., Hollandi, R., Kovács, F., Brunner, A-D., Migh, E., Schweizer, L., Santos, A., Bzorek, M., Naimy, S., Rahbek-Gjerdrum, L. M., Dyring-Andersen, B., Bulkescher, J., Lukas, C., Eckert, M. A., Lengyel, E., Gnann, C., Lundberg, E., Horvath, P. & 1 others, Mann, Matthias, 2022, In: Nature Biotechnology. 40, p. 1231-1240

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      Foresight in clinical proteomics: current status, ethical considerations, and future perspectives

      Mundt Madsen, Filip Oskar, Albrechtsen, Nicolai Jacob Wewer, Porsdam Mann, Sebastian, Treit, P., Ghodgaonkar-Steger, M., O’Flaherty, M., Raijmakers, R., Vizcaíno, J. A., Heck, A. J. R. & Mann, Matthias, 2023, In: Open Research Europe. 3, 19 p., 59.

      Research output: Contribution to journal › Letter › Research › peer-review

    47. Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging

      Murgia, M., Toniolo, L., Nagaraj, N., Ciciliot, S., Vindigni, V., Schiaffino, S., Reggiani, C. & Mann, Matthias, 13 Jun 2017, In: Cell Reports. 19, 11, p. 2396-2409 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      Protein profile of fiber types in human skeletal muscle: a single-fiber proteomics study

      Murgia, M., Nogara, L., Baraldo, M., Reggiani, C., Mann, Matthias & Schiaffino, S., 2021, In: Skeletal Muscle. 11, 1, 19 p., 24.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Plasma proteome profiling of healthy subjects undergoing bed rest reveals unloading-dependent changes linked to muscle atrophy

      Murgia, M., Brocca, L., Monti, E., Franchi, M. V., Zwiebel, M., Steigerwald, S., Giacomello, E., Sartori, R., Zampieri, S., Capovilla, G., Gasparini, M., Biolo, G., Sandri, M., Mann, Matthias & Narici, M. V., 2023, In: Journal of Cachexia, Sarcopenia and Muscle. 14, p. 439-451

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Single muscle fiber proteomics reveals unexpected mitochondrial specialization

      Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In: E M B O Reports. 16, 3, p. 387-95 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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