Matthias Mann

Matthias Mann

Professor, head of research, Professor

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    ORCID: 0000-0003-1292-4799

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    1. Transcription Factor MAFF (MAF Basic Leucine Zipper Transcription Factor F) Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism

      von Scheidt, M., Zhao, Y., de Aguiar Vallim, T. Q., Che, N., Wierer, M., Seldin, M. M., Franzén, O., Kurt, Z., Pang, S., Bongiovanni, D., Yamamoto, M., Edwards, P. A., Ruusalepp, A., Kovacic, J. C., Mann, Matthias, Björkegren, J. L. M., Lusis, A. J., Yang, X. & Schunkert, H., 2021, In: Circulation. 143, 18, p. 1809-1823

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

      de Godoy, L. M. F., Olsen, Jesper Velgaard, de Souza, G. A., Li, G., Mortensen, P. & Mann, Matthias, 2006, In: Genome Biology. 7, 6, p. R50

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements

      Zink, L., Delbarre, E., Eberl, H. C., Keilhauer, E. C., Bönisch, C., Pünzeler, S., Bartkuhn, M., Collas, P., Mann, Matthias & Hake, S. B., 2 Jun 2017, In: Nucleic Acids Research. 45, 10, p. 5691-5706 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes

      Zhang, Y., Zhang, Y., Adachi, J., Olsen, Jesper Velgaard, Shi, R., de Souza, G., Pasini, E., Foster, L. J., Macek, B., Zougman, A., Kumar, C., Wisniewski, J. R., Jun, W. & Mann, Matthias, Jan 2007, In: Nucleic Acids Research. 35, Database issue, p. D771-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex

      Zhang, G., Kruse, Thomas, Guasch Boldú, C., Garvanska, Dimitriya Hristoforova, Coscia, F., Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In: E M B O Journal. 38, 7, e100977.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Response to Raaijmakers & Medema

      Zhang, G., Kruse, Thomas, Boldú, C. G., Garvanska, Dimitriya Hristoforova, Coscia, F., Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In: The EMBO Journal. 38, 22, 5 p., e103547.

      Research output: Contribution to journal › Comment/debate › Research

    7. Published

      AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics

      Zeng, W. F., Zhou, X. X., Willems, S., Ammar, C., Wahle, M., Bludau, I., Voytik, E., Strauss, Maximilian & Mann, Matthias, 2022, In: Nature Communications. 13, 14 p., 7238.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Artificial intelligence in mass spectrometry-based proteomics

      Zeng, W. F., Mann, Matthias & Strauss, Maximilian, 2024, Artificial Intelligence in Clinical Practice: How AI Technologies Impact Medical Research and Clinics. Elsevier, p. 389-394 6 p.

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    9. Adverse stem cell clones within a single patient's tumor predict clinical outcome in AML patients

      Zeller, C., Richter, D., Jurinovic, V., Valtierra-Gutiérrez, I. A., Jayavelu, A. K., Mann, Matthias, Bagnoli, J. W., Hellmann, I., Herold, T., Enard, W., Vick, B. & Jeremias, I., 12 Mar 2022, In: Journal of Hematology & Oncology. 15, 1, p. 25

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers

      Zanivan, S., Maione, F., Hein, M. Y., Hernández-Fernaud, J. R., Ostasiewicz, P., Giraudo, E. & Mann, Matthias, 26 Aug 2013, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis

      Zanivan, S., Meves, A., Behrendt, K., Schoof, E., Neilson, L. J., Cox, J., Tang, H. R., Kalna, G., van Ree, J. H., van Deursen, J. M., Trempus, C. S., Machesky, L. M., Linding, R., Wickström, S. A., Fässler, R. & Mann, Matthias, 21 Feb 2013, In: Cell Reports. 3, 2, p. 552-566 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells

      Yin, H., Karayel, O., Chao, Y., Seeholzer, T., Hamp, I., Plettenburg, O., Gehring, T., Zielinski, C., Mann, Matthias & Krappmann, D., 31 Jan 2022, In: Cellular and Molecular Life Sciences. 79, 2, p. 112

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

      Yang, P., Humphrey, S. J., Cinghu, S., Pathania, R., Oldfield, A. J., Kumar, D., Perera, D., Yang, J. Y. H., James, D. E., Mann, Matthias & Jothi, R., 22 May 2019, In: Cell Systems. 8, 5, p. 427-445.e10

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Consistency across multi-omics layers in a drug-perturbed gut microbial community

      Wuyts, S., Alves, R., Zimmermann-Kogadeeva, M., Nishijima, S., Blasche, S., Driessen, M., Geyer, P. E., Hercog, R., Kartal, E., Maier, L., Müller, J. B., Garcia Santamarina, S., Schmidt, T. S. B., Sevin, D. C., Telzerow, A., Treit, P. V., Wenzel, T., Typas, A., Patil, K. R., Mann, M. & 2 others, Kuhn, M. & Bork, P., 2023, In: Molecular Systems Biology. 19, 9, 17 p., e11525.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Dynamics in protein translation sustaining T cell preparedness

      Wolf, T., Jin, W., Zoppi, G., Vogel, I. A., Akhmedov, M., Bleck, C. K. E., Beltraminelli, T., Rieckmann, J. C., Ramirez, N. J., Benevento, M., Notarbartolo, S., Bumann, D., Meissner, F., Grimbacher, B., Mann, Matthias, Lanzavecchia, A., Sallusto, F., Kwee, I. & Geiger, R., 6 Jul 2020, (E-pub ahead of print) In: Nature Immunology.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA

      Woerner, A. C., Frottin, F., Hornburg, D., Feng, L. R., Meissner, F., Patra, M., Tatzelt, J., Mann, Matthias, Winklhofer, K. F., Hartl, F. U. & Hipp, M. S., 8 Jan 2016, In: Science (New York, N.Y.). 351, 6269, p. 173-6 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting

      Wiśniewski, J. R. & Mann, Matthias, 1 Jul 2016, In: Journal of Proteome Research. 15, 7, p. 2321-6 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma

      Wiśniewski, J. R., Ostasiewicz, P., Duś, K., Zielińska, D. F., Gnad, F. & Mann, Matthias, 1 Jan 2012, In: Molecular Systems Biology. 8, 611.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. In vivo PDX CRISPR/Cas9 screens reveal mutual therapeutic targets to overcome heterogeneous acquired chemo-resistance

      Wirth, A-K., Wange, L., Vosberg, S., Henrich, K-O., Rausch, C., Özdemir, E., Zeller, C. M., Richter, D., Feuchtinger, T., Kaller, M., Hermeking, H., Greif, P. A., Senft, D., Jurinovic, V., Bahrami, E., Jayavelu, A. K., Westermann, F., Mann, M., Enard, W., Herold, T. & 1 others, Jeremias, I., 2022, In: Leukemia. 36, p. 2863-2874 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

      Windeløv, Johanne Agerlin, Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Jepsen, Sara Lind, Hornburg, D., Pedersen, Jens, Jensen, E. P., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Ørgaard, A., Deacon, Carolyn F., Mann, Matthias, Kissow, Hannelouise, Hartmann, Bolette & Holst, Jens Juul, Oct 2017, In: Diabetologia. 60, 10, p. 2066-2075 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry

      Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotsis, T. & Mann, Matthias, 1 Feb 1996, In: Nature. 379, 6564, p. 466-9 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. AlphaTims: Indexing Trapped Ion Mobility Spectrometry-TOF Data for Fast and Easy Accession and Visualization

      Willems, S., Voytik, E., Skowronek, P., Strauss, Maximilian & Mann, Matthias, 2021, In: Molecular and Cellular Proteomics. 20, p. 100149

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories towards type 2 diabetes

      Wigger, L., Barovic, M., Brunner, A-D., Marzetta, F., Schöniger, E., Mehl, F., Kipke, N., Friedland, D., Burdet, F., Kessler, C., Lesche, M., Thorens, B., Bonifacio, E., Legido-Quigley, C., Barbier Saint Hilaire, P., Delerive, P., Dahl, A., Klose, C., Gerl, M. J., Simons, K. & 7 others, Aust, D., Weitz, J., Distler, M., Schulte, A. M., Mann, Matthias, Ibberson, M. & Solimena, M., 28 Jun 2021, (E-pub ahead of print) In: Nature Metabolism.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

      Wierer, M. & Mann, Matthias, 1 Oct 2016, In: Human Molecular Genetics. 25, R2, p. R106-R114

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression

      Wierer, M., Prestel, M., Schiller, H., Yan, G., Schaab, C., Azghandi, S., Werner, J., Kessler, T., Malik, R., Murgia, M., Aherrahrou, Z., Schunkert, H., Dichgans, M. & Mann, Matthias, Feb 2018, In: Molecular and Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

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