Lars Juhl Jensen
Professor, Group Leader, Professor
Jensen Group
Blegdamsvej 3, 2200 København N., 06 Bygning 6, Building: 06-2-26
Member of:
- Published
Differential Expression of the β3 Subunit of Voltage-Gated Ca2+ Channel in Mesial Temporal Lobe Epilepsy
Kjær, C., Palasca, Oana, Barzaghi, G., Bak, Lasse Kristoffer, Durhuus, R. K. J., Jakobsen, Emil, Pedersen, Louise, Bartels, Emil Daniel, Woldbye, David Paul Drucker, Pinborg, Lars Hageman & Jensen, Lars Juhl, 2023, In: Molecular Neurobiology. 60, p. 5755–5769Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differentially Expressed miRNAs in Ulcerative Colitis and Crohn's Disease
Yarani, R., Shojaeian, A., Palasca, Oana, Doncheva, Nadezhda Tsankova, Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2022, In: Frontiers in Immunology. 13, 21 p., 865777.Research output: Contribution to journal › Review › Research › peer-review
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Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA
Eriksson, R., Aagaard, L., Jensen, Lars Juhl, Borisova, L., Hørlück, D., Brunak, Søren & Hansen, E. H., 2014, In: Pharmacology Research & Perspectives. 2, 3, p. 1-10 e00038.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration
Grissa, Dhouha, Junge, A., Oprea, T. I. & Jensen, Lars Juhl, 2022, In: Database : the journal of biological databases and curation. 2022, 2022, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DistiLD Database: diseases and traits in linkage disequilibrium blocks
Palleja, A., Horn, H., Eliasson, S. & Jensen, Lars Juhl, 2012, In: Nucleic Acids Research. 40, Database issue, p. D1036-40Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DoReMi: context-based prioritization of linear motif matches
Horn, H., Haslam, N. & Jensen, Lars Juhl, 20 Mar 2014, In: PeerJ. 2, 10 p., e315.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dose-specific adverse drug reaction identification in electronic patient records: temporal data mining in an inpatient psychiatric population
Eriksson, R., Werge, T., Jensen, Lars Juhl & Brunak, Søren, Apr 2014, In: Drug Safety. 37, 4, p. 237-47 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drug target identification using side-effect similarity
Campillos, M., Kuhn, M., Gavin, A., Jensen, Lars Juhl & Bork, P., 2008, In: Science. 321, 5886, p. 263-6 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drug target ontology to classify and integrate drug discovery data
Lin, Y., Mehta, S., Küçük-McGinty, H., Turner, J. P., Vidovic, D., Forlin, M., Koleti, A., Nguyen, D-T., Jensen, L. J., Guha, R., Mathias, S. L., Ursu, O., Stathias, V., Duan, J., Nabizadeh, N., Chung, C., Mader, C., Visser, U., Yang, J. J., Bologa, C. G. & 2 others, , 9 Nov 2017, In: Journal of Biomedical Semantics. 8, 1, 16 p., 50.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drug-induced regulation of target expression
Iskar, M., Campillos, M., Kuhn, M., Jensen, Lars Juhl, van Noort, V. & Bork, P., 1 Jan 2010, In: PLoS Computational Biology. 6, 9Research output: Contribution to journal › Journal article › Research › peer-review
Dynamic complex formation during the yeast cell cycle
de Lichtenberg, U., Jensen, Lars Juhl, Brunak, S. & Bork, P., 2005, In: Science (New York, N.Y.). 307, 5710, p. 724-7 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
Pafilis, E., Pletscher-Frankild, S., Schnetzer, J., Fanini, L., Faulwetter, S., Pavloudi, C., Vasileiadou, K., Leary, P., Hammock, J., Schulz, K., Parr, C. S., Arvanitidis, C. & Jensen, Lars Juhl, 2015, In: Bioinformatics. 31, 11, p. 1872-1874Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation
Pafilis, E., Buttigieg, P. L., Ferrell, B., Pereira, E., Schnetzer, J., Arvanitidis, C. & Jensen, Lars Juhl, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 7 p., baw005.Research output: Contribution to journal › Journal article › Research › peer-review
Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families
Shah, P. K., Tripathi, L. P., Jensen, Lars Juhl, Gahnim, M., Mason, C., Furlong, E. E., Rodrigues, V., White, K. P., Bork, P. & Sowdhamini, R., 2008, In: Gene. 407, 1-2, p. 199-215 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population
Eriksson, R., Werge, T., Jensen, Lars Juhl & Brunak, Søren, May 2014, In: Drug Safety. 37, 5, p. 379Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution and regulation of cellular periodic processes: a role for paralogues
Trachana, K., Jensen, Lars Juhl & Bork, P., 1 Mar 2010, In: E M B O Reports. 11, 3, p. 233-8 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution of cell cycle control: same molecular machines, different regulation
de Lichtenberg, U., Jensen, T. S., Brunak, S., Bork, P. & Jensen, Lars Juhl, 2007, In: Cell Cycle. 6, 15, p. 1819-25 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Extraction of regulatory gene/protein networks from Medline
Saric, J., Jensen, Lars Juhl, Ouzounova, R., Rojas, I. & Bork, P., 2006, In: Bioinformatics. 22, 6, p. 645-50 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Extraction of transcript diversity from scientific literature
Shah, P. K., Jensen, Lars Juhl, Boué, S. & Bork, P., 2005, In: P L o S Computational Biology. 1, 1, p. e10Research output: Contribution to journal › Journal article › Research › peer-review
- Published
FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data
Koutrouli, Mikaela, Nastou, Katerina, Piera Líndez, Pau, Bouwmeester, R., Rasmussen, Simon, Martens, L. & Jensen, Lars Juhl, 2024, In: Bioinformatics. 40, 2, 11 p., btae010.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Huerta-Cepas, J., Forslund, K., Coelho, L. P., Szklarczyk, D., Jensen, Lars Juhl, von Mering, C. & Bork, P., 1 Aug 2017, In: Molecular Biology and Evolution. 34, 8, p. 2115-2122 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Feature-based prediction of non-classical and leaderless protein secretion
Bendtsen, J. D., Jensen, Lars Juhl, Blom, N., Von Heijne, G. & Brunak, S., 2004, In: Protein Engineering Design and Selection (Print). 17, 4, p. 349-56 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From Phosphosites to Kinases
Munk, S., Refsgaard, J. C., Olsen, Jesper Velgaard & Jensen, Lars Juhl, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 307-21 15 p. (Methods in molecular biology (Clifton, N.J.)).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Functionality of system components: conservation of protein function in protein feature space
Jensen, Lars Juhl, Ussery, D. & Brunak, S., 2003, In: Genome Research. 13, 11, p. 2444-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels
Frenkel-Morgenstern, M., Danon, T., Christian, T., Igarashi, T., Cohen, L., Hou, Y. & Jensen, Lars Juhl, 2012, In: Molecular Systems Biology. 8, p. 572Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates
Pan, X., Wenzel, Anne, Jensen, Lars Juhl & Gorodkin, Jan, 2018, In: PLoS ONE. 13, 8, 15 p., e0202369.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases
Palleja, A. & Jensen, Lars Juhl, 2015, In: PeerJ. 3, p. 1-10 10 p., e1057.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-resolution transcription atlas of the mitotic cell cycle in budding yeast
Granovskaia, M. V., Jensen, Lars Juhl, Ritchie, M. E., Toedling, J., Ning, Y., Bork, P., Huber, W. & Steinmetz, L. M., 1 Jan 2010, In: Genome Biology (Online Edition). 11, 3, p. R24Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Homologous and non-homologous sequence methods for assigning protein function
Yeats, C., orengo, C., Veuthey, A. L., Boeckmann, B., Jensen, Lars Juhl, Valencia, A., Rausell, A. & Bork, P., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 213-238Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Homology-directed repair protects the replicating genome from metabolic assaults
Somyajit, K., Spies, J., Coscia, F., Kirik, U., Rask, M., Lee, J., Neelsen, K. J., Mund, Andreas, Jensen, Lars Juhl, Paull, T. T., Mann, Matthias & Lukas, Jiri, 2021, In: Developmental Cell. 56, 4, p. 461-477.e7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human pathways in animal models: possibilities and limitations
Doncheva, Nadezhda Tsankova, Palasca, Oana, Yarani, R., Litman, Thomas, Anthon, Christian, Groenen, M. A. M., Stadler, P. F., Pociot, Flemming, Jensen, Lars Juhl & Gorodkin, Jan, 2021, In: Nucleic Acids Research. 49, 4, p. 1859-1871 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Hunting for the elusive target antigen in gestational alloimmune liver disease (GALD)
Rieneck, K., Rasmussen, K. K., Schoof, E. M., Clausen, F. B., Holze, H., Bergholt, Thomas, Jørgensen, M. H., Christensen, Vibeke Brix, Almaas, R., Jordal, P. L., Locard-Paulet, Marie, Runager, K., Nielsen, L. K., Schlotmann, Balthasar Clemens, Weischenfeldt, Joachim Lütken, Jensen, Lars Juhl & Dziegiel, Morten Hanefeld, 2023, In: PLoS ONE. 18, 10, 25 p., e0286432.Research output: Contribution to journal › Journal article › Research › peer-review
Identification and analysis of evolutionarily cohesive functional modules in protein networks
Campillos, M., von Mering, C., Jensen, Lars Juhl & Bork, P., 2006, In: Genome Research. 16, 3, p. 374-82 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types
Hjaltelin, Jessica Xin, Izarzugaza, J. M. G., Jensen, Lars Juhl, Russo, F., Westergaard, David & Brunak, Søren, 2019, In: npj Systems Biology and Applications. 5, 10 p., 27.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of novel type 1 diabetes candidate genes by integrating genome-wide association data, protein-protein interactions, and human pancreatic islet gene expression
Bergholdt, R., Brorsson, C., Palleja, A., Berchtold, L. A., Fløyel, T., Bang-Berthelsen, C. H., Frederiksen, K. S., Jensen, Lars Juhl, Størling, J. & Pociot, F., 2012, In: Diabetes. 61, 4, p. 954-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines
Warrer, P., Jensen, P. B., Aagaard, L., Jensen, Lars Juhl, Brunak, S., Krag, M. H., Rossing, P., Almdal, T., Andersen, H. U. & Hansen, E. H., 20 May 2015, In: Journal of Research in Pharmacy Practice. 4, 2, p. 64-72 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
Hooper, S. D., Boué, S., Krause, R., Jensen, Lars Juhl, Mason, C. E., Ghanim, M., White, K. P., Furlong, E. E. M. & Bork, P., 2007, In: Molecular Systems Biology. 3, p. 72Research output: Contribution to journal › Journal article › Research › peer-review
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Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies
Locard-Paulet, Marie, Palasca, Oana & Jensen, Lars Juhl, 2022, In: PLOS Computational Biology. 18, 10, 20 p., e1010604.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Impact of acute alcohol consumption on circulating microbiome in asymptomatic alcohol-related liver disease
Israelsen, M., Alvarez Silva, Maria Camila, Madsen, B. S., Hansen, C. D., Torp, N. C., Johansen, S., Hansen, J. K., Prier Lindvig, K., Insonere, J., Riviere, V., Juel, H. B., Brejnrod, A., Jensen, Lars Juhl, Thiele, M., Lelouvier, B., Hansen, Torben, Arumugam, Mani & Krag, A., 2023, (E-pub ahead of print) In: Gut. gutjnl-2023-330360.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Impact of microRNA-130a on the neutrophil proteome
Pedersen, C. C., Refsgaard, J. C., Østergaard, Ole, Jensen, Lars Juhl, Heegaard, N. H. H., Borregaard, N. & Cowland, J. B., 25 Nov 2015, In: B M C Immunology. 16, 10 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improved metagenome binning and assembly using deep variational autoencoders
Nissen, J. N., Johansen, Joachim, Allesoe, R. L., Sonderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2021, In: Nature Biotechnology. 39, p. 555-560Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models
Kirik, U., Refsgaard, J. C. & Jensen, Lars Juhl, 2019, In: Journal of Proteome Research. 18, 6, p. 2385-2396Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of β-Adrenergic Receptor Signaling
Lundby, Alicia, Andersen, M. N., Steffensen, Annette Buur, Horn, H., Kelstrup, C. D., Francavilla, C., Jensen, Lars Juhl, Schmitt, Nicole, Thomsen, Morten Bækgaard & Olsen, Jesper Velgaard, 4 Jun 2013, In: Science Signaling. 6, 278, p. rs11 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Inferring disease-associated long non-coding RNAs using genome - wide tissue expression profiles
Pan, X., Jensen, Lars Juhl & Gorodkin, Jan, 2019, In: Bioinformatics. 35, 9, p. 1494-1502 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
KinomeXplorer: an integrated platform for kinome biology studies
Horn, H., Schoof, E. M., Kim, J., Robin, X., Miller, M. L., Diella, F., Palma, A., Cesareni, G., Jensen, Lars Juhl & Linding, R., 29 May 2014, In: Nature Methods. 11, 6, p. 603-4 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
Large-scale extraction of gene regulation for model organisms in an ontological context
Saric, J., Jensen, Lars Juhl & Rojas, I., 2005, In: In Silico Biology. 5, 1, p. 21-32 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Large-scale prediction of drug-target relationships
Kuhn, M., Campillos, M., González, P., Jensen, Lars Juhl & Bork, P., 2008, In: F E B S Letters. 582, 8, p. 1283-90 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix
Versace, E., Sgadò, P., George, J., Loveland, J. L., Ward, J., Thorpe, P., Jensen, Lars Juhl, Spencer, K. A., Paracchini, S. & Vallortigara, G., 2022, In: Scientific Reports. 12, 1, 12 p., 12086.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linear motif atlas for phosphorylation-dependent signaling
Miller, M. L., Jensen, L. J., Diella, F., Jørgensen, C., Tinti, M., Li, L., Hsiung, M., Parker, S. A., Bordeaux, J., Sicheritz-Ponten, T., Olhovsky, M., Pasculescu, A., Alexander, J., Knapp, S., Blom, N., Bork, P., Li, S., Cesareni, G., Pawson, T., Turk, B. E. & 3 others, , 2008, In: Science Signaling. 1, 35, p. ra2Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining
Kirk, I. K., Simon, C., Banasik, K., Holm, P. C., Haue, A. D., Jensen, P. B., Jensen, L. J., Rodriguez, C. L., Pedersen, M. K., Eriksson, R., Andersen, H. U., Almdal, T., Bork-Jensen, J., Grarup, N., Borch-Johnsen, K., Pedersen, O., Pociot, F., Hansen, T., Bergholdt, R., Rossing, P. & 1 others, , 2019, In: eLife. 8, 19 p., e44941.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 9931112
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TISSUES 2.0: an integrative web resource on mammalian tissue expression
Research output: Contribution to journal › Journal article › Research › peer-review
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STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
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477
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Drug target ontology to classify and integrate drug discovery data
Research output: Contribution to journal › Journal article › Research › peer-review
Published