Jesper Velgaard Olsen

Jesper Velgaard Olsen

Professor, Deputy Head of Centre, Professor

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    ORCID: 0000-0002-4747-4938

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    1. Published

      Recent findings and technological advances in phosphoproteomics for cells and tissues

      von Stechow, L., Francavilla, C. & Olsen, Jesper Velgaard, 2015, In: Expert Review of Proteomics. 12, 5, p. 469-87 19 p.

      Research output: Contribution to journal › Review › Research › peer-review

    2. Published

      Proteomics insights into DNA damage response and translating this knowledge to clinical strategies

      von Stechow, L. & Olsen, Jesper Velgaard, Feb 2017, In: Proteomics. 17, 3-4, 15 p., 1600018.

      Research output: Contribution to journal › Review › Research › peer-review

    3. Published

      52 Genetic Loci Influencing Myocardial Mass

      van der Harst, P., van Setten, J., Verweij, N., Vogler, G., Franke, L., Maurano, M. T., Wang, X., Mateo Leach, I., Eijgelsheim, M., Sotoodehnia, N., Hayward, C., Sorice, R., Meirelles, O., Lyytikäinen, L-P., Polašek, O., Tanaka, T., Arking, D. E., Ulivi, S., Trompet, S., Müller-Nurasyid, M. & 140 others, Smith, A. V., Dörr, M., Kerr, K. F., Magnani, J. W., Del Greco M, F., Zhang, W., Nolte, I. M., Silva, C. T., Padmanabhan, S., Tragante, V., Esko, T., Abecasis, G. R., Adriaens, M. E., Andersen, K., Barnett, P., Bis, J. C., Bodmer, R., Buckley, B. M., Campbell, H., Cannon, M. V., Chakravarti, A., Chen, L. Y., Delitala, A., Devereux, R. B., Doevendans, P. A., Dominiczak, A. F., Ferrucci, L., Ford, I., Gieger, C., Harris, T. B., Haugen, E., Heinig, M., Hernandez, D. G., Hillege, H. L., Hirschhorn, J. N., Hofman, A., Hubner, N., Hwang, S., Iorio, A., Kähönen, M., Kellis, M., Kolcic, I., Kooner, I. K., Kooner, J. S., Kors, J. A., Lakatta, E. G., Lage, K., Launer, L. J., Levy, D., Lundby, Alicia, Macfarlane, P. W., May, D., Meitinger, T., Metspalu, A., Nappo, S., Naitza, S., Neph, S., Nord, A. S., Nutile, T., Okin, P. M., Olsen, Jesper Velgaard, Oostra, B. A., Penninger, J. M., Pennacchio, L. A., Pers, Tune H, Perz, S., Peters, A., Pinto, Y. M., Pfeufer, A., Pilia, M. G., Pramstaller, P. P., Prins, B. P., Raitakari, O. T., Raychaudhuri, S., Rice, K. M., Rossin, E. J., Rotter, J. I., Schafer, S., Schlessinger, D., Schmidt, C. O., Sehmi, J., Silljé, H. H. W., Sinagra, G., Sinner, M. F., Slowikowski, K., Soliman, E. Z., Spector, T. D., Spiering, W., Stamatoyannopoulos, J. A., Stolk, R. P., Strauch, K., Tan, S., Tarasov, K. V., Trinh, B., Uitterlinden, A. G., van den Boogaard, M., van Duijn, C. M., van Gilst, W. H., Viikari, J. S., Visscher, P. M., Vitart, V., Völker, U., Waldenberger, M., Weichenberger, C. X., Westra, H., Wijmenga, C., Wolffenbuttel, B. H., Yang, J., Bezzina, C. R., Munroe, P. B., Snieder, H., Wright, A. F., Rudan, I., Boyer, L. A., Asselbergs, F. W., van Veldhuisen, D. J., Stricker, B. H., Psaty, B. M., Ciullo, M., Sanna, S., Lehtimäki, T., Wilson, J. F., Bandinelli, S., Alonso, A., Gasparini, P., Jukema, J. W., Kääb, S., Gudnason, V., Felix, S. B., Heckbert, S. R., de Boer, R. A., Newton-Cheh, C., Hicks, A. A., Chambers, J. C., Jamshidi, Y., Visel, A., Christoffels, V. M., Isaacs, A., Samani, N. J. & de Bakker, P. I. W., 27 Sep 2016, In: Journal of the American College of Cardiology. 68, 13, p. 1435-48 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

      den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J. J. M., Peal, D. S., Evans, D. M., Nolte, I. M., Segrè, A. V., Holm, H., Handsaker, R. E., Westra, H-J., Johnson, T., Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P., Bochud, M. & 31 others, Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst, P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J. P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T., O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T., Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H. M., Olsen, Jesper Velgaard & Global BPgen Consortium, G. B. C., 14 Apr 2013, In: Nature Genetics. 45, 6, p. 621-631 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

      de Godoy, L. M. F., Olsen, Jesper Velgaard, de Souza, G. A., Li, G., Mortensen, P. & Mann, Matthias, 2006, In: Genome Biology. 7, 6, p. R50

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes

      Zhang, Y., Zhang, Y., Adachi, J., Olsen, Jesper Velgaard, Shi, R., de Souza, G., Pasini, E., Foster, L. J., Macek, B., Zougman, A., Kumar, C., Wisniewski, J. R., Jun, W. & Mann, Matthias, Jan 2007, In: Nucleic Acids Research. 35, Database issue, p. D771-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      The Ndc80 internal loop is required for recruitment of the Ska complex to establish end-on microtubule attachment to kinetochores

      Zhang, G., Kelstrup, C. D., Hu, X., Hansen, M. J. K., Singleton, M. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2012, In: Journal of Cell Science. p. 3243-3253 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Characterization of TGF-β signaling in a human organotypic skin model reveals that loss of TGF-βRII induces invasive tissue growth

      Ye, Z., Kilic, G., Dabelsteen, Sally, Marinova, I. N., Thøfner, J. F. B., Song, Ming, Levann, Asha Maria Rudjord, Bagdonaite, Ieva , Vakhrushev, Sergey, Brakebusch, Cord Herbert, Olsen, Jesper Velgaard & Wandall, Hans H., 2022, In: Science Signaling. 15, 761, eabo2206.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes

      Ye, Z., Sabatier, Pierre Camille, Martin Gonzalez, Javier, Eguchi, A., Lechner, Maico Yannic, Østergaard, Ole, Xie, J., Guo, Y., Schultz, L., Truffer, R., Bekker-Jensen, D. B., Bache, N. & Olsen, Jesper Velgaard, 2024, In: Nature Communications. 15, 1, 10 p., 2474.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      A deeper look at carrier proteome effects for single-cell proteomics

      Ye, Z., Batth, Tanveer Singh, Rüther, P. & Olsen, Jesper Velgaard, 2022, In: Communications Biology . 5, 8 p., 150.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Profiling the phospho-status of the BKCa channel alpha subunit in rat brain reveals unexpected patterns and complexity

      Yan, J., Olsen, Jesper Velgaard, Park, K., Li, W., Bildl, W., Schulte, U., Aldrich, R. W., Fakler, B. & Trimmer, J. S., 2008, In: Molecular and Cellular Proteomics. 7, 11, p. 2188-98 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines Relevant for Genome Stability

      Xiao, Z., Chang, J., Hendriks, I. A., Sigurdsson, J. O., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 1 May 2015, In: Molecular and Cellular Proteomics. 14, 5, p. 1419-1434

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      GLP-1R signaling neighborhoods associate with the susceptibility to adverse drug reactions of incretin mimetics

      Wright, S. C., Motso, A., Koutsilieri, S., Beusch, C. M., Sabatier, Pierre Camille, Berghella, A., Blondel-Tepaz, É., Mangenot, K., Pittarokoilis, I., Sismanoglou, D. C., Le Gouill, C., Olsen, Jesper Velgaard, Zubarev, R. A., Lambert, N. A., Hauser, Alexander Sebastian, Bouvier, M. & Lauschke, V. M., 2023, In: Nature Communications. 14, 1, 13 p., 6243.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Enamel proteome shows that Gigantopithecus was an early diverging pongine

      Welker, Frido, Ramos Madrigal, Jazmin, Kuhlwilm, M., Liao, W., Gutenbrunner, P., de Manuel, M., Samodova-Sommer, Diana, Mackie, Meaghan, Allentoft, Morten Erik, Bacon, A., Collins, Matthew James, Cox, J., Lalueza-Fox, C., Olsen, Jesper Velgaard, Demeter, Fabrice, Wang, W., Marques-Bonet, T. & Cappellini, Enrico, 2019, In: Nature. 576, p. 262-265

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Ancient proteins resolve the evolutionary history of Darwin's South American ungulates

      Welker, F., Collins, M. J., Thomas, J. A., Wadsley, M., Brace, S., Cappellini, E., Turvey, S. T., Reguero, M., Gelfo, J. N., Kramarz, A., Burger, J., Thomas-Oates, J., Ashford, D. A., Ashton, P. D., Rowsell, K., Porter, D. M., Kessler, B., Fischer, R., Baessmann, C., Kaspar, S. & 11 others, Olsen, Jesper Velgaard, Kiley, P., Elliott, J. A., Kelstrup, C. D., Mullin, V., Hofreiter, M., Willerslev, Eske, Hublin, J., Orlando, L., Barnes, I. & MacPhee, R. D. E., 4 Jun 2015, In: Nature. 522, 7554, p. 81–84 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      The dental proteome of Homo antecessor: {with Author Correction]

      Welker, F., Ramos-Madrigal, J., Gutenbrunner, P., Mackie, M., Tiwary, S., Rakownikow Jersie-Christensen, R., Chiva, C., Dickinson, M. R., Kuhlwilm, M., de Manuel, M., Gelabert, P., Martinón-Torres, M., Margvelashvili, A., Arsuaga, J. L., Carbonell, E., Marques-Bonet, T., Penkman, K., Sabidó, E., Cox, J., Olsen, J. V. & 6 others, Lordkipanidze, D., Racimo, Fernando, Lalueza-Fox, C., Bermúdez de Castro, J. M., Willerslev, Eske & Cappellini, Enrico, Apr 2020, In: Nature. 580, 7802, p. 235-238 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Palaeoproteomic analysis of Early Pleistocene Gigantopithecus blacki

      Welker, Frido, Ramos Madrigal, Jazmin, Wang, W., Kuhlwilm, M., Montero, M. D. M., Demeter, Fabrice, Lalueza-Fox, C., Marques-Bonet, T., Olsen, Jesper Velgaard & Cappellini, Enrico, Mar 2019, In: American Journal of Physical Anthropology. 168, suppl. 68, p. 265-266

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    18. Published

      The phosphoproteome of toll-like receptor-activated macrophages

      Weintz, G., Olsen, Jesper Velgaard, Frühauf, K., Niedzielska, M., Amit, I., Jantsch, J., Mages, J., Frech, C., Dölken, L., Mann, M. & Lang, R., 8 Jun 2010, In: Molecular Systems Biology. 6, p. 371

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation

      Weinert, B. T., Wagner, S. A., Horn, H., Henriksen, P., Liu, W. R., Olsen, Jesper Velgaard, Jensen, Lars Juhl & Choudhary, Chunaram, 2011, In: Science Signaling. 4, 183, p. ra48

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington

      Waters, M. R., Stafford jr., T., McDonald, H. G., Gustafson, C., Rasmussen, M., Cappellini, Enrico, Olsen, Jesper Velgaard, Szklarczyk, D. M., Jensen, Lars Juhl, Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Science. 334, 6054, p. 351-353 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Atypical cofilin signaling drives dendritic cell migration through the extracellular matrix via nuclear deformation

      Warner, H., Franciosa, Giulia, van der Borg, G., Coenen, B., Faas, Felix, Koenig, Claire, de Boer, R., Classens, R., Maassen, S., Baranov, M. V., Mahajan, S., Dabral, D., Bianchi, F., van Hilten, N., Risselada, H. J., Roos, W. H., Olsen, Jesper Velgaard, Cano, L. Q. & van den Bogaart, G., 2024, In: Cell Reports. 43, 3, 28 p., 113866.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Pathogens and host immunity in the ancient human oral cavity

      Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S. & 12 others, Teoh, K. Y., Kelstrup, C., Olsen, Jesper Velgaard, Nanni, P., Kawai, T., Willerslev, Eske, von Mering, C., Lewis, C. M., Collins, M. J., Gilbert, M Thomas P, Rühli, F. & Cappellini, Enrico, 2014, In: Nature Genetics. 46, p. 336-344 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Direct evidence of milk consumption from ancient human dental calculus

      Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, N., Craig, O., Swallow, D. M., Fotakis, A. K., Christensen, R. J., Olsen, J. V., Liebert, A., Montalva, N., Fiddyment, S., Mackie, M., Canci, A., Bouwman, A., Ruhli, F. & 2 others, Gilbert, M Thomas P & Collins, M. J., 2015, In: American Journal of Physical Anthropology. 156, Suppl. 60, p. 319 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    24. Published

      Direct evidence of milk consumption from ancient human dental calculus

      Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, N., Craig, O. E., Swallow, D. M., Fotakis, A. K., Jersie-Christensen, R. R., Olsen, J. V., Liebert, A., Montalva, N., Fiddyment, S., Charlton, S., Mackie, M. E., Canci, A., Bouwman, A. & 3 others, Rühli, F., Gilbert, M Thomas P & Collins, M. J., 2014, In: Scientific Reports. 4, 6 p., 7104.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      qcML: an exchange format for quality control metrics from mass spectrometry experiments

      Walzer, M., Pernas, L. E., Nasso, S., Bittremieux, W., Nahnsen, S., Kelchtermans, P., Pichler, P., van den Toorn, H. W. P., Staes, A., Vandenbussche, J., Mazanek, M., Taus, T., Scheltema, R. A., Kelstrup, C. D., Gatto, L., van Breukelen, B., Aiche, S., Valkenborg, D., Laukens, K., Lilley, K. S. & 9 others, Olsen, Jesper Velgaard, Heck, A. J. R., Mechtler, K., Aebersold, R., Gevaert, K., Vizcaino, J. A., Hermjakob, H., Kohlbacher, O. & Martens, L., 23 Apr 2014, In: Molecular & Cellular Proteomics. 13, 8, p. 1905-1913 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Yeast expression proteomics by high-resolution mass spectrometry

      Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In: Methods in Enzymology. 470, p. 259-80 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Proteomic analyses reveal divergent ubiquitylation site patterns in murinetissues

      Wagner, S. A., Beli, P., Weinert, B. T., Schölz, C. F., Kelstrup, C. D., Young, C., Nielsen, Michael Lund, Olsen, Jesper Velgaard, Brakebusch, Cord Herbert & Choudhary, Chunaram, 2012, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      RNF4 is required for DNA double-strand break repair in vivo

      Vyas, R., Kumar, R., Clermont, F., Helfricht, A., Kalev, P., Sotiropoulou, P., Hendriks, I. A., Radaelli, E., Hochepied, T., Blanpain, C., Sablina, A., van Attikum, H., Olsen, Jesper Velgaard, Jochemsen, A. G., Vertegaal, A. C. O. & Marine, J., Mar 2013, In: Cell Death and Differentiation. 20, 3, p. 490-502 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      ZAKα Recognizes Stalled Ribosomes through Partially Redundant Sensor Domains

      Vind, Anna Constance, Snieckute, Goda, Blasius, Melanie, Tiedje, C., Krogh, Nicolai, Bekker-Jensen, D. B., Andersen, Kasper Langebjerg, Nordgaard, C., Tollenaere, M. A. X., Lund, Anders H., Olsen, Jesper Velgaard, Nielsen, Henrik & Bekker-Jensen, Simon Holst, 2020, In: Molecular Cell. 78, 4, p. 700-713.E7

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

      Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K. K., Olsen, Jesper Velgaard, Hyman, A. A., Stunnenberg, H. G. & Mann, M., 17 Sep 2010, In: Cell. 142, 6, p. 967-80 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      Genomic and proteomic evidence for Mycobacterium leprae in human medieval dental calculus from Trondheim, Norway

      Vagene, A. J., Fotaki, Anna Katerina, Denham, S. D., Orbegozo, M., Mackie, Meaghan, Olsen, Jesper Velgaard, Cappellini, Enrico, Christophersen, A. & Gilbert, M Thomas P, 2020, In: American Journal of Physical Anthropology. 171, p. 291 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    32. Published

      Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

      Tyanova, S., Frishman, D., Cox, J., Mann, Matthias & Olsen, Jesper Velgaard, 10 Jan 2013, In: P L o S Computational Biology (Online). 9, 1, p. e1002842 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Published

      Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog

      Tsutaya, T., Mackie, Meaghan, Koenig, C., Sato, T., Weber, A. W., Kato, H., Olsen, Jesper Velgaard & Cappellini, Enrico, 2019, In: Scientific Reports. 9, 7 p., 12841.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Faecal proteomics as a novel method to study mammalian behaviour and physiology

      Tsutaya, T., Mackie, Meaghan, Sawafuji, R., Miyabe-Nishiwaki, T., Olsen, Jesper Velgaard & Cappellini, Enrico, 2021, In: Molecular Ecology Resources. 21, 6, p. 1808-1819 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Alternative translation initiation generates a functionally distinct isoform of the stress-activated kinase MK2

      Trulley, P., Snieckute, Goda, Bekker-Jensen, D. B., Menon, M. B., Freund, R., Kotlyarov, A., Olsen, Jesper Velgaard, Diaz-Muñoz, M. D., Turner, M., Bekker-Jensen, Simon Holst, Gaestel, M. & Tiedje, C., 2018, bioRxiv, 46 p. (bioRxiv).

      Research output: Working paper › Preprint › Research

    36. Published

      Alternative Translation Initiation Generates a Functionally Distinct Isoform of the Stress-Activated Protein Kinase MK2

      Trulley, P., Snieckute, Goda, Bekker-Jensen, D., Menon, M. B., Freund, R., Kotlyarov, A., Olsen, Jesper Velgaard, Diaz-Muñoz, M. D., Turner, M., Bekker-Jensen, Simon Holst, Gaestel, M. & Tiedje, C., 2019, In: Cell Reports. 27, 10, p. 2859-2870.e6 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation

      Tomioka, R., Tomioka, A., Ogata, K., Chan, H. J., Chen, L. Y., Hernández Guzmán, Ulises, Xuan, Y., Olsen, Jesper Velgaard, Chen, Y. J. & Ishihama, Y., 2024, In: Journal of the American Society for Mass Spectrometry. 35, 2, p. 386-396 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      GIGYF1/2-Driven Cooperation between ZNF598 and TTP in Posttranscriptional Regulation of Inflammatory Signaling

      Tollenaere, M. A. X., Tiedje, C., Rasmussen, S., Nielsen, J. C., Vind, Anna Constance, Blasius, Melanie, Batth, Tanveer Singh, Mailand, Niels, Olsen, Jesper Velgaard, Gaestel, M. & Bekker-Jensen, Simon Holst, 2019, In: Cell Reports. 26, 13, p. 3511-3521.e4 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      The SH2 domain interaction landscape

      Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      The PI3-kinase isoform p110δ is essential for cell transformation induced by the D816V mutant of c-Kit in a lipid-kinase-independent manner

      Sun, J., Mohlin, S., Lundby, Alicia, Kazi, J. U., Hellman, U., Påhlman, S., Olsen, Jesper Velgaard & Rönnstrand, L., 11 Nov 2013, In: Oncogene.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      Analysis of Changes in SUMO-2/3 Modification during Breast Cancer Progression and Metastasis

      Subramonian, D., Raghunayakula, S., Olsen, Jesper Velgaard, Beningo, K. A., Paschen, W. & Zhang, X., Sep 2014, In: Journal of Proteome Research. 13, 9, p. 3905–3918 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Electron capture dissociation of singly and multiply phosphorylated peptides

      Stensballe, A., Jensen, O. N., Olsen, Jesper Velgaard, Haselmann, K. F. & Zubarev, R. A., 2000, In: Rapid Communications in Mass Spectrometry. 14, 19, p. 1793-800 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      PKD Phosphorylation as Novel Pathway of KV11.1 Regulation

      Steffensen, Annette Buur, Bomholtz, Sofia Hammami, Andersen, M. N., Olsen, Jesper Velgaard, Mutsaers, N., Lundegaard, Pia Rengtved, Lundby, Alicia & Schmitt, Nicole, 2018, In: Cellular Physiology and Biochemistry. 47, 4, p. 1742-1750 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Structures of down syndrome kinases, DYRKs, reveal mechanisms of kinase activation and substrate recognition

      Soundararajan, M., Roos, A. K., Savitsky, P., Filippakopoulos, P., Kettenbach, A. N., Olsen, Jesper Velgaard, Gerber, S., Eswaran, J., Knapp, S. & Elkins, J. M., 4 Jun 2013, In: Structure. 21, 6, p. 986-996 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      Global analysis of the yeast osmotic stress response by quantitative proteomics

      Soufi, B., Kelstrup, C. D., Stoehr, G., Fröhlich, F., Walther, T. C. & Olsen, Jesper Velgaard, 2009, In: Molecular BioSystems. 5, 11, p. 1337-46 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      ROS-induced ribosome impairment underlies ZAKα-mediated metabolic decline in obesity and aging

      Snieckute, G., Ryder, L., Vind, A. C., Wu, Z., Arendrup, F. S., Stoneley, M., Chamois, S., Martinez-Val, A., Leleu, M., Dreos, R., Russell, A., Gay, D. M., Genzor, A. V., Choi, B. S-Y., Basse, A. L., Sass, F., Dall, M., Dollet, L. C. M., Blasius, M., Willis, A. E. & 10 others, Lund, Anders H., Treebak, Jonas Thue, Olsen, Jesper Velgaard, Poulsen, Steen Seier, Pownall, M. E., Jensen, Benjamin Anderschou Holbech, Clemmensen, Christoffer, Gerhart-Hines, Zach, Gatfield, D. & Bekker-Jensen, Simon Holst, 2023, In: Science (New York, N.Y.). 382, 6675, 14 p., eadf3208.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. In-gel digestion for mass spectrometric characterization of proteins and proteomes

      Shevchenko, A., Tomas, H., Havlis, J., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Nature Protocols (Print Edition). 1, 6, p. 2856-60 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Proteomics strategy for quantitative protein interaction profiling in cell extracts

      Sharma, K., Weber, C., Bairlein, M., Greff, Z., Kéri, G., Cox, J., Olsen, Jesper Velgaard & Daub, H., 2009, In: Nature Methods. 6, 10, p. 741-4 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Conformation-specific anti-Mad2 monoclonal antibodies for the dissection of checkpoint signaling

      Sedgwick, G. G., Larsen, Marie Sofie Yoo, Lischetti, T., Streicher, W., Jersie-Christensen, R. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2016, In: mAbs. 8, 4, p. 689-697 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Analytic framework for peptidomics applied to large-scale neuropeptide identification

      Secher, A., Kelstrup, C. D., Conde-Frieboes, K. W., Pyke, C., Raun, K., Wulff, B. S. & Olsen, Jesper Velgaard, 2016, In: Nature Communications. 7, 10 p., 11436.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Published

      Ancient biomolecules reveal ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from Sicily

      Scorrano, Gabriele, Nielsen, S. H., Lo Vetro, D., Mackie, Meaghan, Fabbri, P. F., Allentoft, Morten Erik, Martini, F., Martanez-Labarga, C., Rickards, O., Olsen, Jesper Velgaard, Willerslev, Eske, Cappellini, Enrico & Sikora, Martin, 2020, p. 255-255.

      Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

    52. Published

      Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave (Sicily, Italy)

      Scorrano, Gabriele, Nielsen, Sofie Holtsmark, Vetro, D. L., Sawafuji, R., Mackie, Meaghan, Margaryan, Ashot, Fotaki, Anna Katerina, Martínez-Labarga, C., Fabbri, P. F., Allentoft, Morten Erik, Carra, M., Martini, F., Rickards, O., Olsen, Jesper Velgaard, Pedersen, Mikkel Winther, Cappellini, Enrico & Sikora, Martin, 2022, In: Communications Biology. 5

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      Comprehensive Identification of SUMO2/3 Targets and Their Dynamics during Mitosis

      Schou, J., Kelstrup, C. D., Hayward, D. G., Olsen, Jesper Velgaard & Nilsson, Jakob, 27 Jun 2014, In: PLOS ONE. 9, 6, p. e100692 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Published

      Identification of animal species in skin clothing from museum collections

      Schmidt, A. L., Gilbert, M Thomas P, Cappellini, Enrico & Olsen, Jesper Velgaard, 2011. 8 p.

      Research output: Contribution to conference › Paper › Research › peer-review

    55. Published

      Uncovering SUMOylation Dynamics during Cell-Cycle Progression Reveals FoxM1 as a Key Mitotic SUMO Target Protein

      Schimmel, J., Eifler, K., Sigurdsson, J. O., Cuijpers, S. A. G., Hendriks, I. A., Verlaan-de Vries, M., Kelstrup, C. D., Francavilla, C., Medema, R. H., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 20 Mar 2014, In: Molecular Cell. 53, 6, p. 1053-1066

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. A mass spectrometry-friendly database for cSNP identification

      Schandorff, S., Olsen, Jesper Velgaard, Bunkenborg, J., Blagoev, B., Zhang, Y., Andersen, J. S. & Mann, Matthias, 2007, In: Nature Methods. 4, 6, p. 465-6 1 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      Proteomic profiling of archaeological human bone

      Sawafuji, R., Cappellini, Enrico, Nagaoka, T., Fotaki, Anna Katerina, Jersie-Christensen, R. R., Olsen, Jesper Velgaard, Hirata, K. & Ueda, S., Jun 2017, In: Royal Society Open Science. 4, 6, 12 p., 161004.

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Published

      Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor

      Sanchez-Quiles, V., Akimov, V., Osinalde, N., Francavilla, C., Puglia, M., Barrio-Hernandez, I., Kratchmarova, I., Olsen, Jesper Velgaard & Blagoev, B., Aug 2017, In: Molecular and Cellular Proteomics. 16, 8, p. 1433-1446 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. Published

      Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of action

      Sampadi, B., Pines, A., Munk, S., Mišovic, B., de Groot, A. J., van de Water, B., Olsen, Jesper Velgaard, Mullenders, L. H. F. & Vrieling, H., 2020, In: Archives of Toxicology. 94, p. 1655-1671 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Published

      Divergent Molecular and Cellular Responses to Low and High-Dose Ionizing Radiation

      Sampadi, B., Vermeulen, S., Mišovic, B., Boei, J. J., Batth, Tanveer Singh, Chang, J. G., Paulsen, M. T., Magnuson, B., Schimmel, J., Kool, H., Olie, C. S., Everts, B., Vertegaal, A. C. O., Olsen, Jesper Velgaard, Ljungman, M., Jeggo, P. A., Mullenders, L. H. F. & Vrieling, H., 2022, In: Cells. 11, 23, 25 p., 3794.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Published

      ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping

      Samodova-Sommer, Diana, Hosfield, C. M., Cramer, C. N., Giuli, M. V., Cappellini, Enrico, Franciosa, Giulia, Rosenblatt, M. M., Kelstrup, C. D. & Olsen, Jesper Velgaard, 2020, In: Molecular & Cellular Proteomics. 19, 12, 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. Published

      SPIN enables high throughput species identification of archaeological bone by proteomics

      Rüther, P. L., Husic, I. M., Bangsgaard, Pernille, Gregersen, K. M., Pantmann, P., Carvalho, M., Godinho, R. M., Friedl, L., Cascalheira, J., Taurozzi, Alberto John, Jørkov, M L S, Benedetti, M. M., Haws, J., Bicho, N., Welker, Frido, Cappellini, Enrico & Olsen, Jesper Velgaard, 2022, In: Nature Communications. 13, 14 p., 2458.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. Published

      Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology

      Rydbirk, R., Østergaard, O., Folke, J., Hempel, C., DellaValle, B., Andresen, T. L., Løkkegaard, A., Hejl, A-M., Bode, M., Blaabjerg, M., Møller, M., Danielsen, E. H., Salvesen, L., Starhof, C. C., Bech, S., Winge, K., Rungby, J., Pakkenberg, B., Brudek, T., Olsen, J. V. & 1 others, Aznar, S., 2022, In: Cellular and Molecular Life Sciences. 79, 6, 22 p., 336.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Published

      Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium

      Russo, D. A., Zedler, J. A. Z., Wittmann, D. N., Möllers, B., Singh, R. K., Batth, Tanveer Singh, van Oort, B., Olsen, Jesper Velgaard, Bjerrum, Morten Jannik & Jensen, Poul Erik, 2019, In: Biotechnology for Biofuels. 12, 1, 13 p., 74.

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. Published

      Galectin-1 induces a tumor-associated macrophage phenotype and upregulates indoleamine 2,3-dioxygenase-1

      Levann, Asha Maria Rudjord, Ye, Z., Hafkenscheid, L., Horn, S., Wiegertjes, R., Nielsen, Mathias Alexander Ingemann, Song, Ming, Mathiesen, C. B. K., Stoop, J., Stowell, S., Straten, P. T., Leffler, H., Vakhrushev, Sergey, Dabelsteen, Sally, Olsen, Jesper Velgaard & Wandall, Hans H., 2023, In: iScience. 26, 7, 21 p., 106984.

      Research output: Contribution to journal › Journal article › Research › peer-review

    66. Published

      The Role of TTP Phosphorylation in the Regulation of Inflammatory Cytokine Production by MK2/3

      Ronkina, N., Shushakova, N., Tiedje, C., Yakovleva, T., Tollenaere, M. A. X., Scott, A., Batth, Tanveer Singh, Olsen, Jesper Velgaard, Helmke, A., Bekker-Jensen, Simon Holst, Clark, A. R., Kotlyarov, A. & Gaestel, M., 2019, In: Journal of immunology (Baltimore, Md. : 1950). 203, 8, p. 2291-2300 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Published

      System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

      Rigbolt, K. T. G., Prokhorova, T., Akimov, V., Løkkegaard, Jeanette, Johansen, P. T., Kratchmarova, I., Kassem, M. S. E., Mann, Matthias, Olsen, Jesper Velgaard & Blagoev, B., 2011, In: Science Signaling. 4, 164, p. rs3

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

      Rasmussen, M. H., Lyskjær, I., Jersie-Christensen, R. R., Tarpgaard, L. S., Primdal-Bengtson, B., Nielsen, M. M., Pedersen, J. S., Kuhlmann, Tine Plato, Hansen, F., Olsen, Jesper Velgaard, Pfeiffer, P., Ørntoft, T. F. & Andersen, C. L., 2016, In: Nature Communications. 7, 15 p., 12436.

      Research output: Contribution to journal › Journal article › Research › peer-review

    69. Published

      PRIME-XS, a European infrastructure for proteomics

      Raijmakers, R., Olsen, Jesper Velgaard, Aebersold, R. & Heck, A. J. R., 23 Jun 2014, In: Molecular & Cellular Proteomics. 13, 8, p. 1901-1904 4 p.

      Research output: Contribution to journal › Editorial › Research › peer-review

    70. Published

      Combinatorial Drug Screening Identifies Ewing Sarcoma–specific Sensitivities

      Radic-Sarikas, B., Tsafou, K. P., Emdal, Kristina Bennet, Papamarkou, T., Huber, K. V. M., Mutz, C., Toretsky, J. A., Bennett, K. L., Olsen, Jesper Velgaard, Brunak, S., Kovar, H. & Superti-Furga, G., Jan 2017, In: Molecular Cancer Therapeutics. 16, 1, p. 88-101 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Published

      Immature truncated O-glycophenotype of cancer directly induces oncogenic features

      Radhakrishnan, P., Dabelsteen, S., Madsen, F. B., Francavilla, C., Kopp, K. L., Steentoft, C., Vakhrushev, S. Y., Olsen, J. V., Hansen, L., Bennett, E. P., Woetmann, A., Yin, G., Chen, L., Song, H., Bak, M., Hlady, R. A., Peters, S. L., Opavsky, R., Thode, C., Qvortrup, K. & 4 others, Schjoldager, Katrine Ter-Borch Gram, Clausen, Henrik, Hollingsworth, M. A. & Wandall, Hans H., 12 Aug 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 39, p. e4066-e4077 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. Published

      Palaeoproteomics resolves sloth relationships

      Presslee, S., Slater, G. J., Pujos, F., Forasiepi, A. M., Fischer, R., Molloy, K., Mackie, M., Olsen, J. V., Kramarz, A., Taglioretti, M., Scaglia, F., Lezcano, M., Lanata, J. L., Southon, J., Feranec, R., Bloch, J., Hajduk, A., Martin, F. M., Salas Gismondi, R., Reguero, M. & 6 others, de Muizon, C., Greenwood, A., Chait, B. T., Penkman, K., Collins, Matthew James & MacPhee, R. D. E., 2019, In: Nature Ecology & Evolution. 3, p. 1121-1130

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. Published

      Quantitative proteomics characterization of acutely isolated primary adult rat cardiomyocytes and fibroblasts

      Poulsen, P. C., Schrölkamp, Maren, Bagwan, N., Leurs, U., Humphries, E. S. A., Bomholzt, S. H., Nielsen, Morten Schak, Bentzen, Bo Hjorth, Olsen, Jesper Velgaard & Lundby, Alicia, 2020, In: Journal of Molecular and Cellular Cardiology. 143, p. 63-70 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability

      Pladevall Morera, David, Munk, S., Ingham, Andreas, Garribba, L., Albers, E., Liu, Ying, Olsen, Jesper Velgaard & Lopez-Contreras, Andres, 2019, In: Nucleic Acids Research. 47, 15, p. 8004-8018 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Published

      A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation

      Pirone, L., Xolalpa, W., Sigurdsson, J. O., Ramirez, J., Pérez, C., González, M., de Sabando, A. R., Elortza, F., Rodriguez, M. S., Mayor, U., Olsen, Jesper Velgaard, Barrio, R. & Sutherland, J. D., 2017, In: Scientific Reports. 7, 17 p., 40756.

      Research output: Contribution to journal › Journal article › Research › peer-review

    76. Published

      The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA

      Pinto, R., Vågbø, C. B., Jakobsson, M. E., Kim, Y., Baltissen, M. P., O'Donohue, M., Hernández Guzmán, Ulises, Małecki, J. M., Wu, J., Kirpekar, F., Olsen, Jesper Velgaard, Gleizes, P., Vermeulen, M., Leidel, S. A., Slupphaug, G. & Falnes, P. Ø., 2020, In: Nucleic Acids Research. 48, 2, p. 830-846 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. Published

      Global phosphoproteome profiling reveals unanticipated networks responsive to cisplatin treatment of embryonic stem cells

      Pines, A., Kelstrup, C. D., Vrouwe, M. G., Puigvert, J. C., Typas, D., Misovic, B., de Groot, A., von Stechow, L., van de Water, B., Danen, E. H. J., Vrieling, H., Mullenders, L. H. F. & Olsen, Jesper Velgaard, 2011, In: Molecular and Cellular Biology. 31, 24, p. 4964-77 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. SUMO modification of the ubiquitin-conjugating enzyme E2-25K

      Pichler, A., Knipscheer, P., Oberhofer, E., van Dijk, W. J., Körner, R., Olsen, Jesper Velgaard, Jentsch, S., Melchior, F. & Sixma, T. K., 2005, In: Nature Structural and Molecular Biology. 12, 3, p. 264-9 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    79. Published

      KIT(D816V) Induces SRC-Mediated Tyrosine Phosphorylation of MITF and Altered Transcription Program in Melanoma

      Phung, B., Kazi, J. U., Lundby, Alicia, Bergsteinsdottir, K., Sun, J., Goding, C. R., Jönsson, G., Olsen, Jesper Velgaard, Steingrímsson, E. & Rönnstrand, L., 2017, In: Molecular cancer research : MCR. 15, 9, p. 1265-1274 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    80. Published

      Optimizing Linear Ion-Trap Data-Independent Acquisition toward Single-Cell Proteomics

      Phlairaharn, T., Ye, Z., Krismer, Elena, Pedersen, Anna-Kathrine, Pietzner, M., Olsen, Jesper Velgaard, Schoof, E. M. & Searle, B. C., 2023, In: Analytical Chemistry. 95, 26, p. 9881-9891 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    81. Published

      Phosphorylation of SHP2 at Tyr62 enables acquired resistance to SHP2 allosteric inhibitors in FLT3-ITD-driven AML

      Pfeiffer, A., Franciosa, Giulia, Locard-Paulet, Marie, Piga, I., Reckzeh, K., Vemulapalli, V., Blacklow, S. C., Theilgaard-Mønch, Kim, Jensen, Lars Juhl & Olsen, Jesper Velgaard, 2022, In: Cancer Research. 82, 11, p. 2141-2155 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    82. Published

      B-lymphoid tyrosine kinase (Blk) is an oncogene and a potential target for therapy with Dasatinib in cutaneous T-cell lymphoma (CTCL)

      Petersen, D. L., Krejsgaard, T., Berthelsen, J., Fredholm, S., Willerslev-Olsen, A., Sibbesen, N. A., Bonefeld, Charlotte Menne, Andersen, M. H., Francavilla, C., Olsen, Jesper Velgaard, Hu, T., Zhang, M., Wasik, M. A., Geisler, Carsten, Woetmann, Anders & Ødum, Niels, 12 Jun 2014, In: Leukemia. 28, p. 2109-12 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    83. Published

      Proteomic investigation of Cbl and Cbl-b in neuroblastoma cell differentiation highlights roles for SHP-2 and CDK16

      Pedersen, Anna-Kathrine, Pfeiffer, A., Karemore, G., Akimov, V., Bekker-Jensen, D. B., Blagoev, B., Francavilla, C. & Olsen, Jesper Velgaard, 2021, In: iScience. 24, 4, 34 p., 102321.

      Research output: Contribution to journal › Journal article › Research › peer-review

    84. Published

      The ubiquitin ligase Cullin5SOCS2 regulates NDR1/STK38 stability and NF-κB transactivation

      Paul, I., Batth, Tanveer Singh, Iglesias Gato, Diego, Al-Araimi, A., Al-Haddabi, I., Alkharusi, A., Norstedt, G., Olsen, Jesper Velgaard, Zadjali, F. & Flores-Morales, A., 2017, In: Scientific Reports. 7, 14 p., 42800.

      Research output: Contribution to journal › Journal article › Research › peer-review

    85. Published

      Repurposing the antipsychotic drug amisulpride for targeting synovial fibroblast activation in arthritis

      Papadopoulou, D., Roumelioti, F., Tzaferis, C., Chouvardas, P., Pedersen, Anna-Kathrine, Charalampous, F., Christodoulou-Vafeiadou, E., Ntari, L., Karagianni, N., Denis, M. C., Olsen, Jesper Velgaard, Matralis, A. N. & Kollias, G., 2023, In: JCI insight. 8, 9, 18 p., e165024.

      Research output: Contribution to journal › Journal article › Research › peer-review

    86. Published

      Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

      Pan, C., Olsen, Jesper Velgaard, Daub, H. & Mann, Matthias, 2009, In: Molecular and Cellular Proteomics. 8, 12, p. 2796-808 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    87. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

      Pan, C., Gnad, F., Olsen, Jesper Velgaard & Mann, Matthias, 2008, In: Proteomics. 8, 21, p. 4534-46 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    88. Published

      Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

      Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    89. Large-scale proteomics analysis of the human kinome

      Oppermann, F. S., Gnad, F., Olsen, Jesper Velgaard, Hornberger, R., Greff, Z., Kéri, G., Mann, M. & Daub, H., 2009, In: Molecular and Cellular Proteomics. 8, 7, p. 1751-64 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    90. Comparison of electron capture dissociation and collisionally activated dissociation of polycations of peptide nucleic acids

      Olsen, Jesper Velgaard, Haselmann, K. F., Nielsen, Michael Lund, Budnik, B. A., Nielsen, P. E. & Zubarev, R. A., 2001, In: Rapid Communications in Mass Spectrometry. 15, 12, p. 969-74 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain

      Olsen, Jesper Velgaard, Andersen, J. R., Nielsen, P. A., Nielsen, Michael Lund, Figeys, D., Mann, Matthias & Wisniewski, J. R., Jan 2004, In: Molecular and Cellular Proteomics. 3, 1, p. 82-92 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. Higher-energy C-trap dissociation for peptide modification analysis

      Olsen, Jesper Velgaard, Macek, B., Lange, O., Makarov, A., Horning, S. & Mann, Matthias, 2007, In: Nature Methods. 4, 9, p. 709-12 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels

      Olsen, Jesper Velgaard, Nielsen, P. A., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2007, In: Brain Research. 1134, 1, p. 95-106 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    94. Trypsin cleaves exclusively C-terminal to arginine and lysine residues

      Olsen, Jesper Velgaard, Ong, S. & Mann, Matthias, 2004, In: Molecular and Cellular Proteomics. 3, 6, p. 608-14 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    95. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

      Olsen, Jesper Velgaard, Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P. & Mann, Matthias, 2006, In: Cell. 127, 3, p. 635-48 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

      Olsen, Jesper Velgaard, de Godoy, L. M. F., Li, G., Macek, B., Mortensen, P., Pesch, R., Makarov, A., Lange, O., Horning, S. & Mann, Matthias, 2005, In: Molecular and Cellular Proteomics. 4, 12, p. 2010-21 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    97. Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

      Olsen, Jesper Velgaard & Mann, Matthias, 2004, In: Proceedings of the National Academy of Science of the United States of America. 101, 37, p. 13417-22 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. A dual pressure linear ion trap orbitrap instrument with very high sequencing speed

      Olsen, Jesper Velgaard, Schwartz, J. C., Griep-Raming, J., Nielsen, Michael Lund, Damoc, E., Denisov, E., Lange, O., Remes, P., Taylor, D., Splendore, M., Wouters, E. R., Senko, M., Makarov, A., Mann, Matthias & Horning, S., 2009, In: Molecular and Cellular Proteomics. 8, 12, p. 2759-69 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. High accuracy mass spectrometry in large-scale analysis of protein phosphorylation

      Olsen, Jesper Velgaard & Macek, B., 2009, In: Methods in Molecular Biology. 492, p. 131-42 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Published

      Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

      Olsen, Jesper Velgaard, Vermeulen, M., Santamaria, A., Kumar, C., Miller, M. L., Jensen, Lars Juhl, Gnad, F., Cox, J., Jensen, T. S., Nigg, E. A., Brunak, Søren & Mann, Matthias, 2010, In: Science Signaling. 3, 104, p. ra3 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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