Matthias Mann

Matthias Mann

Professor, head of research, Professor

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    ORCID: 0000-0003-1292-4799

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    1. Published

      The Proteome of Hand Eczema Assessed by Tape Stripping

      Sølberg, J. B. K., Quaade, A. S., Drici, L., Sulek, K., Ulrich, N. H., Løvendorf, Marianne Bengtson, Thyssen, Jacob Pontoppidan, Mann, Matthias, Dyring-Andersen, Beatrice & Johansen, Jeanne Duus, 2023, In: Journal of Investigative Dermatology. 143, p. 1559-1568

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance

      Tain, L. S., Sehlke, R., Jain, C., Chokkalingam, M., Nagaraj, N., Essers, P., Rassner, M., Grönke, S., Froelich, J., Dieterich, C., Mann, Matthias, Alic, N., Beyer, A. & Partridge, L., 15 Sep 2017, In: Molecular Systems Biology. 13, 9, p. 939

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila

      Tain, L. S., Sehlke, R., Meilenbrock, R. L., Leech, T., Paulitz, J., Chokkalingam, M., Nagaraj, N., Grönke, S., Fröhlich, J., Atanassov, I., Mann, Matthias, Beyer, A. & Partridge, L., 21 Apr 2021, In: eLife. 10

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway

      Takahashi, M., Lio, C. J., Campeau, A., Steger, M., Ay, F., Mann, Matthias, Gonzalez, D. J., Jain, M. & Sharma, S., Apr 2021, In: Nature Immunology. 22, 4, p. 485-496 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling

      Tanzer, M. C., Bludau, I., Stafford, C. A., Hornung, V. & Mann, Matthias, 18 Oct 2021, In: Nature Communications. 12, 1, p. 6053

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death

      Tanzer, M. C., Frauenstein, A., Stafford, C. A., Phulphagar, K., Mann, Matthias & Meissner, F., 28 Jan 2020, In: Cell Reports. 30, 4, p. 1260-1270.e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry

      Temu, T., Mann, Matthias, Räschle, M. & Cox, J., 1 May 2016, In: Bioinformatics (Online). 32, 9, p. 1417-9 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      In-Depth Proteomic Map of Innate Lymphoid Cells from Healthy Human Skin and Blood

      Teunissen, M. B. M., Pilgaard Møller, L. B., Løvendorf, Marianne Bengtson, Skov, Lone, Bonefeld, Charlotte Menne, Bekkenk, M. W., Clark, R. A., Mann, Matthias & Dyring-Andersen, Beatrice, 2024, In: Journal of Investigative Dermatology. 144, 2, 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel

      Thielert, M., Itang, E. C. M., Ammar, C., Rosenberger, F. A., Bludau, I., Schweizer, L., Nordmann, T. M., Skowronek, P., Wahle, M., Zeng, W. F., Zhou, X. X., Brunner, A. D., Richter, S., Levesque, M. P., Theis, F. J., Steger, M. & Mann, Matthias, 2023, In: Molecular Systems Biology. 19, 9, 23 p., e11503.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The SH2 domain interaction landscape

      Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation

      Trentini, D. B., Pecoraro, M., Tiwary, S., Cox, J., Mann, Matthias, Hipp, M. S. & Hartl, F. U., 25 Feb 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4099-4108 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

      Tyanova, S., Frishman, D., Cox, J., Mann, Matthias & Olsen, Jesper Velgaard, 10 Jan 2013, In: P L o S Computational Biology (Online). 9, 1, p. e1002842 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. The Perseus computational platform for comprehensive analysis of (prote)omics data

      Tyanova, S., Temu, T., Sinitcyn, P., Carlson, A., Hein, M. Y., Geiger, T., Mann, Matthias & Cox, J., Sep 2016, In: Nature Methods. 13, 9, p. 731-40 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Proteomic maps of breast cancer subtypes

      Tyanova, S., Albrechtsen, Reidar, Kronqvist, P., Cox, J., Mann, Matthias & Geiger, T., 4 Jan 2016, In: Nature Communications. 7, 11 p., 10259.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components

      Ugur, E., de la Porte, A., Qin, W., Bultmann, S., Ivanova, A., Drukker, M., Mann, Matthias, Wierer, M. & Leonhardt, H., 2023, In: Nucleic Acids Research. 51, 6, p. 2671-2690 20 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Neurodevelopmental deficits in human isogenic fragile x syndrome neurons

      Utami, K., Skotte, N. H., Colaco, A. R. -., Yusof, N. A. B. M., Sim, B., Yeo, X. Y., Bae, H., Garcia-Miralles, M., Radulescu, C., Jung, S., Mann, Matthias & Pouladi, M., 2019, In: Journal of Neurochemistry. 150, p. 103 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    17. Published

      Integrative Analysis Identifies Key Molecular Signatures Underlying Neurodevelopmental Deficits in Fragile X Syndrome

      Utami, K. H., Skotte, Niels Henning, Colaço, A. R., Yusof, N. A. B. M., Sim, B., Yeo, X. Y., Bae, H., Garcia-Miralles, M., Radulescu, C. I., Chen, Q., Chaldaiopoulou, G., Liany, H., Nama, S., Peteri, U. A., Sampath, P., Castrén, M. L., Jung, S., Mann, Matthias & Pouladi, M. A., 2020, In: Biological Psychiatry. 88, 6, p. 500-511

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

      Vasilopoulou, C. G., Sulek, K., Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 2020, In: Nature Communications. 11, 1, 11 p., 331.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Reply to "Quality control requirements for the correct annotation of lipidomics data"

      Vasilopoulou, C. G., Sulek, K., Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 2021, In: Nature Communications. 12, 4 p., 4772.

      Research output: Contribution to journal › Journal article › Research

    20. Published

      Urinary proteome profiling for stratifying patients with familial Parkinson’s disease

      Virreira Winter, S., Karayel, O., Strauss, M. T., Padmanabhan, S., Surface, M., Merchant, K., Alcalay, R. N. & Mann, Matthias, 2021, In: EMBO Molecular Medicine. 13, 3, 19 p., e13257.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification

      Virreira Winter, S., Meier, F., Wichmann, C., Cox, J., Mann, Matthias & Meissner, F., 2018, In: Nature Methods. 15, 7, p. 527-530 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. A DNA-Centric Protein Interaction Map of Ultraconserved Elements Reveals Contribution of Transcription Factor Binding Hubs to Conservation

      Viturawong, T., Meissner, F., Butter, F. & Mann, Matthias, 31 Oct 2013, In: Plant Cell Reports. 5, 2, p. 531-45 15 p.

      Research output: Contribution to journal › Journal article › Research

    23. Published

      Molecular Origin of Blood-based Infrared Spectroscopic Fingerprints

      Voronina, L., Leonardo, C., Mueller-Reif, J. B., Geyer, P. E., Huber, M., Trubetskov, M., Kepesidis, K. V., Behr, J., Mann, Matthias, Krausz, F. & Žigman, M., 2021, In: Angewandte Chemie International Edition. 60, 31, p. 17060-17069

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge

      Voytik, E., Bludau, I., Willems, S., Hansen, F. M., Brunner, A., Strauss, Maximilian & Mann, Matthias, 2022, In: Bioinformatics. 38, 3, p. 849-852

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

      Wagner, S. A., Beli, P., Weinert, B. T., Nielsen, Michael Lund, Cox, J., Mann, Matthias & Choudhary, Chunaram, 1 Oct 2011, In: Molecular and Cellular Proteomics. 10, 10, p. M111.013284

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Widespread Proteome Remodeling and Aggregation in Aging C. elegans

      Walther, D. M., Kasturi, P., Zheng, M., Pinkert, S., Vecchi, G., Ciryam, P., Morimoto, R. I., Dobson, C. M., Vendruscolo, M., Mann, Matthias & Hartl, F. U., 23 Feb 2017, In: Cell. 168, 5, p. 944

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Yeast expression proteomics by high-resolution mass spectrometry

      Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In: Methods in Enzymology. 470, p. 259-80 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Association of Complement and MAPK Activation With SARS-CoV-2-Associated Myocardial Inflammation

      Weckbach, L. T., Schweizer, L., Kraechan, A., Bieber, S., Ishikawa-Ankerhold, H., Hausleiter, J., Massberg, S., Straub, T., Klingel, K., Grabmaier, U., Zwiebel, M., Mann, Matthias & Schulz, C., 2022, In: JAMA Cardiology. 7, 3, p. 286-297 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery

      Albrechtsen, Nicolai Jacob Wewer, Geyer, P. E., Doll, S., Treit, P. V., Bojsen-Møller, K. N., Martinussen, C., Jørgensen, N. B., Torekov, Signe Sørensen, Meier, F., Niu, Lili, Santos, A., Keilhauer, E. C., Holst, Jens Juul, Madsbad, Sten & Mann, Matthias, 2018, In: Cell Systems. 7, 6, p. 601-612

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Oxyntomodulin Identified as a Marker of Type 2 Diabetes and Gastric Bypass Surgery by Mass-spectrometry Based Profiling of Human Plasma

      Albrechtsen, Nicolai Jacob Wewer, Hornburg, D., Albrechtsen, Reidar, Svendsen, B., Toräng, S., Jepsen, Sara Lind, Kuhre, Rune Ehrenreich, Hansen, M., Janus, C., Floyd, A., Lund, Asger Bach, Vilsbøll, Tina, Knop, Filip Krag, drb459, drb459, Deacon, Carolyn F., Meissner, F., Mann, Matthias, Holst, Jens Juul & Hartmann, Bolette, May 2016, In: EBioMedicine. 7, p. 112-120 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      MaxQuant.Live enables global targeting of more than 25,000 peptides

      Wichmann, C., Meier, F., Virreira Winter, S., Brunner, A., Cox, J. & Mann, Matthias, 2019, In: Molecular and Cellular Proteomics. 18, 5, p. 982-994 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Proteomic Analysis Identifies NDUFS1 and ATP5O as Novel Markers for Survival Outcome in Prostate Cancer

      Wiebringhaus, R., Pecoraro, M., Neubauer, H. A., Trachtová, K., Trimmel, B., Wieselberg, M., Pencik, J., Egger, G., Krall, C., Moriggl, R., Mann, Matthias, Hantusch, B. & Kenner, L., 30 Nov 2021, In: Cancers. 13, 23

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

      Wierer, M. & Mann, Matthias, 1 Oct 2016, In: Human Molecular Genetics. 25, R2, p. R106-R114

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. A proteomic atlas of the neointima identifies novel druggable targets for preventive therapy

      Wierer, M., Werner, J., Wobst, J., Kastrati, A., Cepele, G., Aherrahrou, R., Sager, H. B., Erdmann, J., Dichgans, M., Flockerzi, V., Civelek, M., Dietrich, A., Mann, Matthias, Schunkert, H. & Kessler, T., 8 Apr 2021, (E-pub ahead of print) In: European Heart Journal.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression

      Wierer, M., Prestel, M., Schiller, H., Yan, G., Schaab, C., Azghandi, S., Werner, J., Kessler, T., Malik, R., Murgia, M., Aherrahrou, Z., Schunkert, H., Dichgans, M. & Mann, Matthias, Feb 2018, In: Molecular and Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories towards type 2 diabetes

      Wigger, L., Barovic, M., Brunner, A-D., Marzetta, F., Schöniger, E., Mehl, F., Kipke, N., Friedland, D., Burdet, F., Kessler, C., Lesche, M., Thorens, B., Bonifacio, E., Legido-Quigley, C., Barbier Saint Hilaire, P., Delerive, P., Dahl, A., Klose, C., Gerl, M. J., Simons, K. & 7 others, Aust, D., Weitz, J., Distler, M., Schulte, A. M., Mann, Matthias, Ibberson, M. & Solimena, M., 28 Jun 2021, (E-pub ahead of print) In: Nature Metabolism.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. AlphaTims: Indexing Trapped Ion Mobility Spectrometry-TOF Data for Fast and Easy Accession and Visualization

      Willems, S., Voytik, E., Skowronek, P., Strauss, Maximilian & Mann, Matthias, 2021, In: Molecular and Cellular Proteomics. 20, p. 100149

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry

      Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotsis, T. & Mann, Matthias, 1 Feb 1996, In: Nature. 379, 6564, p. 466-9 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

      Windeløv, Johanne Agerlin, Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Jepsen, Sara Lind, Hornburg, D., Pedersen, Jens, Jensen, E. P., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Ørgaard, A., Deacon, Carolyn F., Mann, Matthias, Kissow, Hannelouise, Hartmann, Bolette & Holst, Jens Juul, Oct 2017, In: Diabetologia. 60, 10, p. 2066-2075 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. In vivo PDX CRISPR/Cas9 screens reveal mutual therapeutic targets to overcome heterogeneous acquired chemo-resistance

      Wirth, A-K., Wange, L., Vosberg, S., Henrich, K-O., Rausch, C., Özdemir, E., Zeller, C. M., Richter, D., Feuchtinger, T., Kaller, M., Hermeking, H., Greif, P. A., Senft, D., Jurinovic, V., Bahrami, E., Jayavelu, A. K., Westermann, F., Mann, M., Enard, W., Herold, T. & 1 others, Jeremias, I., 2022, In: Leukemia. 36, p. 2863-2874 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma

      Wiśniewski, J. R., Ostasiewicz, P., Duś, K., Zielińska, D. F., Gnad, F. & Mann, Matthias, 1 Jan 2012, In: Molecular Systems Biology. 8, 611.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting

      Wiśniewski, J. R. & Mann, Matthias, 1 Jul 2016, In: Journal of Proteome Research. 15, 7, p. 2321-6 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA

      Woerner, A. C., Frottin, F., Hornburg, D., Feng, L. R., Meissner, F., Patra, M., Tatzelt, J., Mann, Matthias, Winklhofer, K. F., Hartl, F. U. & Hipp, M. S., 8 Jan 2016, In: Science (New York, N.Y.). 351, 6269, p. 173-6 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Dynamics in protein translation sustaining T cell preparedness

      Wolf, T., Jin, W., Zoppi, G., Vogel, I. A., Akhmedov, M., Bleck, C. K. E., Beltraminelli, T., Rieckmann, J. C., Ramirez, N. J., Benevento, M., Notarbartolo, S., Bumann, D., Meissner, F., Grimbacher, B., Mann, Matthias, Lanzavecchia, A., Sallusto, F., Kwee, I. & Geiger, R., 6 Jul 2020, (E-pub ahead of print) In: Nature Immunology.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      Consistency across multi-omics layers in a drug-perturbed gut microbial community

      Wuyts, S., Alves, R., Zimmermann-Kogadeeva, M., Nishijima, S., Blasche, S., Driessen, M., Geyer, P. E., Hercog, R., Kartal, E., Maier, L., Müller, J. B., Garcia Santamarina, S., Schmidt, T. S. B., Sevin, D. C., Telzerow, A., Treit, P. V., Wenzel, T., Typas, A., Patil, K. R., Mann, M. & 2 others, Kuhn, M. & Bork, P., 2023, In: Molecular Systems Biology. 19, 9, 17 p., e11525.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

      Yang, P., Humphrey, S. J., Cinghu, S., Pathania, R., Oldfield, A. J., Kumar, D., Perera, D., Yang, J. Y. H., James, D. E., Mann, Matthias & Jothi, R., 22 May 2019, In: Cell Systems. 8, 5, p. 427-445.e10

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells

      Yin, H., Karayel, O., Chao, Y., Seeholzer, T., Hamp, I., Plettenburg, O., Gehring, T., Zielinski, C., Mann, Matthias & Krappmann, D., 31 Jan 2022, In: Cellular and Molecular Life Sciences. 79, 2, p. 112

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis

      Zanivan, S., Meves, A., Behrendt, K., Schoof, E., Neilson, L. J., Cox, J., Tang, H. R., Kalna, G., van Ree, J. H., van Deursen, J. M., Trempus, C. S., Machesky, L. M., Linding, R., Wickström, S. A., Fässler, R. & Mann, Matthias, 21 Feb 2013, In: Cell Reports. 3, 2, p. 552-566 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers

      Zanivan, S., Maione, F., Hein, M. Y., Hernández-Fernaud, J. R., Ostasiewicz, P., Giraudo, E. & Mann, Matthias, 26 Aug 2013, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Adverse stem cell clones within a single patient's tumor predict clinical outcome in AML patients

      Zeller, C., Richter, D., Jurinovic, V., Valtierra-Gutiérrez, I. A., Jayavelu, A. K., Mann, Matthias, Bagnoli, J. W., Hellmann, I., Herold, T., Enard, W., Vick, B. & Jeremias, I., 12 Mar 2022, In: Journal of Hematology & Oncology. 15, 1, p. 25

      Research output: Contribution to journal › Journal article › Research › peer-review

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