Michael Lund Nielsen

Michael Lund Nielsen

Professor

ORCID: 0000-0002-0067-9039

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  1. A dual pressure linear ion trap orbitrap instrument with very high sequencing speed

    Olsen, Jesper Velgaard, Schwartz, J. C., Griep-Raming, J., Nielsen, Michael Lund, Damoc, E., Denisov, E., Lange, O., Remes, P., Taylor, D., Splendore, M., Wouters, E. R., Senko, M., Makarov, A., Mann, Matthias & Horning, S., 2009, In: Molecular and Cellular Proteomics. 8, 12, p. 2759-69 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Comparison of electron capture dissociation and collisionally activated dissociation of polycations of peptide nucleic acids

    Olsen, Jesper Velgaard, Haselmann, K. F., Nielsen, Michael Lund, Budnik, B. A., Nielsen, P. E. & Zubarev, R. A., 2001, In: Rapid Communications in Mass Spectrometry. 15, 12, p. 969-74 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain

    Olsen, Jesper Velgaard, Andersen, J. R., Nielsen, P. A., Nielsen, Michael Lund, Figeys, D., Mann, Matthias & Wisniewski, J. R., Jan 2004, In: Molecular and Cellular Proteomics. 3, 1, p. 82-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes

    Poulsen, J. W., Madsen, C. T., Young, C., Kelstrup, C. D., Grell, H. C., Henriksen, P., Jensen, Lars Juhl & Nielsen, Michael Lund, 2012, In: Journal of Proteomics. 75, 13, p. 3886-97 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Using guanidine-hydrochloride for fast and efficient protein digestion and single-step affinity-purification mass spectrometry

    Poulsen, J. W., Madsen, C. T., Young, C., Poulsen, F. M. & Nielsen, Michael Lund, 2013, In: Journal of Proteome Research. 12, 2, p. 1020-30 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass

    Povlsen, L. K., Beli, P., Wagner, S. A., Poulsen, S. L., Sylvestersen, K. B., Poulsen, J. W., Nielsen, Michael Lund, Bekker-Jensen, Simon Holst, Mailand, Niels & Choudhary, Chunaram, Oct 2012, In: Nature Cell Biology. 14, 10, p. 1089-98 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Unrestrained poly-ADP-ribosylation provides insights into chromatin regulation and human disease

    Prokhorova, E., Agnew, T., Wondisford, A. R., Tellier, M., Kaminski, N., Beijer, D., Holder, J., Groslambert, J., Suskiewicz, M. J., Zhu, K., Reber, J. M., Krassnig, S. C., Palazzo, L., Murphy, S., Nielsen, Michael Lund, Mangerich, A., Ahel, D., Baets, J., O'Sullivan, R. J. & Ahel, I., 2021, In: Molecular Cell. 81, 12, p. 2640-2655

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Serine-linked PARP1 auto-modification controls PARP inhibitor response

    Prokhorova, E., Zobel, F., Smith, R., Zentout, S., Gibbs-Seymour, I., Schützenhofer, K., Peters, A., Groslambert, J., Zorzini, V., Agnew, T., Brognard, J., Nielsen, Michael Lund, Ahel, D., Huet, S., Suskiewicz, M. J. & Ahel, I., 2021, In: Nature Communications. 12, 1, 12 p., 4055.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Experiences and perspectives of MALDI MS and MS/MS in proteomic research

    Rappsilber, J., Moniatte, M., Nielsen, Michael Lund, Podtelejnikov, A. V. & Mann, M., 2003, In: International Journal of Mass Spectrometry. 226, 1, p. 223-237 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. E-pub ahead of print

    A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates

    Stripp, Alexandra, Hendriks, Ivo Alexander, Elsborg, Jonas Damgaard, Buch-Larsen, Sara Charlotte, Nielsen, C. H., Terslev, L., Kirsch, Rebecca, Damgaard, D., Doncheva, Nadezhda Tsankova, Lennartsson, Caroline Linnea Elin, Rykær, M., Jensen, Lars Juhl, Christophorou, M. A. & Nielsen, Michael Lund, 2024, (E-pub ahead of print) In: Nature Structural and Molecular Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Characterizing citrullination by mass spectrometry-based proteomics

    Stripp, Alexandra, Hendriks, Ivo Alexander & Nielsen, Michael Lund, 2023, In: Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 378, 1890, 14 p., 20220237.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    Regulation of Rad52-dependent replication fork recovery through serine ADP-ribosylation of PolD3

    Richards, F., Llorca-Cardenosa, M. J., Langton, J., Buch-Larsen, Sara Charlotte, Shamkhi, N. F., Sharma, A. B., Nielsen, Michael Lund & Lakin, N. D., 2023, In: Nature Communications. 14, 1, 14 p., 4310.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets

    Rodriguez, K. M., Buch-Larsen, Sara Charlotte, Kirby, I. T., Siordia, I. R., Hutin, D., Rasmussen, M., Grant, D. M., David, L. L., Matthews, J., Nielsen, Michael Lund & Cohen, M. S., 2021, In: eLife. 10, 35 p., e60480.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Electrospray ionization tandem mass spectrometry sequencing of novel skin peptides from Ranid frogs containing disulfide bridges

    Samgina, T., Arternenko, K., Gorshkov, V., Lebedev, A., Nielsen, Michael Lund, Savitski, M. & Zubarev, R., 2007, In: European Journal of Mass Spectrometry. 13, 2, p. 155-163 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells

    Samudyata, Amaral, P. P., Engström, P. G., Robson, S. C., Nielsen, Michael Lund, Kouzarides, T. & Castelo-Branco, G., 2019, In: Experimental Cell Research. 381, 1, p. 129-138 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Proteomics-grade de novo sequencing approach

    Savitski, M. M., Nielsen, Michael Lund, Kjeldsen, F. & Zubarev, R. A., 2005, In: Journal of Proteome Research. 4, 6, p. 2348-2354 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Shifted-basis technique improves accuracy of peak position determination in Fourier transform mass spectrometry

    Savitski, M. M., Ivonin, I. A., Nielsen, Michael Lund, Zubarev, R. A., Tsybin, Y. O. & Hakansson, P., 2004, In: Journal of The American Society for Mass Spectrometry. 15, 4, p. 457-461 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures

    Savitski, M. M., Nielsen, Michael Lund & Zubarev, R. A., 2006, In: Molecular and Cellular Proteomics. 5, 5, p. 935-948 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques

    Savitski, M. M., Nielsen, Michael Lund & Zubarev, R. A., 2005, In: Molecular and Cellular Proteomics. 4, 8, p. 1180-1188 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides

    Savitski, M. M., Kjeldsen, F., Nielsen, Michael Lund & Zubarev, R. A., 2007, In: Journal of The American Society for Mass Spectrometry. 18, 1, p. 113-120 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding

    Savitski, M. M., Kjeldsen, F., Nielsen, Michael Lund, Garbuzynskiy, S. O., Galzitskaya, O. V., Surin, A. K. & Zubarev, R. A., 2007, In: Angewandte Chemie International Edition. 46, 9, p. 1481-1484 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations

    Savitski, M. M., Kjeldsen, F., Nielsen, Michael Lund & Zubarev, R. A., 2006, In: Angewandte Chemie International Edition. 45, 32, p. 5301-5303 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Side-chain losses in electron capture dissociation to improve peptide identification

    Savitski, M. M., Nielsen, Michael Lund & Zubarev, R. A., 2007, In: Analytical Chemistry. 79, 6, p. 2296-2302 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation

    Savitski, M. M., Kjeldsen, F., Nielsen, Michael Lund & Zubarev, R. A., 2007, In: Journal of Proteome Research. 6, 7, p. 2669-2673 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway

    Schubert, Lisa, Hendriks, Ivo Alexander, Hertz, Emil Peter Thrane, Wu, Wei, Sellés Baiget, Selene, Hoffmann, Saskia, Bagge, Keerthana Stine Viswalingam, Gallina, I., Pentakota, S., Benedict, Bente, Johansen, Joachim, Apelt, K., Luijsterburg, M. S., Rasmussen, Simon, Lisby, Michael, Liu, Ying, Nielsen, Michael Lund, Mailand, Niels & Duxin, Julien, 2022, In: EMBO Reports. 23, 4, 20 p., e53639.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 13143239