Søren Brunak

Søren Brunak

Professor

ORCID: 0000-0003-0316-5866

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  1. Published

    SignalP 6.0 predicts all five types of signal peptides using protein language models

    Teufel, Felix Georg, Almagro Armenteros, J. J., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, Konstantinos, Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 2022, In: Nature Biotechnology. 40, p. 1023-1025

    Research output: Contribution to journal › Comment/debate › Research

  2. Published

    SignalP 5.0 improves signal peptide predictions using deep neural networks

    Armenteros, J. J. A., Tsirigos, Konstantinos, Sønderby, C. K., Petersen, T. N., Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 18 Feb 2019, In: Nature Biotechnology. 37, 4, p. 420-423

    Research output: Contribution to journal › Journal article › Communication

  3. Published

    SignalP 4.0: discriminating signal peptides from transmembrane regions

    Petersen, T. N., Brunak, Søren, von Heijne, G. & Nielsen, H., 2011, In: Nature Methods. 8, 10, p. 785-6 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Sex differences in text-mined possible adverse drug events associated with drugs for psychosis

    Sørup, Freja Karuna Hemmingsen, Eriksson, R., Westergaard, David, Hallas, J., Brunak, Søren & Andersen, Stig Ejdrup, 2020, In: Journal of Psychopharmacology. 34, 5, p. 532-539 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Sex differences in oncogenic mutational processes

    Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., Boutros, P. C., PCAWG Tumour Subtypes and Clinical Translation, P. T. S. A. C. T. & Brunak, Søren, 2020, In: Nature Communications. 11, 1, 24 p., 4330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

    Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X. & 39 others, Sun, J., Cao, H., Ye, C., van Beusekom, J., Espeseth, T., Flindt, E., Friborg, R. M., Halager, A. E., Le Hellard, S., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Mailund, T., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, David, Yadav, R., Li, N., Xu, X., Hansen, Torben, Krogh, Anders, Bolund, L., Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Besenbacher, S., Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., 2017, In: Nature. 548, 7665, p. 87-91 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  7. Published

    Semen quality and waiting time to pregnancy explored using association mining

    Romero Herrera, J. A., Bang, A. K., Priskorn, L., Izarzugaza, J. M. G., Brunak, Søren & Jørgensen, N., 2021, In: Andrology. 9, 2, p. 577-587 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

    Terkelsen, T., Russo, F., Gromov, P., Haakensen, V. D., Brunak, Søren, Gromova, I., Krogh, Anders & Papaleo, E., 2020, In: Breast Cancer Research. 22, 1, 36 p., 73.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Seasonally adjusted laboratory reference intervals to improve the performance of machine learning models for classification of cardiovascular diseases

    Muse, V. P., Placido, Davide, Haue, Amalie Dahl & Brunak, Søren, 2024, In: BMC Medical Informatics and Decision Making. 24, 62.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

    Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B. S., Madsen, L. B., Høj, A., Vingborg, R., Zahn, B., Wang, X., Wang, X., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T. & 5 others, Nielsen, B., Havgaard, Jakob Hull, Brunak, Søren, Fredholm, Merete & Bendixen, C., 2007, In: Bioinformatics. 23, 13, p. i387-91 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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