Søren Brunak

Søren Brunak

Research director, professor


  1. 2019
  2. E-pub ahead of print

    SignalP 5.0 improves signal peptide predictions using deep neural networks. / Almagro Armenteros, José Juan; Tsirigos, Konstantinos D; Sønderby, Casper Kaae; Petersen, Thomas Nordahl; Winther, Ole; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Biotechnology, 18.02.2019.

    Research output: Contribution to journalJournal articleCommunication

  3. Published

    A large-cohort, longitudinal study determines pre-cancer disease routes across different cancer types. / Hu, Jessica X; Helleberg, Marie; Jensen, Anders B; Brunak, Søren; Lundgren, Jens.

    In: Cancer Research, Vol. 79, No. 4, 2019, p. 864-872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. E-pub ahead of print

    Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men. / Jiang, Li; Audouze, Karine; Romero Herrera, Jose Alejandro; Ängquist, Lars Henrik; Kjærulff, Sonny Kim; Izarzugaza, Jose M G; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Sørensen, Thorkild I A; Brunak, Søren.

    In: Clinical Nutrition, 14.02.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. E-pub ahead of print

    Large-scale study of Toxoplasma and Cytomegalovirus shows an association between infection and serious psychiatric disorders. / Sølvsten Burgdorf, Kristoffer; Trabjerg, Betina; Giørtz Pedersen, Marianne; Nissen, Janna; Banasik, Karina; Birger Pedersen, Ole; Sørensen, Erik; René Nielsen, Kaspar; Hørup Larsen, Margit; Erikstrup, Christian; Bruun-Rasmussen, Peter; Westergaard, David; Wegner Thørner, Lise; Hjalgrim, Henrik; Martina Paarup, Helene; Brunak, Søren; Pedersen, Carsten B; Fuller Torrey, E; Werge, Thomas; Bo Mortensen, Preben; Yolken, Robert; Ullum, Henrik.

    In: Brain, Behavior, and Immunity, 24.01.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Population-wide analysis of differences in disease progression patterns in men and women. / Westergaard, David; Moseley, Pope; Sørup, Freja Karuna Hemmingsen; Baldi, Pierre; Brunak, Søren.

    In: Nature Communications, Vol. 10, No. 1, 08.02.2019, p. 666.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. 2018
  8. Published

    Analysis of Time-Series Gene Expression Data to Explore Mechanisms of Chemical-Induced Hepatic Steatosis Toxicity. / Aguayo-Orozco, Alejandro; Bois, Frederic Yves; Brunak, Søren; Taboureau, Olivier.

    In: Frontiers in Genetics, Vol. 9, 396, 2018, p. 1-15.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A Novel Familial Cardiac Arrhythmia Syndrome with Widespread ST-Segment Depression. / Bundgård, Henning; Jøns, Christian; Lodder, Elisabeth M; Izarzugaza, Jose M.G.; Romero Herrera, Jose A; Pehrson, Steen; Tfelt-Hansen, Jacob; Ahlberg, Gustav; Olesen, Morten S; Holst, Anders G.; Wellens, Hein; de Villiers, Carin; Hastings, Robert; Stuart, Graham; Brunak, Søren; Wilde, Arthur A M; Watkins, Hugh; Christensen, Alex H.

    In: The New England Journal of Medicine, Vol. 379, No. 18, 2018, p. 1780-1781.

    Research output: Contribution to journalComment/debateResearch

  10. Published

    Familial co-occurrence of congenital heart defects follows distinct patterns. / Ellesøe, Sabrina G; Workman, Christopher T; Bouvagnet, Patrice; Loffredo, Christopher A; McBride, Kim L; Hinton, Robert B; van Engelen, Klaartje; Gertsen, Emma C; Mulder, Barbara J M; Postma, Alex V; Anderson, Robert H; Hjortdal, Vibeke E; Brunak, Søren; Larsen, Lars A.

    In: European Heart Journal, Vol. 39, No. 12, 03.2018, p. 1015–1022.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    A generic deep convolutional neural network framework for prediction of receptor–ligand interactions - NetPhosPan : application to kinase phosphorylation prediction. / Fenoy, Emilio; Izarzugaza, Jose M.G.; Jurtz, Vanessa; Brunak, Søren; Nielsen, Morten.

    In: Bioinformatics, 2018, p. 1-10.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Integrative network analysis highlights biological processes underlying GLP-1 stimulated insulin secretion : A DIRECT study. / Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Allebrandt, Karla Viviani; Brorsson, Caroline Anna; van Leeuwen, Nienke; Banasik, Karina; Mahajan, Anubha; Groves, Christopher J; van de Bunt, Martijn; Dawed, Adem Y; Fritsche, Andreas; Staiger, Harald; Simonis-Bik, Annemarie M C; Deelen, Joris; Kramer, Mark H H; Dietrich, Axel; Hübschle, Thomas; Willemsen, Gonneke; Häring, Hans-Ulrich; de Geus, Eco J C; Boomsma, Dorret I; Eekhoff, Elisabeth M W; Ferrer, Jorge; McCarthy, Mark I; Pearson, Ewan R; Gupta, Ramneek; Brunak, Søren; 't Hart, Leen M.

    In: P L o S One, Vol. 13, No. 1, e0189886, 2018, p. 1-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

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