Søren Brunak
Professor
Brunak Group
Blegdamsvej 3B
2200 København N
- Published
The small and large intestine contain related mesenchymal subsets that derive from embryonic Gli1+ precursors
Pærregaard, S. I., Wulff, L., Schussek, S., Niss, K., Mörbe, U., Jendholm, J., Wendland, K., Andrusaite, A. T., Brulois, K. F., Nibbs, R. J. B., Sitnik, K., Mowat, A. M. I., Butcher, E. C., Brunak, Søren & Agace, W. W., 2023, In: Nature Communications. 14, 1, 2307.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The sequences of 150,119 genomes in the UK Biobank
Halldorsson, B. V., Eggertsson, H. P., Moore, K. H. S., Hauswedell, H., Eiriksson, O., Ulfarsson, M. O., Palsson, G., Hardarson, M. T., Oddsson, A., Jensson, B. O., Kristmundsdottir, S., Sigurpalsdottir, B. D., Stefansson, O. A., Beyter, D., Holley, G., Tragante, V., Gylfason, A., Olason, P. I., Zink, F., Asgeirsdottir, M. & 27 others, , 2022, In: Nature. 607Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of physical activity in metabolic homeostasis before and after the onset of type 2 diabetes: an IMI DIRECT study
Koivula, R. W., Atabaki-Pasdar, N., Giordano, G. N., White, T., Adamski, J., Bell, J. D., Beulens, J., Brage, S., Brunak, S., De Masi, F., Dermitzakis, E. T., Forgie, I. M., Frost, G., Hansen, T., Hansen, T. H., Hattersley, A., Kokkola, T., Kurbasic, A., Laakso, M., Mari, A. & 15 others, , 2020, In: Diabetologia. 63, 4, p. 744-756 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The robot butler: How and why should we study predictive algorithms and artificial intelligence (AI) in healthcare?
Gjødsbøl, Iben Mundbjerg, Ringgaard, A. K., Holm, Peter Christoffer, Brunak, Søren & Bundgård, Henning, 2024, In: Digital Health. 10, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The protein kinase SIK downregulates the polarity protein Par3
Vanlandewijck, M., Dadras, M. S., Lomnytska, M., Mahzabin, T., Miller, M. L., Busch, C., Brunak, Søren, Heldin, C. & Moustakas, A., 2018, In: OncoTarget. 9, 5, p. 5716-5735 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The promise of digital healthcare technologies
Yeung, A. W. K., Torkamani, A., Butte, A. J., Glicksberg, B. S., Schuller, B., Rodriguez, B., Ting, D. S. W., Bates, D., Schaden, E., Peng, H., Willschke, H., van der Laak, J., Car, J., Rahimi, K., Celi, L. A., Banach, M., Kletecka-Pulker, M., Kimberger, O., Eils, R., Islam, S. M. S. & 5 others, , 2023, In: Frontiers in Public Health. 11, 12 p., 1196596.Research output: Contribution to journal › Review › Research › peer-review
The implications of alternative splicing in the ENCODE protein complement
Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A., Wesselink, J. J., Yeats, C., Olason, P. I., Albrecht, M., Hegyi, H., Giorgetti, A., Raimondo, D., Lagarde, J., Laskowski, R. A., López, G., Sadowski, M. I., Watson, J. D., Fariselli, P., Rossi, I., Nagy, A., Kai, W. & 26 others, , 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 13, p. 5495-500 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of the protein interactome on the syntenic structure of mammalian genomes
Kirk, I. K., Weinhold, N., Brunak, Søren & Belling, K., 2017, In: PLOS ONE. 12, 9, 14 p., e0179112.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of early pregnancy complications on completed family size—A nationwide, registry-based cohort study with 40 years of data
Kolte, A. M., Westergaard, David, Lidegaard, Øjvind, Brunak, Søren & Nielsen, Henriette Svarre, 2021, In: Acta Obstetricia et Gynecologica Scandinavica. 100, 12, p. 2226-2233Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The hunt for fatal myocardial infarction biomarkers: predictive circulating microRNAs
Russo, F., Rizzo, M., Belling, K., Brunak, Søren & Folkersen, L., Oct 2016, In: Journal of Translational Medicine. 4, Suppl 1, 4 p., S1.Research output: Contribution to journal › Editorial › Research
- Published
The governance structure for data access in the DIRECT consortium: an innovative medicines initiative (IMI) project
Teare, H. J. A., de Masi, F., Banasik, Karina, Barnett, A., Herrgard, S., Jablonka, B., Postma, J. W. M., McDonald, T. J., Forgie, I., Chmura, P. J., Rydzka, E. K., Gupta, R., Brunak, Søren, Pearson, E. & Kaye, J., 2018, In: Life Sciences, Society and Policy. 14, 1, p. 1-17 20.Research output: Contribution to journal › Journal article › Research › peer-review
The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density
Stranzl, T., Larsen, M. V., Lund, O., Nielsen, M. & Brunak, Søren, 2012, In: PloS one. 7, 9, p. e38670Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The burden of disease of three food-associated heavy metals in clusters in the Danish population - Towards targeted public health strategies
Herrera, J. A. R., Thomsen, S. T., Jakobsen, L. S., Fagt, S., Banasik, Karina, Izarzugaza, J. M. G., Brunak, Søren & Pires, S. M., 2021, In: Food and Chemical Toxicology. 150, 112072.Research output: Contribution to journal › Journal article › Research › peer-review
The atlas visualisation of genome-wide information
Skovgaard, M., Jensen, L. J., Friis, C., Stærfeldt, H. H., Worning, P., Brunak, Søren & Ussery, D. W., 2002, Methods in Microbiology. Vol. 33. p. 49-63Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The SH2 domain interaction landscape
Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Interplay of Non-coding RNAs and X Chromosome Inactivation in Human Disease
Russo, F., De Masi, F., Brunak, Søren & Belling, K. G., 2018, Systems Biology. Rajewsky, N., Jurga, S. & Barciszewski, J. (eds.). Springer, p. 229-238 (RNA Technologies).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The bio.tools registry of software tools and data resources for the life sciences
Ison, J., Ienasescu, H., Chmura, P., Rydza, E., Ménager, H., Kalaš, M., Schwämmle, V., Grüning, B., Beard, N., Lopez, R., Duvaud, S., Stockinger, H., Persson, B., Vařeková, R. S., Raček, T., Vondrášek, J., Peterson, H., Salumets, A., Jonassen, I., Hooft, R. & 16 others, , 2019, In: Genome Biology. 20, 1, 4 p., 164.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Text mining of electronic health records can validate a register-based diagnosis of epilepsy and subgroup into focal and generalized epilepsy
Vulpius, S. A., Werge, S., Jørgensen, Isabella Friis, Siggaard, T., Hernansanz Biel, J., Knudsen, Gitte Moos, Brunak, Søren & Pinborg, Lars Hageman, 2024, In: Epilepsia. 64, 10, p. 2750-2760 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal patterns of multi-morbidity in 570157 ischemic heart disease patients: a nationwide cohort study
Haue, Amalie Dahl, Armenteros, J. J. A., Holm, Peter Christoffer, Eriksson, R., Moseley, P. L., Køber, Lars Valeur, Bundgård, Henning & Brunak, Søren, 2022, In: Cardiovascular Diabetology. 21, 13 p., 87.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients
Jensen, A. B., Moseley, P. L., Oprea, T. I., Ellesøe, S. G., Eriksson, R., Schmock, H., Jensen, P. B., Jensen, Lars Juhl & Brunak, Søren, 24 Jun 2014, In: Nature Communications. 5, 10 p., 4022.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory
Moulder, R., Välikangas, T., Hirvonen, M. K., Suomi, T., Brorsson, C. A., Lietzén, N., Bruggraber, S. F. A., Overbergh, L., Dunger, D. B., Peakman, M., Chmura, Piotr Jaroslaw, Brunak, Søren, Schulte, A. M., Mathieu, C., Knip, M., Elo, L. L., Lahesmaa, R. & on behalf of the INNODIA consortium, O. B. O. T. I. C., 2023, In: Diabetologia. 66, p. 1983-1996Research output: Contribution to journal › Journal article › Research › peer-review
- Published
TEMPORAL ORDER OF DISEASE PAIRS AFFECTS SUBSEQUENT DISEASE TRAJECTORIES: THE CASE OF DIABETES AND SLEEP APNEA
Beck, M. K., Westergaard, David, Jensen, A. B., Groop, L. & Brunak, Søren, 2016, In: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 22, p. 380-389 10 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Systems genetics analysis identifies calcium-signaling defects as novel cause of congenital heart disease
Izarzugaza, J. M. G., Ellesøe, S. G., Doganli, Canan, Ehlers, Natasja Spring, Dalgaard, M. D., Audain, E., Dombrowsky, G., Banasik, Karina, Sifrim, A., Wilsdon, A., Thienpont, B., Breckpot, J., Gewillig, M., Brook, J. D., Hitz, M., Larsen, Lars Allan, Brunak, Søren & Competence Network for Congenital Heart Defects, Germany, C. N. F. C. H. D. G., 2020, In: Genome Medicine. 12, 1, 13 p., 76.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Survival prediction in intensive-care units based on aggregation of long-term disease history and acute physiology: a retrospective study of the Danish National Patient Registry and electronic patient records
Nielsen, A. B., Thorsen-Meyer, H. C., Belling, K., Nielsen, A. P., Thomas, Cecilia Engel, Chmura, Piotr Jaroslaw, Lademann, M., Moseley, P. L., Heimann, M., Dybdahl, L., Spangsege, L., Hulsen, P., Perner, Anders & Brunak, Søren, 2019, In: The Lancet Digital Health. 1, 2, p. e78-e89 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stratification of Kidney Transplant Recipients Into Five Subgroups Based on Temporal Disease Trajectories
Jørgensen, Isabella Friis, Muse, V. P., Aguayo-Orozco, A., Brunak, Søren & Sørensen, Søren Schwartz, 2024, In: Transplantation Direct. 10, 2, 11 p., e1576.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 12895347
Most downloads
-
2931
downloads
Identification of odorant-receptor interactions by global mapping of the human odorome
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
2867
downloads
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1245
downloads
A human gut microbial gene catalogue established by metagenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published