Søren Brunak

Søren Brunak

Professor

ORCID: 0000-0003-0316-5866

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  1. Published

    Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory

    Moulder, R., Välikangas, T., Hirvonen, M. K., Suomi, T., Brorsson, C. A., Lietzén, N., Bruggraber, S. F. A., Overbergh, L., Dunger, D. B., Peakman, M., Chmura, Piotr Jaroslaw, Brunak, Søren, Schulte, A. M., Mathieu, C., Knip, M., Elo, L. L., Lahesmaa, R. & on behalf of the INNODIA consortium, O. B. O. T. I. C., 2023, In: Diabetologia. 66, p. 1983-1996

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

    Jensen, A. B., Moseley, P. L., Oprea, T. I., Ellesøe, S. G., Eriksson, R., Schmock, H., Jensen, P. B., Jensen, Lars Juhl & Brunak, Søren, 24 Jun 2014, In: Nature Communications. 5, 10 p., 4022.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Temporal patterns of multi-morbidity in 570157 ischemic heart disease patients: a nationwide cohort study

    Haue, Amalie Dahl, Armenteros, J. J. A., Holm, Peter Christoffer, Eriksson, R., Moseley, P. L., Køber, Lars Valeur, Bundgård, Henning & Brunak, Søren, 2022, In: Cardiovascular Diabetology. 21, 13 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Text mining of electronic health records can validate a register-based diagnosis of epilepsy and subgroup into focal and generalized epilepsy

    Vulpius, S. A., Werge, S., Jørgensen, Isabella Friis, Siggaard, T., Hernansanz Biel, J., Knudsen, Gitte Moos, Brunak, Søren & Pinborg, Lars Hageman, 2024, In: Epilepsia. 64, 10, p. 2750-2760 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The bio.tools registry of software tools and data resources for the life sciences

    Ison, J., Ienasescu, H., Chmura, P., Rydza, E., Ménager, H., Kalaš, M., Schwämmle, V., Grüning, B., Beard, N., Lopez, R., Duvaud, S., Stockinger, H., Persson, B., Vařeková, R. S., Raček, T., Vondrášek, J., Peterson, H., Salumets, A., Jonassen, I., Hooft, R. & 16 others, Nyrönen, T., Valencia, A., Capella, S., Gelpí, J., Zambelli, F., Savakis, B., Leskošek, B., Rapacki, K., Blanchet, C., Jimenez, R., Oliveira, A., Vriend, G., Collin, O., van Helden, J., Løngreen, P. & Brunak, Søren, 2019, In: Genome Biology. 20, 1, 4 p., 164.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    The Interplay of Non-coding RNAs and X Chromosome Inactivation in Human Disease

    Russo, F., De Masi, F., Brunak, Søren & Belling, K. G., 2018, Systems Biology. Rajewsky, N., Jurga, S. & Barciszewski, J. (eds.). Springer, p. 229-238 (RNA Technologies).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    The SH2 domain interaction landscape

    Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. E-pub ahead of print

    The association of cardiometabolic, diet and lifestyle parameters with plasma glucagon-like peptide-1: An IMI DIRECT study

    Eriksen, R., White, M. C., Dawed, A. Y., Perez, I. G., Posma, J. M., Haid, M., Sharma, S., Prehn, C., Thomas, L. E., Koivula, R. W., Bizzotto, R., Mari, A., Giordano, G. N., Pavo, I., Schwenk, J. M., De Masi, F., Tsirigos, K. D., Brunak, S., Viñuela, A., Mahajan, A. & 26 others, McDonald, T. J., Kokkola, T., Rutters, F., Beulens, J., Muilwijk, M., Blom, M., Elders, P., Hansen, T. H., Fernandez-Tajes, J., Jones, A., Jennison, C., Walker, M., McCarthy, M. I., Pedersen, Oluf Borbye, Ruetten, H., Forgie, I., Holst, Jens Juul, Thomsen, Henrik S., Ridderstråle, M., Bell, J. D., Adamski, J., Franks, P. W., Hansen, Torben, Holmes, E., Frost, G. & Pearson, E. R., 2024, (E-pub ahead of print) In: Journal of Clinical Endocrinology and Metabolism.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. The atlas visualisation of genome-wide information

    Skovgaard, M., Jensen, L. J., Friis, C., Stærfeldt, H. H., Worning, P., Brunak, Søren & Ussery, D. W., 2002, Methods in Microbiology. Vol. 33. p. 49-63

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  10. Published

    The burden of disease of three food-associated heavy metals in clusters in the Danish population - Towards targeted public health strategies

    Herrera, J. A. R., Thomsen, S. T., Jakobsen, L. S., Fagt, S., Banasik, Karina, Izarzugaza, J. M. G., Brunak, Søren & Pires, S. M., 2021, In: Food and Chemical Toxicology. 150, 112072.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density

    Stranzl, T., Larsen, M. V., Lund, O., Nielsen, M. & Brunak, Søren, 2012, In: PloS one. 7, 9, p. e38670

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    The governance structure for data access in the DIRECT consortium: an innovative medicines initiative (IMI) project

    Teare, H. J. A., de Masi, F., Banasik, Karina, Barnett, A., Herrgard, S., Jablonka, B., Postma, J. W. M., McDonald, T. J., Forgie, I., Chmura, P. J., Rydzka, E. K., Gupta, R., Brunak, Søren, Pearson, E. & Kaye, J., 2018, In: Life Sciences, Society and Policy. 14, 1, p. 1-17 20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The hunt for fatal myocardial infarction biomarkers: predictive circulating microRNAs

    Russo, F., Rizzo, M., Belling, K., Brunak, Søren & Folkersen, L., Oct 2016, In: Journal of Translational Medicine. 4, Suppl 1, 4 p., S1.

    Research output: Contribution to journal › Editorial › Research

  14. Published

    The impact of early pregnancy complications on completed family size—A nationwide, registry-based cohort study with 40 years of data

    Kolte, A. M., Westergaard, D., Lidegaard, Øjvind, Brunak, Søren & Nielsen, Henriette Svarre, 2021, In: Acta Obstetricia et Gynecologica Scandinavica. 100, 12, p. 2226-2233

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The impact of the protein interactome on the syntenic structure of mammalian genomes

    Kirk, I. K., Weinhold, N., Brunak, Søren & Belling, K., 2017, In: PLOS ONE. 12, 9, 14 p., e0179112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. The implications of alternative splicing in the ENCODE protein complement

    Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A., Wesselink, J. J., Yeats, C., Olason, P. I., Albrecht, M., Hegyi, H., Giorgetti, A., Raimondo, D., Lagarde, J., Laskowski, R. A., López, G., Sadowski, M. I., Watson, J. D., Fariselli, P., Rossi, I., Nagy, A., Kai, W. & 26 others, Størling, Z., Orsini, M., Assenov, Y., Blankenburg, H., Huthmacher, C., Ramírez, F., Schlicker, A., Denoeud, F., Jones, P., Kerrien, S., Orchard, S., Antonarakis, S. E., Reymond, A., Birney, E., Brunak, Søren, Casadio, R., Guigo, R., Harrow, J., Hermjakob, H., Jones, D. T., Lengauer, T., Orengo, C. A., Patthy, L., Thornton, J. M., Tramontano, A. & Valencia, A., 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 13, p. 5495-500 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The promise of digital healthcare technologies

    Yeung, A. W. K., Torkamani, A., Butte, A. J., Glicksberg, B. S., Schuller, B., Rodriguez, B., Ting, D. S. W., Bates, D., Schaden, E., Peng, H., Willschke, H., van der Laak, J., Car, J., Rahimi, K., Celi, L. A., Banach, M., Kletecka-Pulker, M., Kimberger, O., Eils, R., Islam, S. M. S. & 5 others, Wong, S. T., Wong, T. Y., Gao, W., Brunak, Søren & Atanasov, A. G., 2023, In: Frontiers in Public Health. 11, 12 p., 1196596.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    The protein kinase SIK downregulates the polarity protein Par3

    Vanlandewijck, M., Dadras, M. S., Lomnytska, M., Mahzabin, T., Miller, M. L., Busch, C., Brunak, Søren, Heldin, C. & Moustakas, A., 2018, In: OncoTarget. 9, 5, p. 5716-5735 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The robot butler: How and why should we study predictive algorithms and artificial intelligence (AI) in healthcare?

    Gjødsbøl, Iben Mundbjerg, Ringgaard, A. K., Holm, Peter Christoffer, Brunak, Søren & Bundgård, Henning, 2024, In: Digital Health. 10, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The role of physical activity in metabolic homeostasis before and after the onset of type 2 diabetes: an IMI DIRECT study

    Koivula, R. W., Atabaki-Pasdar, N., Giordano, G. N., White, T., Adamski, J., Bell, J. D., Beulens, J., Brage, S., Brunak, S., De Masi, F., Dermitzakis, E. T., Forgie, I. M., Frost, G., Hansen, T., Hansen, T. H., Hattersley, A., Kokkola, T., Kurbasic, A., Laakso, M., Mari, A. & 15 others, McDonald, T. J., Pedersen, Oluf Borbye, Rutters, F., Schwenk, J. M., Teare, H. J. A., Thomas, E. L., Vinuela, A., Mahajan, A., McCarthy, M. I., Ruetten, H., Walker, M., Pearson, E., Pavo, I., Franks, P. W. & IMI-DIRECT consortium, I. C., 2020, In: Diabetologia. 63, 4, p. 744-756 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The sequences of 150,119 genomes in the UK Biobank

    Halldorsson, B. V., Eggertsson, H. P., Moore, K. H. S., Hauswedell, H., Eiriksson, O., Ulfarsson, M. O., Palsson, G., Hardarson, M. T., Oddsson, A., Jensson, B. O., Kristmundsdottir, S., Sigurpalsdottir, B. D., Stefansson, O. A., Beyter, D., Holley, G., Tragante, V., Gylfason, A., Olason, P. I., Zink, F., Asgeirsdottir, M. & 27 others, Sverrisson, S. T., Sigurdsson, B., Gudjonsson, S. A., Sigurdsson, G. T., Halldorsson, G. H., Sveinbjornsson, G., Norland, K., Styrkarsdottir, U., Magnusdottir, D. N., Snorradottir, S., Kristinsson, K., Sobech, E., Pedersen, Ole Birger Vesterager, Brunak, Søren, Ostrowski, Sisse Rye, Banasik, Karina, Burgdorf, Kristoffer Sølvsten, Didriksen, Maria, Hansen, Thomas Folkmann, Hjalgrim, Henrik, Jemec, Gregor, Jennum, Poul, Jo­hans­son, Pär In­ge­mar , Ostrowski, Sisse Rye, Ullum, H., Werge, Thomas & DBDS Genetic Consortium, D. G. C., 2022, In: Nature. 607

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The small and large intestine contain related mesenchymal subsets that derive from embryonic Gli1+ precursors

    Pærregaard, S. I., Wulff, L., Schussek, S., Niss, K., Mörbe, U., Jendholm, J., Wendland, K., Andrusaite, A. T., Brulois, K. F., Nibbs, R. J. B., Sitnik, K., Mowat, A. M. I., Butcher, E. C., Brunak, Søren & Agace, W. W., 2023, In: Nature Communications. 14, 1, 2307.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. The strength of intron donor splice sites in human genes displays a bell-shaped pattern

    Wang, K., Wernersson, R. & Brunak, Søren, 2011, In: Bioinformatics (Online). 27, 22, p. 3079-84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The temporal association of hyperhidrosis and its comorbidities – a nationwide hospital-based cohort study

    Henning, M. A. S., Reguant, R., Jørgensen, Isabella Friis, Andersen, Rune Kjærsgaard, Ibler, Kristina Sophie, Pedersen, Ole Birger Vesterager, Jemec, Gregor & Brunak, Søren, 2022, In: Journal of the European Academy of Dermatology and Venereology. 36, 12, p. 2504-2511

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The type 2 diabetes associated minor allele of rs2237895 KCNQ1 associates with reduced insulin release following an oral glucose load

    Holmkvist, J., Banasik, K., Andersen, G., Unoki, H., Jensen, T. S., Pisinger, C., Borch-Johnsen, K., Sandbaek, A., Lauritzen, T., Brunak, Søren, Maeda, S., Hansen, T. & Pedersen, Oluf Borbye, 2009, In: PLoS ONE. 4, 6, p. e5872

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 12895347