Nadezhda Tsankova Doncheva

Nadezhda Tsankova Doncheva

Assistant Professor

Member of:

    ORCID: 0000-0002-8806-6850

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    1. Published

      Visualize omics data on networks with Omics Visualizer, a Cytoscape App

      Legeay, M., Doncheva, Nadezhda Tsankova, Morris, J. H. & Jensen, Lars Juhl, 2020, In: F1000Research. 9, 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Viruses.STRING: A Virus-Host Protein-Protein Interaction Database

      Cook, H. V., Doncheva, Nadezhda Tsankova, Szklarczyk, D., von Mering, C. & Jensen, Lars Juhl, 2018, In: Viruses. 10, 10, p. 1-11 519.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis

      Yarani, R., Palasca, Oana, Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Litman, Thomas, Holmskov, U., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2019, In: Journal of Crohn's and Colitis. 13, p. S129-S130

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    4. Published

      The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression

      Corsi, G. I., Gadekar, V. P., Haukedal, H., Doncheva, Nadezhda Tsankova, Anthon, Christian, Ambardar, S., Palakodeti, D., Hyttel, P., Freude, Kristine, Seemann, Ernst Stefan & Gorodkin, Jan, 2023, In: Neurobiology of Disease. 178, 17 p., 105980.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production

      Geissler, Adrian Sven, Poulsen, L. D., Doncheva, Nadezhda Tsankova, Anthon, Christian, Seemann, Ernst Stefan, González-Tortuero, E., Breüner, A., Jensen, Lars Juhl, Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2022, In: Frontiers in Microbiology. 13, 17 p., 909493.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

      Szklarczyk, D., Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, F., Hachilif, R., Gable, A. L., Fang, T., Doncheva, Nadezhda Tsankova, Pyysalo, S., Bork, P., Jensen, Lars Juhl & von Mering, C., 2023, In: Nucleic Acids Research. 51, D1, p. D638-D646 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

      Szklarczyk, D., Gable, A. L., Nastou, Katerina, Lyon, D., Kirsch, Rebecca, Pyysalo, S., Doncheva, Nadezhda Tsankova, Legeay, M., Fang, T., Bork, P., Jensen, Lars Juhl & von Mering, C., 2021, In: Nucleic Acids Symposium Series. 49, D1, p. D605-D612 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

      Szklarczyk, D., Morris, J. H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos Delgado, A., Doncheva, Nadezhda Tsankova, Roth, A., Bork, P., Jensen, Lars Juhl & von Mering, C., Jan 2017, In: Nucleic Acids Research. 45, D1, p. D362-D368

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

      Szklarczyk, D., Gable, A. L., Lyon, D., Junge, A., Wyder, S., Huerta-Cepas, J., Simonovic, M., Doncheva, Nadezhda Tsankova, Morris, J. H., Bork, P., Jensen, Lars Juhl & von Mering, C., 2019, In: Nucleic Acids Research. 47, D1, p. D607-D613 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Proceedings of the EuBIC-MS 2020 Developers’ Meeting

      Ashwood, C., Bittremieux, W., Deutsch, E. W., Doncheva, N. T., Dorfer, V., Gabriels, R., Gorshkov, V., Gupta, S., Jones, A. R., Käll, L., Kopczynski, D., Lane, L., Lautenbacher, L., Legeay, M., Locard-Paulet, M., Mesuere, B., Perez-Riverol, Y., Netz, E., Pfeuffer, J., Sachsenberg, T. & 13 others, Salz, R., Samaras, P., Schiebenhoefer, H., Schmidt, T., Schwämmle, V., Soggiu, A., Uszkoreit, J., Van Den Bossche, T., Van Puyvelde, B., Van Strien, J., Verschaffelt, P., Webel, Henry & Willems, S., 2020, In: EuPA Open Proteomics. 24, p. 1-6 6 p.

      Research output: Contribution to journal › Editorial › Research

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    ID: 161289218