Lars Juhl Jensen
Professor, Group Leader, Professor
Jensen Group
Blegdamsvej 3, 2200 København N., 06 Bygning 6, Building: 06-2-26
Member of:
- 2006
Proteome survey reveals modularity of the yeast cell machinery
Gavin, A-C., Aloy, P., Grandi, P., Krause, R., Boesche, M., Marzioch, M., Rau, C., Jensen, L. J., Bastuck, S., Dümpelfeld, B., Edelmann, A., Heurtier, M-A., Hoffman, V., Hoefert, C., Klein, K., Hudak, M., Michon, A-M., Schelder, M., Schirle, M., Remor, M. & 12 others, , 2006, In: Nature Study. 440, 7084, p. 631-6 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Co-evolution of transcriptional and post-translational cell-cycle regulation
Jensen, Lars Juhl, Jensen, T. S., de Lichtenberg, U., Brunak, S. & Bork, P., 2006, In: Nature Study. 443, 7111, p. 594-7 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Literature mining for the biologist: from information retrieval to biological discovery
Jensen, Lars Juhl, Saric, J. & Bork, P., 2006, In: Nature Reviews. Genetics. 7, 2, p. 119-29 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast
Marguerat, S., Jensen, T. S., de Lichtenberg, U., Wilhelm, B. T., Jensen, Lars Juhl & Bähler, J., 2006, In: Yeast (Chichester, England). 23, 4, p. 261-77 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
Assessing systems properties of yeast mitochondria through an interaction map of the organelle
Perocchi, F., Jensen, Lars Juhl, Gagneur, J., Ahting, U., von Mering, C., Bork, P., Prokisch, H. & Steinmetz, L. M., 2006, In: P L o S Genetics (Online). 2, 10, p. e170Research output: Contribution to journal › Journal article › Research › peer-review
Extraction of regulatory gene/protein networks from Medline
Saric, J., Jensen, Lars Juhl, Ouzounova, R., Rojas, I. & Bork, P., 2006, In: Bioinformatics. 22, 6, p. 645-50 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Origin of replication in circular prokaryotic chromosomes
Worning, P., Jensen, Lars Juhl, Hallin, P. F., Staerfeldt, H. & Ussery, D., 2006, In: Environmental Microbiology. 8, 2, p. 353-61 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2005
Re-analysis of data and its integration
Jensen, Lars Juhl & Steinmetz, L. M., 2005, In: F E B S Letters. 579, 8, p. 1802-7 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Systematic association of genes to phenotypes by genome and literature mining
Korbel, J. O., Doerks, T., Jensen, Lars Juhl, Perez-Iratxeta, C., Kaczanowski, S., Hooper, S. D., Andrade, M. A. & Bork, P., 2005, In: P L o S Biology (Online). 3, 5, p. e134Research output: Contribution to journal › Journal article › Research › peer-review
Large-scale extraction of gene regulation for model organisms in an ontological context
Saric, J., Jensen, Lars Juhl & Rojas, I., 2005, In: In Silico Biology. 5, 1, p. 21-32 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Extraction of transcript diversity from scientific literature
Shah, P. K., Jensen, Lars Juhl, Boué, S. & Bork, P., 2005, In: P L o S Computational Biology. 1, 1, p. e10Research output: Contribution to journal › Journal article › Research › peer-review
Spore number control and breeding in saccharomyces cerevisiae a key role for a self-organixzing system
Taxis, C., Kavagiou, Z., Keller, P., Jensen, Lars Juhl, Colombelli, J., Bork, P., Stelzer, E. H. K. & Knop, M., 2005, In: Journal of Cell Biology. 171, p. 627-640Research output: Contribution to journal › Journal article › Research › peer-review
Crystal ball. Systems biology: in the broadest sense of the word
Ussery, D., de Lichtenberg, U. & Jensen, Lars Juhl, 2005, In: Environmental Microbiology. 7, 4, p. 482-3 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparison of computational methods for the identification of cell cycle-regulated genes
de Lichtenberg, U., Jensen, Lars Juhl, Fausbøll, A., Jensen, T. S., Bork, P. & Brunak, S., 2005, In: Bioinformatics. 21, 7, p. 1164-71 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Dynamic complex formation during the yeast cell cycle
de Lichtenberg, U., Jensen, Lars Juhl, Brunak, S. & Bork, P., 2005, In: Science (New York, N.Y.). 307, 5710, p. 724-7 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
STRING: known and predicted protein-protein associations, integrated and transferred across organisms
von Mering, C., Jensen, Lars Juhl, Snel, B., Hooper, S. D., Krupp, M., Foglierini, M., Jouffre, N., Huynen, M. A. & Bork, P., 2005, In: Nucleic Acids Research. 33, Database issue, p. D433-7Research output: Contribution to journal › Journal article › Research › peer-review
- 2004
Feature-based prediction of non-classical and leaderless protein secretion
Bendtsen, J. D., Jensen, Lars Juhl, Blom, N., Von Heijne, G. & Brunak, S., 2004, In: Protein Engineering Design and Selection (Print). 17, 4, p. 349-56 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Protein interaction networks from yeast to human
Bork, P., Jensen, Lars Juhl, von Mering, C., Ramani, A. K., Lee, I. & Marcotte, E. M., 2004, In: Current Opinion in Structural Biology. 14, 3, p. 292-9 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
ArrayProspector: a web resource of functional associations inferred from microarray expression data
Jensen, Lars Juhl, Lagarde, J., von Mering, C. & Bork, P., 2004, In: Nucleic Acids Research. 32, Web Server issue, p. W445-8Research output: Contribution to journal › Journal article › Research › peer-review
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs
Korbel, J. O., Jensen, Lars Juhl, von Mering, C. & Bork, P., 2004, In: Nature Biotechnology. 22, 7, p. 911-7 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2003
Prediction of human protein function according to Gene Ontology categories
Jensen, Lars Juhl, Gupta, R., Staerfeldt, H. & Brunak, S., 2003, In: Bioinformatics. 19, 5, p. 635-42 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
Jensen, Lars Juhl, Skovgaard, M., Sicheritz-Pontén, T., Jørgensen, M. K., Lundegaard, C., Pedersen, C. C., Petersen, N. & Ussery, D., 2003, In: B M C Genomics. 4, 1, p. 12Research output: Contribution to journal › Journal article › Research › peer-review
Functionality of system components: conservation of protein function in protein feature space
Jensen, Lars Juhl, Ussery, D. & Brunak, S., 2003, In: Genome Research. 13, 11, p. 2444-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Protein disorder prediction: implications for structural proteomics
Linding, R., Jensen, Lars Juhl, Diella, F., Bork, P., Gibson, T. J. & Russell, R. B., 2003, In: Structure. 11, 11, p. 1453-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Protein feature based identification of cell cycle regulated proteins in yeast
de Lichtenberg, U., Jensen, T. S., Jensen, Lars Juhl & Brunak, S., 2003, In: Journal of Molecular Biology. 329, 4, p. 663-74 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2002
Orphan protein function and its relation to glycosylation
Gupta, R., Jensen, Lars Juhl & Brunak, S., 2002, In: Ernst Schering Foundation Symposium Proceedings. 38, p. 276-94 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Prediction of human protein function from post-translational modifications and localization features
Jensen, Lars Juhl, Gupta, R., Blom, N., Devos, D., Tamames, J., Kesmir, C., Nielsen, H., Staerfeldt, H. H., Rapacki, K., Workman, C., Andersen, C. A. F., Knudsen, S., Krogh, A., Valencia, A. & Brunak, S., 2002, In: Journal of Molecular Biology. 319, 5, p. 1257-65 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Prediction of novel archaeal enzymes from sequence-derived features
Jensen, Lars Juhl, Skovgaard, M. & Brunak, S., 2002, In: Protein Science. 11, 12, p. 2894-8 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
The atlas visualisation of genome-wide information
Skovgaard, M., Jensen, Lars Juhl, Friis, C., Stærfeldt, H. H., Worning, P., Brunak, S. & Ussery, D. W., 2002, Methods in Microbiology. Vol. 33. p. 49-63Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
A new non-linear normalization method for reducing variability in DNA microarray experiments
Workman, C., Jensen, Lars Juhl, Jarmer, H. Ø., Berka, R., Gautier, L., Nielser, H. B., Saxild, H. H., Nielsen, C., Brunak, S. & Knudsen, S., 2002, In: Genome Biology (Online Edition). 3, 9, p. research0048Research output: Contribution to journal › Journal article › Research › peer-review
- 2001
- Published
On the total number of genes and their length distribution in complete microbial genomes
Skovgaard, M., Jensen, Lars Juhl, Brunak, Søren, Ussery, D. & Krogh, Anders, 2001, In: Trends in Genetics. 17, 8, p. 425-8 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2000
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
Jensen, Lars Juhl & Knudsen, S., 2000, In: Bioinformatics. 16, 4, p. 326-33 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Visualization of pathogenicity regions in bacteria
Jensen, Lars Juhl, Friis, C. & Ussery, D., 2000, In: Genetica. 108, 1, p. 47-51 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
A DNA structural atlas for Escherichia coli
Pedersen, A. G., Jensen, Lars Juhl, Brunak, S., Staerfeldt, H. H. & Ussery, D., 2000, In: Journal of Molecular Biology. 299, 4, p. 907-30 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima
Worning, P., Jensen, Lars Juhl, Nelson, K. E., Brunak, S. & Ussery, D., 2000, In: Nucleic Acids Research. 28, 3, p. 706-9 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 1998
Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides
Jensen, Lars Juhl, Andersen, K. V., Svendsen, A. & Kretzschmar, T., 1998, In: Nucleic Acids Research. 26, 3, p. 697-702 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 9931112
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TISSUES 2.0: an integrative web resource on mammalian tissue expression
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STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
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Drug target ontology to classify and integrate drug discovery data
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