Matthias Mann

Matthias Mann

Professor, head of research, Professor

Member of:

    ORCID: 0000-0003-1292-4799

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    1. β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments

      Schiller, H. B., Hermann, M., Polleux, J., Vignaud, T., Zanivan, S., Friedel, C. C., Sun, Z., Raducanu, A., Gottschalk, K., Théry, M., Mann, Matthias & Fässler, R., Jun 2013, In: Nature Cell Biology. 15, 6, p. 625-36 12 p.

      Research output: Contribution to journal › Journal article › Research

    2. p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1

      Ma-Lauer, Y., Carbajo-Lozoya, J., Hein, M. Y., Müller, M. A., Deng, W., Lei, J., Meyer, B., Kusov, Y., von Brunn, B., Bairad, D. R., Hünten, S., Drosten, C., Hermeking, H., Leonhardt, H., Mann, Matthias, Hilgenfeld, R. & von Brunn, A., 30 Aug 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. E5192-201

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

      Meier, F., Brunner, A., Frank, M., Ha, A., Bludau, I., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Bache, N., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2020, In: Nature Methods. 17, 12, p. 1229-1236

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Yeast expression proteomics by high-resolution mass spectrometry

      Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In: Methods in Enzymology. 470, p. 259-80 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. YBX1 mediates translation of oncogenic transcripts to control cell competition in AML

      Perner, F., Schnoeder, T. M., Xiong, Y., Jayavelu, A. K., Mashamba, N., Santamaria, N. T., Huber, N., Todorova, K., Hatton, C., Perner, B., Eifert, T., Murphy, C., Hartmann, M., Hoell, J. I., Schröder, N., Brandt, S., Hochhaus, A., Mertens, P. R., Mann, M., Armstrong, S. A. & 2 others, Mandinova, A. & Heidel, F. H., Feb 2022, In: Leukemia. 36, 2, p. 426-437 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Widespread Proteome Remodeling and Aggregation in Aging C. elegans

      Walther, D. M., Kasturi, P., Zheng, M., Pinkert, S., Vecchi, G., Ciryam, P., Morimoto, R. I., Dobson, C. M., Vendruscolo, M., Mann, Matthias & Hartl, F. U., 23 Feb 2017, In: Cell. 168, 5, p. 944

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

      Windeløv, Johanne Agerlin, Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Jepsen, Sara Lind, Hornburg, D., Pedersen, Jens, Jensen, E. P., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Ørgaard, A., Deacon, Carolyn F., Mann, Matthias, Kissow, Hannelouise, Hartmann, Bolette & Holst, Jens Juul, Oct 2017, In: Diabetologia. 60, 10, p. 2066-2075 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Urinary proteome profiling for stratifying patients with familial Parkinson’s disease

      Virreira Winter, S., Karayel, O., Strauss, M. T., Padmanabhan, S., Surface, M., Merchant, K., Alcalay, R. N. & Mann, Matthias, 2021, In: EMBO Molecular Medicine. 13, 3, 19 p., e13257.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Unique ligand and kinase-independent roles of the insulin receptor in regulation of cell cycle, senescence and apoptosis

      Nagao, H., Jayavelu, A. K., Cai, W., Pan, H., Dreyfuss, J. M., Batista, T. M., Brandão, B. B., Mann, Matthias & Kahn, C. R., 4 Jan 2023, In: Nature Communications. 14, 1, p. 57

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Unbiased spatial proteomics with single-cell resolution in tissues

      Mund, Andreas, Brunner, A. & Mann, Matthias, 2022, In: Molecular Cell. 82, 12, p. 2335-2349 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    11. Published

      Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation

      Brunner, A., Thielert, Marvin Christoffer, Vasilopoulou, C., Ammar, C., Coscia, F., Mund, Andreas, Hoerning, O. B., Bache, N., Apalategui, A., Lubeck, M., Richter, S., Fischer, D. S., Raether, O., Park, M. A., Meier, F., Theis, F. J. & Mann, Matthias, 2022, In: Molecular Systems Biology. 18, 3, 15 p., e10798.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

      Grassl, N., Kulak, N. A., Pichler, G., Geyer, P. E., Jung, J., Schubert, S., Sinitcyn, P., Cox, J. & Mann, Matthias, 21 Apr 2016, In: Genome Medicine. 8, 13 p., 44.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. UBL3 modification influences protein sorting to small extracellular vesicles

      Ageta, H., Ageta-Ishihara, N., Hitachi, K., Karayel, O., Onouchi, T., Yamaguchi, H., Kahyo, T., Hatanaka, K., Ikegami, K., Yoshioka, Y., Nakamura, K., Kosaka, N., Nakatani, M., Uezumi, A., Ide, T., Tsutsumi, Y., Sugimura, H., Kinoshita, M., Ochiya, T., Mann, M. & 2 others, Setou, M. & Tsuchida, K., 26 Sep 2018, In: Nature Communications. 9, 1, p. 3936

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4

      Hinsby, A. M., Olsen, Jesper Velgaard & Mann, Matthias, 2004, In: Journal of Biological Chemistry. 279, 45, p. 46438-47 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Trypsin cleaves exclusively C-terminal to arginine and lysine residues

      Olsen, Jesper Velgaard, Ong, S. & Mann, Matthias, 2004, In: Molecular and Cellular Proteomics. 3, 6, p. 608-14 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

      Vasilopoulou, C. G., Sulek, K., Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 2020, In: Nature Communications. 11, 1, 11 p., 331.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation - Serial Fragmentation (PASEF) in Proteomics

      Meier, F., Park, M. A. & Mann, Matthias, 17 Aug 2021, (E-pub ahead of print) In: Molecular and Cellular Proteomics. p. 100138

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Transcription Factor MAFF (MAF Basic Leucine Zipper Transcription Factor F) Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism

      von Scheidt, M., Zhao, Y., de Aguiar Vallim, T. Q., Che, N., Wierer, M., Seldin, M. M., Franzén, O., Kurt, Z., Pang, S., Bongiovanni, D., Yamamoto, M., Edwards, P. A., Ruusalepp, A., Kovacic, J. C., Mann, Matthias, Björkegren, J. L. M., Lusis, A. J., Yang, X. & Schunkert, H., 2021, In: Circulation. 143, 18, p. 1809-1823

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Towards Precision Dermatology: Emerging Role of Proteomic Analysis of the Skin

      Fredman, G., Skov, Lone, Mann, Matthias & Dyring-Andersen, Beatrice, 2022, In: Dermatology. 238, p. 185–194

      Research output: Contribution to journal › Review › Research › peer-review

    20. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

      Macek, B., Waanders, L. F., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Molecular and Cellular Proteomics. 5, 5, p. 949-58 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila

      Tain, L. S., Sehlke, R., Meilenbrock, R. L., Leech, T., Paulitz, J., Chokkalingam, M., Nagaraj, N., Grönke, S., Fröhlich, J., Atanassov, I., Mann, Matthias, Beyer, A. & Partridge, L., 21 Apr 2021, In: eLife. 10

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β

      J D'Souza, R. C., Knittle, A. M., Nagaraj, N., van Dinther, M., Choudhary, Chunaram, Ten Dijke, P., Mann, Matthias & Sharma, K., Jul 2014, In: Science Signaling. 7, 335, p. rs5 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway

      Takahashi, M., Lio, C. J., Campeau, A., Steger, M., Ay, F., Mann, Matthias, Gonzalez, D. J., Jain, M. & Sharma, S., Apr 2021, In: Nature Immunology. 22, 4, p. 485-496 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      The structural context of posttranslational modifications at a proteome-wide scale

      Bludau, I., Willems, S., Zeng, W. F., Strauss, Maximilian, Hansen, F. M., Tanzer, M. C., Karayel, O., Schulman, B. A. & Mann, Matthias, 2022, In: PLOS Biology. 20, 5, 23 p., e3001636.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      The social and structural architecture of the yeast protein interactome

      Michaelis, A. C., Brunner, A., Zwiebel, M., Meier, F., Strauss, Maximilian, Bludau, I. & Mann, Matthias, 2023, In: Nature. 624, 7990, p. 192-200 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

      Macek, B., Mijakovic, I., Olsen, Jesper Velgaard, Gnad, F., Kumar, C., Jensen, P. R. & Mann, Matthias, Feb 2008, In: Molecular and Cellular Proteomics. 6, 4, p. 697-707 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell

      Mann, K. & Mann, Matthias, 2013, In: Proteome Science. 11, 1, p. 40

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications

      Iglesias Gato, Diego, Thysell, E., Tyanova, S., Crnalic, S., Santos, A., Lima, T. S., Geiger, T., Cox, J., Widmark, A., Bergh, A., Mann, Matthias, Flores-Morales, A. & Wikström, P., 1 Nov 2018, In: Clinical Cancer Research. 24, 21, p. 5433-5444 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      The proteome landscape of the kingdoms of life

      Müller, J. B., Geyer, P. E., Colaço, A. R., Treit, P. V., Strauss, M. T., Oroshi, M., Doll, S., Virreira Winter, S., Bader, J. M., Köhler, N., Theis, F., Santos, A. & Mann, Matthias, 2020, In: Nature. 582, p. 592-596

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization

      Korge, S., Maier, B., Brüning, F., Ehrhardt, L., Korte, T., Mann, Matthias, Herrmann, A., Robles, M. S. & Kramer, A., Jan 2018, In: P L o S Genetics. 14, 1, p. e1007189

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. The low molecular weight proteome of Halobacterium salinarum

      Klein, C., Aivaliotis, M., Olsen, Jesper Velgaard, Falb, M., Besir, H., Scheffer, B., Bisle, B., Tebbe, A., Konstantinidis, K., Siedler, F., Pfeiffer, F., Mann, Matthias & Oesterhelt, D., 2007, In: Journal of Proteome Research. 6, 4, p. 1510-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

      Adachi, J., Kumar, C., Zhang, Y., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Genome Biology. 7, 9, p. R80

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. The hemicellulose-degrading enzyme system of the thermophilic bacterium Clostridium stercorarium: comparative characterisation and addition of new hemicellulolytic glycoside hydrolases

      Broeker, J., Mechelke, M., Baudrexl, M., Mennerich, D., Hornburg, D., Mann, Matthias, Schwarz, W. H., Liebl, W. & Zverlov, V. V., 2018, In: Biotechnology for Biofuels. 11, p. 229

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      The growing landscape of lysine acetylation links metabolism and cell signalling

      Choudhary, Chunaram, Weinert, B. T., Nishida, Y., Verdin, E. & Mann, Matthias, 23 Jul 2014, In: Nature Reviews. Molecular Cell Biology. 15, 8, p. 536-50 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    35. Published

      The forebrain synaptic transcriptome is organized by clocks but its proteome is driven by sleep

      Noya, S. B., Colameo, D., Brüning, F., Spinnler, A., Mircsof, D., Opitz, L., Mann, Matthias, Tyagarajan, S. K., Robles, M. S. & Brown, S. A., 2019, In: Science. 366, 6462, eaav2642 .

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      The ever expanding scope of electrospray mass spectrometry-a 30 year journey

      Mann, Matthias, 2019, In: Nature Communications. 10, 3744.

      Research output: Contribution to journal › Comment/debate › Research

    37. Published

      The emerging role of mass spectrometry-based proteomics in drug discovery

      Meissner, F., Geddes-McAlister, J., Mann, Matthias & Bantscheff, M., 2022, In: Nature Reviews Drug Discovery. 21, p. 637-654 18 p.

      Research output: Contribution to journal › Review › Research › peer-review

    38. The chromodomain helicase Chd4 is required for Polycomb-mediated inhibition of astroglial differentiation

      Sparmann, A., Xie, Y., Verhoeven, E., Vermeulen, M., Lancini, C., Gargiulo, G., Hulsman, D., Mann, Matthias, Knoblich, J. A. & van Lohuizen, M., 29 May 2013, In: E M B O Journal. 32, 11, p. 1598-612 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia

      Rommel, C., Rösner, S., Lother, A., Barg, M., Schwaderer, M., Gilsbach, R., Bömicke, T., Schnick, T., Mayer, S., Doll, S., Hesse, M., Kretz, O., Stiller, B., Neumann, F., Mann, Matthias, Krane, M., Fleischmann, B. K., Ravens, U. & Hein, L., 2018, In: Circulation Research. 123, 5, p. 550-563 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      The SH2 domain interaction landscape

      Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In: Cell Reports. 3, 4, p. 1293-1305 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      The Proteome of Primary Prostate Cancer

      Iglesias Gato, Diego, Wikström, P., Tyanova, S., Lavallee, C., Thysell, E., Carlsson, J., Hägglöf, C., Cox, J., Andrén, O., Stattin, P., Egevad, L., Widmark, A., Bjartell, A., Collins, C. C., Bergh, A., Geiger, T., Mann, Matthias & Flores-Morales, A., May 2016, In: European Urology. 69, 5, p. 942-952 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      The Proteome of Hand Eczema Assessed by Tape Stripping

      Sølberg, J. B. K., Quaade, A. S., Drici, L., Sulek, K., Ulrich, N. H., Løvendorf, Marianne Bengtson, Thyssen, Jacob Pontoppidan, Mann, Matthias, Dyring-Andersen, Beatrice & Johansen, Jeanne Duus, 2023, In: Journal of Investigative Dermatology. 143, p. 1559-1568

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. The Perseus computational platform for comprehensive analysis of (prote)omics data

      Tyanova, S., Temu, T., Sinitcyn, P., Carlson, A., Hein, M. Y., Geiger, T., Mann, Matthias & Cox, J., Sep 2016, In: Nature Methods. 13, 9, p. 731-40 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      The Origins of Organellar Mapping by Protein Correlation Profiling

      Mann, Matthias, 2020, In: Proteomics. 20, 23, 4 p., e1900330.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      The NSP3 protein of SARS-CoV-2 binds fragile X mental retardation proteins to disrupt UBAP2L interactions

      Garvanska, D. H., Alvarado, R. E., Mundt, F. O., Lindqvist, R., Duel, J. K., Coscia, F., Nilsson, E., Lokugamage, K., Johnson, B. A., Plante, J. A., Morris, D. R., Vu, M. N., Estes, L. K., McLeland, A. M., Walker, J., Crocquet-Valdes, P. A., Mendez, B. L., Plante, K. S., Walker, D. H., Weisser, M. B. & 4 others, Överby, A. K., Mann, Matthias, Menachery, V. D. & Nilsson, Jakob, 2024, In: EMBO Reports.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression

      Kaya-Çopur, A., Marchiano, F., Hein, M. Y., Alpern, D., Russeil, J., Luis, N. M., Mann, Matthias, Deplancke, B., Habermann, B. H. & Schnorrer, F., 6 Jan 2021, In: eLife. 10

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      The Coming Age of Complete, Accurate, and Ubiquitous Proteomes

      Mann, Matthias, Kulak, N. A., Nagaraj, N. & Cox, J., 21 Feb 2013, In: Molecular Cell. 49, 4, p. 583-590 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      The Case for Proteomics and Phospho-Proteomics in Personalized Cancer Medicine

      Doll, S., Gnad, F. & Mann, Matthias, 2019, In: Proteomics - Clinical Applications. 13, 2, 10 p., e1800113.

      Research output: Contribution to journal › Review › Research › peer-review

    49. Published

      The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair

      Sparks, J. L., Chistol, G., Gao, A. O., Räschle, M., Larsen, N. B., Mann, Matthias, Duxin, Julien & Walter, J. C., 2019, In: Cell. 176, 1-2, p. 167-181.e21

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. The Atherosclerosis Risk Variant rs2107595 Mediates Allele-Specific Transcriptional Regulation of HDAC9 via E2F3 and Rb1

      Prestel, M., Prell-Schicker, C., Webb, T., Malik, R., Lindner, B., Ziesch, N., Rex-Haffner, M., Röh, S., Viturawong, T., Lehm, M., Mokry, M., den Ruijter, H., Haitjema, S., Asare, Y., Söllner, F., Najafabadi, M. G., Aherrahrou, R., Civelek, M., Samani, N. J., Mann, M. & 2 others, Haffner, C. & Dichgans, M., Oct 2019, In: Stroke. 50, 10, p. 2651-2660 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells

      Mehta, S., Buyanbat, A., Kai, Y., Karayel, O., Goldman, S. R., Seruggia, D., Zhang, K., Fujiwara, Y., Donovan, K. A., Zhu, Q., Yang, H., Nabet, B., Gray, N. S., Mann, Matthias, Fischer, E. S., Adelman, K. & Orkin, S. H., 18 Aug 2022, In: Cell Chemical Biology. 29, 8, p. 1273-1287.e8

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Published

      TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress

      Hoffmann, Saskia, Smedegaard, S., Nakamura, K., Mortuza, G. B., Räschle, M., Ibañez de Opakua, A., Oka, Y., Feng, Y., Blanco, F. J., Mann, Matthias, Montoya, Guillermo, Groth, Anja, Bekker-Jensen, Simon Holst & Mailand, Niels, 4 Jan 2016, In: The Journal of Cell Biology. 212, 1, p. 63-75

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells

      Ding, L., Paszkowski-Rogacz, M., Winzi, M., Chakraborty, D., Theis, M., Singh, S., Ciotta, G., Poser, I., Roguev, A., Chu, W. K., Choudhary, Chunaram, Mann, Matthias, Stewart, A. F., Krogan, N. & Buchholz, F., 26 Aug 2015, In: Cell Systems. 1, 2, p. 141-151 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis

      Steger, M., Diez, F., Dhekne, H. S., Lis, P., Nirujogi, R. S., Karayel, O., Tonelli, F., Martinez, T. N., Lorentzen, E., Pfeffer, S. R., Alessi, D. R. & Mann, Matthias, 10 Nov 2017, In: eLife. 6

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. Published

      System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

      Rigbolt, K. T. G., Prokhorova, T., Akimov, V., Løkkegaard, Jeanette, Johansen, P. T., Kratchmarova, I., Kassem, M. S. E., Mann, Matthias, Olsen, Jesper Velgaard & Blagoev, B., 2011, In: Science Signaling. 4, 164, p. rs3

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. Published

      Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition

      Skowronek, P., Krohs, F., Lubeck, M., Wallmann, G., Itang, E. C. M., Koval, P., Wahle, M., Thielert, Marvin Christoffer, Meier, F., Willems, S., Raether, O. & Mann, Matthias, 2023, In: Molecular and Cellular Proteomics. 22, 2, 14 p., 100489.

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      Status of large-scale analysis of post-translational modifications by mass spectrometry

      Olsen, Jesper Velgaard & Mann, Matthias, 1 Nov 2013, In: Molecular & Cellular Proteomics. 12, p. 3444-52

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

      de Godoy, L. M. F., Olsen, Jesper Velgaard, de Souza, G. A., Li, G., Mortensen, P. & Mann, Matthias, 2006, In: Genome Biology. 7, 6, p. R50

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response

      Radovanac, K., Morgner, J., Schulz, J., Blumbach, K., Patterson, C., Geiger, T., Mann, Matthias, Krieg, T., Eckes, B., Fässler, R. & Wickström, S. A., 15 May 2013, In: E M B O Journal. 32, 10, p. 1409-24 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Published

      Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry

      Jungmichel, S., Sylvestersen, K. B., Choudhary, Chunaram, Nguyen, S., Mann, Matthias & Nielsen, Michael Lund, 13 Feb 2014, In: Cell Reports. 6, 3, p. 578-91 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function

      Hosp, F., Gutiérrez-Ángel, S., Schaefer, M. H., Cox, J., Meissner, F., Hipp, M. S., Hartl, F., Klein, R., Dudanova, I. & Mann, Matthias, 21 Nov 2017, In: Cell Reports. 21, 8, p. 2291-2303 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. Published

      Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin

      Dyring-Andersen, Beatrice, Løvendorf, M. B., Coscia, F., Santos, A., Møller, L. B. P., Colaço, A. R., Niu, Lili, Bzorek, M., Doll, S., Andersen, J. L., Clark, R. A., Skov, Lone, Teunissen, M. B. M. & Mann, Matthias, 2020, In: Nature Communications. 11, 1, 5587.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. Published

      Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome

      Rosenberger, F. A., Thielert, Marvin Christoffer, Strauss, Maximilian, Schweizer, L., Ammar, C., Mädler, S. C., Metousis, A., Skowronek, P., Wahle, M., Madden, K., Gote-Schniering, J., Semenova, A., Schiller, H. B., Rodriguez, E., Nordmann, T. M., Mund, Andreas & Mann, Matthias, 2023, In: Nature Methods. 20, 10, p. 1530-1536 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Published

      Spatial proteomics in three-dimensional intact specimens

      Bhatia, H. S., Brunner, A-D., Öztürk, F., Kapoor, S., Rong, Z., Mai, H., Thielert, M., Ali, M., Al-Maskari, R., Paetzold, J. C., Kofler, F., Todorov, M. I., Molbay, M., Kolabas, Z. I., Negwer, M., Hoeher, L., Steinke, H., Dima, A., Gupta, B., Kaltenecker, D. & 11 others, Caliskan, Ö. S., Brandt, D., Krahmer, N., Müller, S., Lichtenthaler, S. F., Hellal, F., Bechmann, I., Menze, B., Theis, F., Mann, Matthias & Ertürk, A., 2022, In: Cell. 185, 26, p. 5040-5058.e19

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. Published

      Spatial characterization of single tumor cells by proteomics

      Mund, Andreas & Mann, Matthias, 2022, In: Nature Biotechnology. 40, 8, p. 1186-1187 2 p.

      Research output: Contribution to journal › Comment/debate › Research

    66. Soluble Oligomers of PolyQ-Expanded Huntingtin Target a Multiplicity of Key Cellular Factors

      Kim, Y. E., Hosp, F., Frottin, F., Ge, H., Mann, Matthias, Hayer-Hartl, M. & Hartl, F. U., 15 Sep 2016, In: Molecular Cell. 63, 6, p. 951-64 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Social network architecture of human immune cells unveiled by quantitative proteomics

      Rieckmann, J. C., Geiger, R., Hornburg, D., Wolf, T., Kveler, K., Jarrossay, D., Sallusto, F., Shen-Orr, S. S., Lanzavecchia, A., Mann, Matthias & Meissner, F., May 2017, In: Nature Immunology. 18, 5, p. 583-593 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      Sleep-wake cycles drive daily dynamics of synaptic phosphorylation

      Brüning, F., Noya, S. B., Bange, T., Koutsouli, S., Rudolph, J. D., Tyagarajan, S. K., Cox, J., Mann, Matthias, Brown, S. A. & Robles, M. S., 2019, In: Science (New York, N.Y.). 366, 6462, eaav3617 .

      Research output: Contribution to journal › Journal article › Research › peer-review

    69. Published

      Single muscle fiber proteomics reveals unexpected mitochondrial specialization

      Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In: E M B O Reports. 16, 3, p. 387-95 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    70. Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging

      Murgia, M., Toniolo, L., Nagaraj, N., Ciciliot, S., Vindigni, V., Schiaffino, S., Reggiani, C. & Mann, Matthias, 13 Jun 2017, In: Cell Reports. 19, 11, p. 2396-2409 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry

      Hinsby, A. M., Olsen, Jesper Velgaard, Bennett, K. L. & Mann, Matthias, 2003, In: Molecular and Cellular Proteomics. 2, 1, p. 29-36 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. Signaling defects associated with insulin resistance in nondiabetic and diabetic individuals and modification by sex

      Haider, N., Lebastchi, J., Jayavelu, A. K., Batista, T. M., Pan, H., Dreyfuss, J. M., Carcamo-Orive, I., Knowles, J. W., Mann, Matthias & Kahn, C. R., 1 Nov 2021, In: The Journal of Clinical Investigation. 131, 21

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. Published

      Sequencing of the First Draft of the Human Acetylome

      Choudhary, Chunaram & Mann, Matthias, 2020, In: Clinical Chemistry. 66, 6, p. 852-853 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

      Deshmukh, Atul Shahaji, Cox, J., Jensen, Lars Juhl, Meissner, F. & Mann, Matthias, 6 Nov 2015, In: Journal of Proteome Research. 14, 11, p. 4885-95 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer

      Oberhuber, M., Pecoraro, M., Rusz, M., Oberhuber, G., Wieselberg, M., Haslinger, P., Gurnhofer, E., Schlederer, M., Limberger, T., Lagger, S., Pencik, J., Kodajova, P., Högler, S., Stockmaier, G., Grund-Gröschke, S., Aberger, F., Bolis, M., Theurillat, J-P., Wiebringhaus, R., Weiss, T. & 13 others, Haitel, A., Brehme, M., Wadsak, W., Griss, J., Mohr, T., Hofer, A., Jäger, A., Pollheimer, J., Egger, G., Koellensperger, G., Mann, Matthias, Hantusch, B. & Kenner, L., Apr 2020, In: Molecular Systems Biology. 16, 4, p. e9247

      Research output: Contribution to journal › Journal article › Research › peer-review

    76. Published

      SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells

      Itzhak, D. N., Sacco, F., Nagaraj, N., Tyanova, S., Mann, Matthias & Murgia, M., 2019, In: Disease Models & Mechanisms. 12, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers

      Zanivan, S., Maione, F., Hein, M. Y., Hernández-Fernaud, J. R., Ostasiewicz, P., Giraudo, E. & Mann, Matthias, 26 Aug 2013, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. SHP1 regulates a STAT6-ITGB3 axis in FLT3ITD-positive AML cells

      Reich, D., Kresinsky, A., Müller, J. P., Bauer, R., Kallenbach, J., Schnoeder, T. M., Heidel, F. H., Fässler, R., Mann, Matthias, Böhmer, F. & Jayavelu, A. K., 2020, In: Leukemia. 34, p. 1444-1449

      Research output: Contribution to journal › Letter › Research › peer-review

    79. Published

      SCAI promotes DNA double-strand break repair in distinct chromosomal contexts

      Hansen, R. K., Mund, A., Poulsen, S. L., Sandoval, M., Klement, K., Tsouroula, K., Tollenaere, M. A. X., Räschle, M., Soria, R., Offermanns, S., Worzfeld, T., Grosse, R., Brandt, D. T., Rozell, B., Mann, M., Cole, F., Soutoglou, E., Goodarzi, A. A., Daniel, J. A., Mailand, N. & 1 others, Bekker-Jensen, Simon Holst, 7 Nov 2016, In: Nature Cell Biology. 18, 12, p. 1357–1366

      Research output: Contribution to journal › Letter › Research › peer-review

    80. Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation

      Trentini, D. B., Pecoraro, M., Tiwary, S., Cox, J., Mann, Matthias, Hipp, M. S. & Hartl, F. U., 25 Feb 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4099-4108 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    81. Published

      Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel

      Thielert, M., Itang, E. C. M., Ammar, C., Rosenberger, F. A., Bludau, I., Schweizer, L., Nordmann, T. M., Skowronek, P., Wahle, M., Zeng, W. F., Zhou, X. X., Brunner, A. D., Richter, S., Levesque, M. P., Theis, F. J., Steger, M. & Mann, Matthias, 2023, In: Molecular Systems Biology. 19, 9, 23 p., e11503.

      Research output: Contribution to journal › Journal article › Research › peer-review

    82. Published

      Revisiting biomarker discovery by plasma proteomics

      Geyer, P. E., Holdt, L. M., Teupser, D. & Mann, Matthias, 26 Sep 2017, In: Molecular Systems Biology. 13, 9, 16 p., 942.

      Research output: Contribution to journal › Review › Research › peer-review

    83. Published

      Response to Raaijmakers & Medema

      Zhang, G., Kruse, Thomas, Boldú, C. G., Garvanska, Dimitriya Hristoforova, Coscia, F., Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In: The EMBO Journal. 38, 22, 5 p., e103547.

      Research output: Contribution to journal › Comment/debate › Research

    84. Published

      Reply to "Quality control requirements for the correct annotation of lipidomics data"

      Vasilopoulou, C. G., Sulek, K., Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 2021, In: Nature Communications. 12, 4 p., 4772.

      Research output: Contribution to journal › Journal article › Research

    85. Published

      Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts

      Larsen, N. B., Gao, A. O., Sparks, J. L., Gallina, I., Wu, R. A., Mann, Matthias, Räschle, M., Walter, J. C. & Duxin, Julien, 2019, In: Molecular Cell. 73, 3, p. 574-588.e7 23 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    86. Published

      Region and cell-type resolved quantitative proteomic map of the human heart

      Doll, S., Dreßen, M., Geyer, P. E., Itzhak, D. N., Braun, C., Doppler, S. A., Meier, F., Deutsch, M., Lahm, H., Lange, R., Krane, M. & Mann, Matthias, 13 Nov 2017, In: Nature Communications. 8, 1, 13 p., 1469.

      Research output: Contribution to journal › Journal article › Research › peer-review

    87. Published

      Rapid proteomic analysis for solid tumors reveals LSD1 as a drug target in an end-stage cancer patient

      Doll, S., Kriegmair, M. C., Santos, A., Wierer, M., Coscia, F., Neil, H. M., Porubsky, S., Geyer, P. E., Mund, Andreas, Nuhn, P. & Mann, Matthias, 2018, In: Molecular Oncology. 12, 8, p. 1296-1307 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    88. Published

      Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF

      Skowronek, P., Thielert, Marvin Christoffer, Voytik, E., Tanzer, M. C., Hansen, F. M., Willems, S., Karayel, O., Brunner, A., Meier, F. & Mann, Matthias, 2022, In: Molecular and Cellular Proteomics. 21, 9, 15 p., 100279.

      Research output: Contribution to journal › Journal article › Research › peer-review

    89. Published

      Quick and clean: Cracking sentences encoded in E. coli by LC-MS/MS, de novo sequencing, and dictionary search

      Niu, Lili & Mann, Matthias, 2019, In: EuPA Open Proteomics. 22-23, p. 30-35 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    90. Published

      Quantitative, high-resolution proteomics for data-driven systems biology

      Cox, J. & Mann, Matthias, 7 Jul 2011, In: Annual Review of Biochemistry. 80, p. 273-299 27 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels

      Olsen, Jesper Velgaard, Nielsen, P. A., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2007, In: Brain Research. 1134, 1, p. 95-106 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. Quantitative proteomic assessment of very early cellular signaling events

      Dengjel, J., Akimov, V., Olsen, Jesper Velgaard, Bunkenborg, J., Mann, Matthias, Blagoev, B. & Andersen, J. S., 2007, In: Nature Biotechnology. 25, 5, p. 566-8 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

      Klass, D. M., Scheibe, M., Butter, F., Hogan, G. J., Mann, Matthias & Brown, P. O., Jun 2013, In: Genome Research. 23, 6, p. 1028-38 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    94. Published

      Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

      Olsen, Jesper Velgaard, Vermeulen, M., Santamaria, A., Kumar, C., Miller, M. L., Jensen, Lars Juhl, Gnad, F., Cox, J., Jensen, T. S., Nigg, E. A., Brunak, Søren & Mann, Matthias, 2010, In: Science Signaling. 3, 104, p. ra3 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    95. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

      Gruhler, A., Olsen, Jesper Velgaard, Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, Matthias & Jensen, O. N., 2005, In: Molecular and Cellular Proteomics. 4, 3, p. 310-27 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

      Pan, C., Gnad, F., Olsen, Jesper Velgaard & Mann, Matthias, 2008, In: Proteomics. 8, 21, p. 4534-46 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    97. Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators

      Scheibe, M., Arnoult, N., Kappei, D., Buchholz, F., Decottignies, A., Butter, F. & Mann, Matthias, 22 Oct 2013, In: Genome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators

      Scheibe, M., Arnoult, N., Kappei, D., Buchholz, F., Decottignies, A., Butter, F. & Mann, Matthias, 22 Oct 2013, In: Genome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death

      Tanzer, M. C., Frauenstein, A., Stafford, C. A., Phulphagar, K., Mann, Matthias & Meissner, F., 28 Jan 2020, In: Cell Reports. 30, 4, p. 1260-1270.e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Published

      Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood Samples

      Boersema, P. J., Geiger, T., Wiśniewski, J. R. & Mann, Matthias, 1 Jan 2013, In: Molecular & Cellular Proteomics. 12, 1, p. 158-171 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 5650809