Matthias Mann

Matthias Mann

Professor, head of research, Professor

Member of:

    ORCID: 0000-0003-1292-4799

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    1. Defining the RBPome of primary T helper cells to elucidate higher-order Roquin-mediated mRNA regulation

      Hoefig, K. P., Reim, A., Gallus, C., Wong, E. H., Behrens, G., Conrad, C., Xu, M., Kifinger, L., Ito-Kureha, T., Defourny, K. A. Y., Geerlof, A., Mautner, J., Hauck, S. M., Baumjohann, D., Feederle, R., Mann, Matthias, Wierer, M., Glasmacher, E. & Heissmeyer, V., 1 Sep 2021, In: Nature Communications. 12, 1, p. 5208

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      FAM111 protease activity undermines cellular fitness and is amplified by gain-of-function mutations in human disease

      Hoffmann, Saskia, Pentakota, S., Mund, Andreas, Haahr, Peter Thorlund, Coscia, F., Gallo, M., Mann, Matthias, Taylor, Nicholas M I & Mailand, Niels, 2020, In: EMBO Reports. 21, 10, 14 p., e50662.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress

      Hoffmann, Saskia, Smedegaard, S., Nakamura, K., Mortuza, G. B., Räschle, M., Ibañez de Opakua, A., Oka, Y., Feng, Y., Blanco, F. J., Mann, Matthias, Montoya, Guillermo, Groth, Anja, Bekker-Jensen, Simon Holst & Mailand, Niels, 4 Jan 2016, In: The Journal of Cell Biology. 212, 1, p. 63-75

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans

      Holdt, L. M., Stahringer, A., Sass, K., Pichler, G., Kulak, N. A., Wilfert, W., Kohlmaier, A., Herbst, A., Northoff, B. H., Nicolaou, A., Gäbel, G., Beutner, F., Scholz, M., Thiery, J., Musunuru, K., Krohn, K., Mann, Matthias & Teupser, D., 19 Aug 2016, In: Nature Communications. 7, p. 12429

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens

      Hornburg, D., Kruse, T., Anderl, F., Daschkin, C., Semper, R. P., Klar, K., Guenther, A., Mejías-Luque, R., Schneiderhan-Marra, N., Mann, Matthias, Meissner, F. & Gerhard, M., 22 Nov 2019, In: Scientific Reports. 9, 1, p. 17401

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      A Primer on Concepts and Applications of Proteomics in Neuroscience

      Hosp, F. & Mann, Matthias, 1 Nov 2017, In: Neuron. 96, 3, p. 558-571 14 p.

      Research output: Contribution to journal › Review › Research › peer-review

    7. Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function

      Hosp, F., Gutiérrez-Ángel, S., Schaefer, M. H., Cox, J., Meissner, F., Hipp, M. S., Hartl, F., Klein, R., Dudanova, I. & Mann, Matthias, 21 Nov 2017, In: Cell Reports. 21, 8, p. 2291-2303 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Lysine acetylation in mitochondria: From inventory to function

      Hosp, F., Lassowskat, I., Santoro, V., De Vleesschauwer, D., Fliegner, D., Redestig, H., Mann, Matthias, Christian, S., Hannah, M. A. & Finkemeier, I., Mar 2017, In: Mitochondrion. 33, p. 58-71 14 p.

      Research output: Contribution to journal › Review › Research › peer-review

    9. A double-barrel LC-MS/MS system to quantify 96 interactomes per day

      Hosp, F., Scheltema, R. A., Eberl, C., Kulak, N. A., Keilhauer, E. C., Mayr, K. & Mann, Matthias, 17 Apr 2015, In: Molecular and Cellular Proteomics. 14, 7, p. 2030-41 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape

      Hubel, P., Urban, C., Bergant, V., Schneider, W. M., Knauer, B., Stukalov, A., Scaturro, P., Mann, A., Brunotte, L., Hoffmann, H. H., Schoggins, J. W., Schwemmle, M., Mann, Matthias, Rice, C. M. & Pichlmair, A., 4 Mar 2019, (E-pub ahead of print) In: Nature Immunology.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

      Humphrey, S. J., Karayel, O., James, D. E. & Mann, Matthias, 2018, In: Nature Protocols (Print). 13, p. 1897-1916 20 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications

      Iglesias Gato, Diego, Thysell, E., Tyanova, S., Crnalic, S., Santos, A., Lima, T. S., Geiger, T., Cox, J., Widmark, A., Bergh, A., Mann, Matthias, Flores-Morales, A. & Wikström, P., 1 Nov 2018, In: Clinical Cancer Research. 24, 21, p. 5433-5444 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      The Proteome of Primary Prostate Cancer

      Iglesias Gato, Diego, Wikström, P., Tyanova, S., Lavallee, C., Thysell, E., Carlsson, J., Hägglöf, C., Cox, J., Andrén, O., Stattin, P., Egevad, L., Widmark, A., Bjartell, A., Collins, C. C., Bergh, A., Geiger, T., Mann, Matthias & Flores-Morales, A., May 2016, In: European Urology. 69, 5, p. 942-952 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells

      Itzhak, D. N., Sacco, F., Nagaraj, N., Tyanova, S., Mann, Matthias & Murgia, M., 2019, In: Disease Models & Mechanisms. 12, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β

      J D'Souza, R. C., Knittle, A. M., Nagaraj, N., van Dinther, M., Choudhary, Chunaram, Ten Dijke, P., Mann, Matthias & Sharma, K., Jul 2014, In: Science Signaling. 7, 335, p. rs5 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Interaction of 7SK with the Smn complex modulates snRNP production

      Ji, C., Bader, J., Ramanathan, P., Hennlein, L., Meissner, F., Jablonka, S., Mann, Matthias, Fischer, U., Sendtner, M. & Briese, M., 2021, In: Nature Communications. 12, 1, 15 p., 1278.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry

      Jungmichel, S., Sylvestersen, K. B., Choudhary, Chunaram, Nguyen, S., Mann, Matthias & Nielsen, Michael Lund, 13 Feb 2014, In: Cell Reports. 6, 3, p. 578-91 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Phylointeractomics reconstructs functional evolution of protein binding

      Kappei, D., Scheibe, M., Paszkowski-Rogacz, M., Bluhm, A., Gossmann, T. I., Dietz, S., Dejung, M., Herlyn, H., Buchholz, F., Mann, Matthias & Butter, F., 8 Feb 2017, In: Nature Communications. 8, p. 14334

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment

      Kappei, D., Butter, F., Benda, C., Scheibe, M., Draškovič, I., Stevense, M., Novo, C. L., Basquin, C., Araki, M., Araki, K., Krastev, D. B., Kittler, R., Jessberger, R., Londoño-Vallejo, J. A., Mann, Matthias & Buchholz, F., 12 Jun 2013, In: E M B O Journal. 32, 12, p. 1681-701 21 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis

      Karayel, O., Xu, P., Bludau, I., Bhoopalan, S. V., Yao, Y., Rita, F. C. A., Santos, A., Schulman, B. A., Alpi, A. F., Weiss, M. J. & Mann, Matthias, 2020, In: Molecular Systems Biology. 16, 12, 22 p., 9813.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Accurate MS-based Rab10 Phosphorylation Stoichiometry Determination as Readout for LRRK2 Activity in Parkinson’s Disease

      Karayel, O., Tonelli, F., Virreira Winter, S., Geyer, P. E., Fan, Y., Sammler, E. M., Alessi, D., Steger, M. & Mann, Matthias, 2020, In: Molecular and Cellular Proteomics. p. 1546-1560

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. DIA-based systems biology approach unveils E3 ubiquitin ligase-dependent responses to a metabolic shift

      Karayel, O., Michaelis, A. C., Mann, Matthias, Schulman, B. A. & Langlois, C. R., 22 Dec 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 51, p. 32806-32815 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Proteome profiling of cerebrospinal fluid reveals biomarker candidates for Parkinson's disease

      Karayel, O., Virreira Winter, S., Padmanabhan, S., Kuras, Y. I., Vu, D. T., Tuncali, I., Merchant, K., Wills, A. M., Scherzer, C. R. & Mann, Matthias, 2022, In: Cell Reports Medicine. 3, 6, 20 p., 100661.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Identification of early neurodegenerative pathways in progressive multiple sclerosis

      Kaufmann, M., Schaupp, A. L., Sun, R., Coscia, F., Dendrou, C. A., Cortes, A., Kaur, G., Evans, H. G., Mollbrink, A., Navarro, J. F., Sonner, J. K., Mayer, C., DeLuca, G. C., Lundeberg, J., Matthews, P. M., Attfield, K. E., Friese, M. A., Mann, Matthias & Fugger, Lars, 2022, In: Nature Neuroscience. 25, p. 944-955

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression

      Kaya-Çopur, A., Marchiano, F., Hein, M. Y., Alpern, D., Russeil, J., Luis, N. M., Mann, Matthias, Deplancke, B., Habermann, B. H. & Schnorrer, F., 6 Jan 2021, In: eLife. 10

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. HCD Fragmentation of Glycated Peptides

      Keilhauer, E. C., Geyer, P. E. & Mann, Matthias, 5 Aug 2016, In: Journal of Proteome Research. 15, 8, p. 2881-90 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Soluble Oligomers of PolyQ-Expanded Huntingtin Target a Multiplicity of Key Cellular Factors

      Kim, Y. E., Hosp, F., Frottin, F., Ge, H., Mann, Matthias, Hayer-Hartl, M. & Hartl, F. U., 15 Sep 2016, In: Molecular Cell. 63, 6, p. 951-64 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Atorvastatin for prevention of disease progression and hospitalisation in liver cirrhosis: protocol for a randomised, double-blind, placebo-controlled trial

      Kimer, N., Grønbæk, H., Fred, Rikard Göran, Hansen, Torben, Deshmukh, Atul Shahaji, Mann, Matthias & Bendtsen, Flemming, 2020, In: BMJ Open. 10, 1, 7 p., e035284.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

      Klass, D. M., Scheibe, M., Butter, F., Hogan, G. J., Mann, Matthias & Brown, P. O., Jun 2013, In: Genome Research. 23, 6, p. 1028-38 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. The low molecular weight proteome of Halobacterium salinarum

      Klein, C., Aivaliotis, M., Olsen, Jesper Velgaard, Falb, M., Besir, H., Scheffer, B., Bisle, B., Tebbe, A., Konstantinidis, K., Siedler, F., Pfeiffer, F., Mann, Matthias & Oesterhelt, D., 2007, In: Journal of Proteome Research. 6, 4, p. 1510-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation

      Knipscheer, P., van Dijk, W. J., Olsen, Jesper Velgaard, Mann, Matthias & Sixma, T. K., 2007, In: EMBO Journal. 26, 11, p. 2797-807 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization

      Korge, S., Maier, B., Brüning, F., Ehrhardt, L., Korte, T., Mann, Matthias, Herrmann, A., Robles, M. S. & Kramer, A., Jan 2018, In: P L o S Genetics. 14, 1, p. e1007189

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Published

      Catching Lipid Droplet Contacts by Proteomics

      Krahmer, N. & Mann, Matthias, 2019, In: Contact. 2, p. 1-8 8 p.

      Research output: Contribution to journal › Review › Research › peer-review

    34. Protein correlation profiles identify lipid droplet proteins with high confidence

      Krahmer, N., Hilger, M., Kory, N., Wilfling, F., Stoehr, G., Mann, Matthias, Farese, R. V. & Walther, T. C., May 2013, In: Molecular & Cellular Proteomics. 12, 5, p. 1115-26 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis

      Krahmer, N., Najafi, B., Schueder, F., Quagliarini, F., Steger, M., Seitz, S., Kasper, R., Salinas, F., Cox, J., Uhlenhaut, N. H., Walther, T. C., Jungmann, R., Zeigerer, A., Borner, G. H. H. & Mann, Matthias, 2018, In: Developmental Cell. 47, 2, p. 205-221.E7

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics

      Krismer, Elena, Bludau, I., Strauss, Maximilian & Mann, Matthias, 2023, In: Bioinformatics. 39, 8, 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli

      Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In: Genes & Development. 20, 1, p. 113-124 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

      Kruse, T., Benz, C., Garvanska, D. H., Lindqvist, R., Mihalic, F., Coscia, F., Inturi, R., Sayadi, A., Simonetti, L., Nilsson, E., Ali, M., Kliche, J., Moliner Morro, A., Mund, A., Andersson, E., McInerney, G., Mann, M., Jemth, P., Davey, N. E., Överby, A. K. & 2 others, Nilsson, Jakob & Ivarsson, Y., 2021, In: Nature Communications. 12, 1, 13 p., 6761.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics

      Kulak, N. A., Geyer, P. E. & Mann, Matthias, Apr 2017, In: Molecular and Cellular Proteomics. 16, 4, p. 694-705 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Phosphorylation of serine-893 in CARD11 suppresses the formation and activity of the CARD11-BCL10-MALT1 complex in T and B cells

      Kutzner, K., Woods, S., Karayel, O., Gehring, T., Yin, H., Flatley, A., Graß, C., Wimberger, N., Tofaute, M. J., Seeholzer, T., Feederle, R., Mann, Matthias & Krappmann, D., Mar 2022, In: Science Signaling. 15, 723, p. eabk3083

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function

      Kälin, S., Becker, M., Ott, V. B., Serr, I., Hosp, F., Mollah, M. M. H., Keipert, S., Lamp, D., Rohner-Jeanrenaud, F., Flynn, V. K., Scherm, M. G., Nascimento, L. F. R., Gerlach, K., Popp, V., Dietzen, S., Bopp, T., Krishnamurthy, P., Kaplan, M. H., Serrano, M., Woods, S. C. & 10 others, Tripal, P., Palmisano, R., Jastroch, M., Blüher, M., Wolfrum, C., Weigmann, B., Ziegler, A., Mann, Matthias, Tschöp, M. H. & Daniel, C., 5 Sep 2017, In: Cell Metabolism. 26, 3, p. 475-492.e7

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage

      Lahm, H., Dressen, M., Beck, N., Doppler, S., Deutsch, M., Matsushima, S., Neb, I., Koenig, K. C., Sideris, K., Voss, S., Eschenbach, L., Puluca, N., Deisenhofer, I., Doll, S., Holdenrieder, S., Mann, Matthias, Lange, R. & Krane, M., 2019, In: Scientific Reports. 9, 8 p., 9986.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      Advancing cell biology through proteomics in space and time (PROSPECTS)

      Lamond, A. I., Uhlen, M., Horning, S., Makarov, A., Robinson, C. V., Serrano, L., Hartl, F. U., Baumeister, W., Werenskiold, A. K., Mann, Matthias, Andersen, J. S., Vorm, O., Linial, M. & Aebersold, R., 1 Mar 2012, In: Molecular & Cellular Proteomics. 11, 3, 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts

      Larsen, N. B., Gao, A. O., Sparks, J. L., Gallina, I., Wu, R. A., Mann, Matthias, Räschle, M., Walter, J. C. & Duxin, Julien, 2019, In: Molecular Cell. 73, 3, p. 574-588.e7 23 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex

      Link, S., Spitzer, R. M. M., Sana, M., Torrado, M., Völker-Albert, M. C., Keilhauer, E. C., Burgold, T., Pünzeler, S., Low, J. K. K., Lindström, I., Nist, A., Regnard, C., Stiewe, T., Hendrich, B., Imhof, A., Mann, Matthias, Mackay, J. P., Bartkuhn, M. & Hake, S. B., 16 Oct 2018, In: Nature Communications. 9, 1, p. 4300

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Cotranslational N-degron masking by acetylation promotes proteome stability in plants

      Linster, E., Forero Ruiz, F. L., Miklankova, P., Ruppert, T., Mueller, J., Armbruster, L., Gong, X., Serino, G., Mann, Matthias, Hell, R. & Wirtz, M., 2022, In: Nature Communications. 13, 1, p. 810

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK2 Parkinson's disease kinase

      Lis, P., Burel, S., Steger, M., Mann, Matthias, Brown, F., Diez, F., Tonelli, F., Holton, J. L., Ho, P. W., Ho, S., Chou, M., Polinski, N. K., Martinez, T. N., Davies, P. & Alessi, D. R., Jan 2018, In: Biochemical Journal. 475, 1, 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice

      Liu, J. J., Chiu, Y., Chen, C., Huang, P., Mann, Matthias & Liu-Chen, L., 15 Dec 2020, In: Neuropharmacology. 181, p. 108324

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Phosphoproteomic approach for agonist-specific signaling in mouse brains: mTOR pathway is involved in κ opioid aversion

      Liu, J. J., Chiu, Y., DiMattio, K. M., Chen, C., Huang, P., Gentile, T. A., Muschamp, J. W., Cowan, A., Mann, Matthias & Liu-Chen, L., 20 Jul 2018, (E-pub ahead of print) In: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      In vivo brain GPCR signaling elucidated by phosphoproteomics

      Liu, J. J., Sharma, K., Zangrandi, L., Chen, C., Humphrey, S. J., Chiu, Y., Spetea, M., Liu-Chen, L., Schwarzer, C. & Mann, Matthias, 2018, In: Science (New York, N.Y.). 360, 6395, p. 1-11

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Linkage-specific ubiquitin chain formation depends on a lysine hydrocarbon ruler

      Liwocha, J., Krist, D. T., van der Heden van Noort, G. J., Hansen, F. M., Truong, V. H., Karayel, O., Purser, N., Houston, D., Burton, N., Bostock, M. J., Sattler, M., Mann, Matthias, Harrison, J. S., Kleiger, G., Ovaa, H. & Schulman, B. A., Mar 2021, In: Nature Chemical Biology. 17, 3, p. 272-279 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Published

      Democratizing knowledge representation with BioCypher

      Lobentanzer, S., Aloy, P., Baumbach, J., Bohar, B., Carey, V. J., Charoentong, P., Danhauser, K., Doğan, T., Dreo, J., Dunham, I., Farr, E., Fernandez-Torras, A., Gyori, B. M., Hartung, M., Hoyt, C. T., Klein, C., Korcsmaros, T., Maier, A., Mann, M., Ochoa, D. & 12 others, Pareja-Lorente, E., Popp, F., Preusse, M., Probul, N., Schwikowski, B., Sen, B., Strauss, Maximilian, Turei, D., Ulusoy, E., Waltemath, D., Wodke, J. A. H. & Saez-Rodriguez, J., 2023, In: Nature Biotechnology. 41, p. 1056-1059

      Research output: Contribution to journal › Letter › Research › peer-review

    53. Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer

      Lu, A., Waanders, L. F., Almeida, R., Li, G., Allen, M., Cox, J., Olsen, Jesper Velgaard, Bonaldi, T. & Mann, Matthias, 1 Dec 2007, In: International Journal of Mass Spectrometry. 268, 2-3, p. 158-167 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Published

      Erratum: Evidence of extrapancreatic glucagon secretion in man. Diabetes 2016;65:585-597

      Lund, Asger Bach, Bagger, J. I., Albrechtsen, Nicolai Jacob Wewer, Christensen, M., Grøndahl, M., Hartmann, Bolette, Mathiesen, Elisabeth, Hansen, C. P., Storkholm, J. H., van Hall, Gerrit, Rehfeld, Jens Frederik, Hornburg, D., Meissner, F., Mann, Matthias, Larsen, S., Holst, Jens Juul, Vilsbøll, Tina & Knop, Filip Krag, 1 Jun 2016, In: Diabetes. 65, 6, p. 1752 1 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    55. Published

      Evidence of Extrapancreatic Glucagon Secretion in Man

      Lund, Asger Bach, Bagger, J. I., Albrechtsen, Nicolai Jacob Wewer, Christensen, M., Grøndahl, M., Hartmann, Bolette, Mathiesen, Elisabeth, Hansen, C. P., Storkholm, J. H., van Hall, Gerrit, Rehfeld, Jens Frederik, Hornburg, D., Meissner, F., Mann, Matthias, Larsen, S., Holst, Jens Juul, Vilsbøll, Tina & Knop, Filip Krag, Mar 2016, In: Diabetes. 65, 3, p. 585-597 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1

      Ma-Lauer, Y., Carbajo-Lozoya, J., Hein, M. Y., Müller, M. A., Deng, W., Lei, J., Meyer, B., Kusov, Y., von Brunn, B., Bairad, D. R., Hünten, S., Drosten, C., Hermeking, H., Leonhardt, H., Mann, Matthias, Hilgenfeld, R. & von Brunn, A., 30 Aug 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. E5192-201

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

      Macek, B., Waanders, L. F., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Molecular and Cellular Proteomics. 5, 5, p. 949-58 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Global and site-specific quantitative phosphoproteomics: principles and applications

      Macek, B., Mann, Matthias & Olsen, J. V., 2009, In: Annual Review of Pharmacology and Toxicology. 49, p. 199-221 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

      Macek, B., Mijakovic, I., Olsen, Jesper Velgaard, Gnad, F., Kumar, C., Jensen, P. R. & Mann, Matthias, Feb 2008, In: Molecular and Cellular Proteomics. 6, 4, p. 697-707 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

      Macek, B., Gnad, F., Soufi, B., Kumar, C., Olsen, Jesper Velgaard, Mijakovic, I. & Mann, Matthias, 2007, In: Molecular and Cellular Proteomics. 7, 2, p. 299-307 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis

      Mann, K., Olsen, Jesper Velgaard, MaĉEk, B., Gnad, F. & Mann, Matthias, Jun 2008, In: World's Poultry Science Journal. 64, 2, p. 209-218 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. Phosphoproteins of the chicken eggshell calcified layer

      Mann, K., Olsen, Jesper Velgaard, Macek, B., Gnad, F. & Mann, Matthias, 2007, In: Proteomics. 7, 1, p. 106-15 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell

      Mann, K. & Mann, Matthias, 2013, In: Proteome Science. 11, 1, p. 40

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. In-depth proteomic analyses of (greenlip abalone) nacre and prismatic organic shell matrix

      Mann, K., Cerveau, N., Gummich, M., Fritz, M., Mann, Matthias & Jackson, D. J., 2018, In: Proteome Science. 16, p. 11

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. Published

      Error-tolerant identification of peptides in sequence databases by peptide sequence tags

      Mann, Matthias & Wilm, M., 15 Dec 1994, In: Analytical Chemistry. 66, 24, p. 4390-9 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    66. Published

      Proteomics for biomedicine: A half-completed journey

      Mann, Matthias, 1 Feb 2012, In: EMBO Molecular Medicine. 4, 2, p. 75-77 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Published

      The Coming Age of Complete, Accurate, and Ubiquitous Proteomes

      Mann, Matthias, Kulak, N. A., Nagaraj, N. & Cox, J., 21 Feb 2013, In: Molecular Cell. 49, 4, p. 583-590 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      The ever expanding scope of electrospray mass spectrometry-a 30 year journey

      Mann, Matthias, 2019, In: Nature Communications. 10, 3744.

      Research output: Contribution to journal › Comment/debate › Research

    69. Artificial intelligence for proteomics and biomarker discovery

      Mann, Matthias, Kumar, C., Zeng, W. & Strauss, M. T., 18 Aug 2021, In: Cell Systems. 12, 8, p. 759-770 12 p.

      Research output: Contribution to journal › Review › Research › peer-review

    70. Published

      The Origins of Organellar Mapping by Protein Correlation Profiling

      Mann, Matthias, 2020, In: Proteomics. 20, 23, 4 p., e1900330.

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Published

      Plenary Lecture Proteomics technologies for signaling, clinical applications

      Mann, Matthias, 2017, p. S62. 1 p.

      Research output: Contribution to conference › Conference abstract for conference › Research

    72. Published

      Development, use, application of novel TIMS-Tof system

      Mann, Matthias, 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S20 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    73. Origins of mass spectrometry-based proteomics

      Mann, Matthias, Nov 2016, In: Nature Reviews. Molecular Cell Biology. 17, 11, p. 678

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      Ethical Principles, Constraints and Opportunities in Clinical Proteomics

      Porsdam Mann, Sebastian, Treit, P. V., Geyer, P. E., Omenn, G. S. & Mann, Matthias, 2021, In: Molecular and Cellular Proteomics. 20, 14 p., 100046.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Inflammatory signaling in human tuberculosis granulomas is spatially organized

      Marakalala, M. J., Raju, R. M., Sharma, K., Zhang, Y. J., Eugenin, E. A., Prideaux, B., Daudelin, I. B., Chen, P., Booty, M. G., Kim, J. H., Eum, S. Y., Via, L. E., Behar, S. M., Barry, C. E., Mann, Matthias, Dartois, V. & Rubin, E. J., May 2016, In: Nature Medicine. 22, 5, p. 531-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    76. Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

      Marinkovic, M., Fuoco, C., Sacco, F., Cerquone Perpetuini, A., Giuliani, G., Micarelli, E., Pavlidou, T., Petrilli, L. L., Reggio, A., Riccio, F., Spada, F., Vumbaca, S., Zuccotti, A., Castagnoli, L., Mann, Matthias, Gargioli, C. & Cesareni, G., Jun 2019, In: Life Science Alliance. 2, 3

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

      Marx, H., Lemeer, S., Schliep, J. E., Matheron, L., Mohammed, S., Cox, J., Mann, Matthias, Heck, A. J. R. & Kuster, B., Jun 2013, In: Nature Biotechnology. 31, 6, p. 557-64 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers

      Mayr, C. H., Simon, L. M., Leuschner, G., Ansari, M., Schniering, J., Geyer, P. E., Angelidis, I., Strunz, M., Singh, P., Kneidinger, N., Reichenberger, F., Silbernagel, E., Böhm, S., Adler, H., Lindner, M., Maurer, B., Hilgendorff, A., Prasse, A., Behr, J., Mann, M. & 3 others, Eickelberg, O., Theis, F. J. & Schiller, H. B., 2021, In: EMBO Molecular Medicine. e12871.

      Research output: Contribution to journal › Journal article › Research › peer-review

    79. Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells

      Mehta, S., Buyanbat, A., Kai, Y., Karayel, O., Goldman, S. R., Seruggia, D., Zhang, K., Fujiwara, Y., Donovan, K. A., Zhu, Q., Yang, H., Nabet, B., Gray, N. S., Mann, Matthias, Fischer, E. S., Adelman, K. & Orkin, S. H., 18 Aug 2022, In: Cell Chemical Biology. 29, 8, p. 1273-1287.e8

      Research output: Contribution to journal › Journal article › Research › peer-review

    80. Published

      BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

      Meier, F., Geyer, P. E., Virreira Winter, S., Cox, J. & Mann, Matthias, 2018, In: Nature Methods. 15, 6, p. 440-448 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    81. Published

      diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

      Meier, F., Brunner, A., Frank, M., Ha, A., Bludau, I., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Bache, N., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2020, In: Nature Methods. 17, 12, p. 1229-1236

      Research output: Contribution to journal › Journal article › Research › peer-review

    82. Deep learning the collisional cross sections of the peptide universe from a million experimental values

      Meier, F., Köhler, N. D., Brunner, A. D., Wanka, J. M. H., Voytik, E., Strauss, M. T., Theis, F. J. & Mann, Matthias, 2021, In: Nature Communications. 12, 12 p., 1185.

      Research output: Contribution to journal › Journal article › Research › peer-review

    83. Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation - Serial Fragmentation (PASEF) in Proteomics

      Meier, F., Park, M. A. & Mann, Matthias, 17 Aug 2021, (E-pub ahead of print) In: Molecular and Cellular Proteomics. p. 100138

      Research output: Contribution to journal › Journal article › Research › peer-review

    84. Published

      Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

      Meier, F., Brunner, A., Koch, S., Koch, H., Lubeck, M., Krause, M., Goedecke, N., Decker, J., Kosinski, T., Park, M. A., Bache, N., Hoerning, O., Cox, J., Räther, O. & Mann, Matthias, 2018, In: Molecular and Cellular Proteomics. 17, 12, p. 2534-2545

      Research output: Contribution to journal › Journal article › Research › peer-review

    85. Published

      Parallel accumulation - serial fragmentation combined with data-independent acquisition (diaPASEF)

      Meier, F., Brunner, A., Frank, M., Ha, A., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S17 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    86. Published

      The emerging role of mass spectrometry-based proteomics in drug discovery

      Meissner, F., Geddes-McAlister, J., Mann, Matthias & Bantscheff, M., 2022, In: Nature Reviews Drug Discovery. 21, p. 637-654 18 p.

      Research output: Contribution to journal › Review › Research › peer-review

    87. Direct proteomic quantification of the secretome of activated immune cells

      Meissner, F., Scheltema, R. A., Mollenkopf, H. & Mann, Matthias, 26 Apr 2013, In: Science (New York, N.Y.). 340, 6131, p. 475-8 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    88. Published

      The social and structural architecture of the yeast protein interactome

      Michaelis, A. C., Brunner, A., Zwiebel, M., Meier, F., Strauss, Maximilian, Bludau, I. & Mann, Matthias, 2023, In: Nature. 624, 7990, p. 192-200 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    89. Published

      HYPK promotes the activity of the Nα-acetyltransferase A complex to determine proteostasis of nonAc-X2/N-degron-containing proteins

      Miklánková, P., Linster, E., Boyer, J., Weidenhausen, J., Mueller, J., Armbruster, L., Lapouge, K., De La Torre, C., Bienvenut, W., Sticht, C., Mann, Matthias, Meinnel, T., Sinning, I., Giglione, C., Hell, R. & Wirtz, M., 2022, In: Science Advances. 8, 24, 14 p., eabn6153.

      Research output: Contribution to journal › Journal article › Research › peer-review

    90. IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

      Mischnik, M., Sacco, F., Cox, J., Schneider, H., Schäfer, M., Hendlich, M., Crowther, D., Mann, Matthias & Klabunde, T., 1 Feb 2016, In: Bioinformatics (Online). 32, 3, p. 424-31 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

      Mootha, V. K., Bunkenborg, J., Olsen, Jesper Velgaard, Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., Patterson, N., Lander, E. S. & Mann, Matthias, 2003, In: Cell. 115, 5, p. 629-40 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics

      Mortensen, P., Gouw, J. W., Olsen, Jesper Velgaard, Ong, S., Rigbolt, K. T. G., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J. R., Blagoev, B., Andersen, J. S. & Mann, Matthias, Jan 2010, In: Journal of Proteome Research.

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Published

      Spatial characterization of single tumor cells by proteomics

      Mund, Andreas & Mann, Matthias, 2022, In: Nature Biotechnology. 40, 8, p. 1186-1187 2 p.

      Research output: Contribution to journal › Comment/debate › Research

    94. Published

      Unbiased spatial proteomics with single-cell resolution in tissues

      Mund, Andreas, Brunner, A. & Mann, Matthias, 2022, In: Molecular Cell. 82, 12, p. 2335-2349 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    95. Published

      Deep Visual Proteomics defines single-cell identity and heterogeneity

      Mund, A., Coscia, F., Kriston, A., Hollandi, R., Kovács, F., Brunner, A-D., Migh, E., Schweizer, L., Santos, A., Bzorek, M., Naimy, S., Rahbek-Gjerdrum, L. M., Dyring-Andersen, B., Bulkescher, J., Lukas, C., Eckert, M. A., Lengyel, E., Gnann, C., Lundberg, E., Horvath, P. & 1 others, Mann, Matthias, 2022, In: Nature Biotechnology. 40, p. 1231-1240

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. Published

      Foresight in clinical proteomics: current status, ethical considerations, and future perspectives

      Mundt Madsen, Filip Oskar, Albrechtsen, Nicolai Jacob Wewer, Porsdam Mann, Sebastian, Treit, P., Ghodgaonkar-Steger, M., O’Flaherty, M., Raijmakers, R., Vizcaíno, J. A., Heck, A. J. R. & Mann, Matthias, 2023, In: Open Research Europe. 3, 19 p., 59.

      Research output: Contribution to journal › Letter › Research › peer-review

    97. Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging

      Murgia, M., Toniolo, L., Nagaraj, N., Ciciliot, S., Vindigni, V., Schiaffino, S., Reggiani, C. & Mann, Matthias, 13 Jun 2017, In: Cell Reports. 19, 11, p. 2396-2409 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. Published

      Protein profile of fiber types in human skeletal muscle: a single-fiber proteomics study

      Murgia, M., Nogara, L., Baraldo, M., Reggiani, C., Mann, Matthias & Schiaffino, S., 2021, In: Skeletal Muscle. 11, 1, 19 p., 24.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. Published

      Plasma proteome profiling of healthy subjects undergoing bed rest reveals unloading-dependent changes linked to muscle atrophy

      Murgia, M., Brocca, L., Monti, E., Franchi, M. V., Zwiebel, M., Steigerwald, S., Giacomello, E., Sartori, R., Zampieri, S., Capovilla, G., Gasparini, M., Biolo, G., Sandri, M., Mann, Matthias & Narici, M. V., 2023, In: Journal of Cachexia, Sarcopenia and Muscle. 14, p. 439-451

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Published

      Single muscle fiber proteomics reveals unexpected mitochondrial specialization

      Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In: E M B O Reports. 16, 3, p. 387-95 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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