Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments. / Gauthier, Nicholas Paul; Larsen, Malene Erup; Wernersson, Rasmus; de Lichtenberg, Ulrik; Jensen, Lars Juhl; Brunak, Søren; Jensen, Thomas Skøt.

In: Nucleic Acids Research, Vol. 36, No. Database issue, 2008, p. D854-9.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Gauthier, NP, Larsen, ME, Wernersson, R, de Lichtenberg, U, Jensen, LJ, Brunak, S & Jensen, TS 2008, 'Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments', Nucleic Acids Research, vol. 36, no. Database issue, pp. D854-9. https://doi.org/10.1093/nar/gkm729

APA

Gauthier, N. P., Larsen, M. E., Wernersson, R., de Lichtenberg, U., Jensen, L. J., Brunak, S., & Jensen, T. S. (2008). Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Research, 36(Database issue), D854-9. https://doi.org/10.1093/nar/gkm729

Vancouver

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S et al. Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Research. 2008;36(Database issue):D854-9. https://doi.org/10.1093/nar/gkm729

Author

Gauthier, Nicholas Paul ; Larsen, Malene Erup ; Wernersson, Rasmus ; de Lichtenberg, Ulrik ; Jensen, Lars Juhl ; Brunak, Søren ; Jensen, Thomas Skøt. / Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments. In: Nucleic Acids Research. 2008 ; Vol. 36, No. Database issue. pp. D854-9.

Bibtex

@article{aae6b117b3c540c988e00ca8b9204ecd,
title = "Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments",
abstract = "The past decade has seen the publication of a large number of cell-cycle microarray studies and many more are in the pipeline. However, data from these experiments are not easy to access, combine and evaluate. We have developed a centralized database with an easy-to-use interface, Cyclebase.org, for viewing and downloading these data. The user interface facilitates searches for genes of interest as well as downloads of genome-wide results. Individual genes are displayed with graphs of expression profiles throughout the cell cycle from all available experiments. These expression profiles are normalized to a common timescale to enable inspection of the combined experimental evidence. Furthermore, state-of-the-art computational analyses provide key information on both individual experiments and combined datasets such as whether or not a gene is periodically expressed and, if so, the time of peak expression. Cyclebase is available at http://www.cyclebase.org.",
author = "Gauthier, {Nicholas Paul} and Larsen, {Malene Erup} and Rasmus Wernersson and {de Lichtenberg}, Ulrik and Jensen, {Lars Juhl} and S{\o}ren Brunak and Jensen, {Thomas Sk{\o}t}",
year = "2008",
doi = "10.1093/nar/gkm729",
language = "English",
volume = "36",
pages = "D854--9",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "Database issue",

}

RIS

TY - JOUR

T1 - Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments

AU - Gauthier, Nicholas Paul

AU - Larsen, Malene Erup

AU - Wernersson, Rasmus

AU - de Lichtenberg, Ulrik

AU - Jensen, Lars Juhl

AU - Brunak, Søren

AU - Jensen, Thomas Skøt

PY - 2008

Y1 - 2008

N2 - The past decade has seen the publication of a large number of cell-cycle microarray studies and many more are in the pipeline. However, data from these experiments are not easy to access, combine and evaluate. We have developed a centralized database with an easy-to-use interface, Cyclebase.org, for viewing and downloading these data. The user interface facilitates searches for genes of interest as well as downloads of genome-wide results. Individual genes are displayed with graphs of expression profiles throughout the cell cycle from all available experiments. These expression profiles are normalized to a common timescale to enable inspection of the combined experimental evidence. Furthermore, state-of-the-art computational analyses provide key information on both individual experiments and combined datasets such as whether or not a gene is periodically expressed and, if so, the time of peak expression. Cyclebase is available at http://www.cyclebase.org.

AB - The past decade has seen the publication of a large number of cell-cycle microarray studies and many more are in the pipeline. However, data from these experiments are not easy to access, combine and evaluate. We have developed a centralized database with an easy-to-use interface, Cyclebase.org, for viewing and downloading these data. The user interface facilitates searches for genes of interest as well as downloads of genome-wide results. Individual genes are displayed with graphs of expression profiles throughout the cell cycle from all available experiments. These expression profiles are normalized to a common timescale to enable inspection of the combined experimental evidence. Furthermore, state-of-the-art computational analyses provide key information on both individual experiments and combined datasets such as whether or not a gene is periodically expressed and, if so, the time of peak expression. Cyclebase is available at http://www.cyclebase.org.

U2 - 10.1093/nar/gkm729

DO - 10.1093/nar/gkm729

M3 - Journal article

C2 - 17940094

VL - 36

SP - D854-9

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - Database issue

ER -

ID: 40740282