Lars Juhl Jensen
Professor, Group Leader, Professor
Jensen Group
Blegdamsvej 3, 2200 København N., 06 Bygning 6, Building: 06-2-26
Member of:
STRING 7--recent developments in the integration and prediction of protein interactions
von Mering, C., Jensen, Lars Juhl, Kuhn, M., Chaffron, S., Doerks, T., Krüger, B., Snel, B. & Bork, P., 2007, In: Nucleic Acids Research. 35, Database issue, p. D358-62Research output: Contribution to journal › Journal article › Research › peer-review
STRING: known and predicted protein-protein associations, integrated and transferred across organisms
von Mering, C., Jensen, Lars Juhl, Snel, B., Hooper, S. D., Krupp, M., Foglierini, M., Jouffre, N., Huynen, M. A. & Bork, P., 2005, In: Nucleic Acids Research. 33, Database issue, p. D433-7Research output: Contribution to journal › Journal article › Research › peer-review
Quantitative phylogenetic assessment of microbial communities in diverse environments
von Mering, C., Hugenholtz, P., Raes, J., Tringe, S. G., Doerks, T., Jensen, Lars Juhl, Ward, N. & Bork, P., 2007, In: Science (New York, N.Y.). 315, 5815, p. 1126-30 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Protein feature based identification of cell cycle regulated proteins in yeast
de Lichtenberg, U., Jensen, T. S., Jensen, Lars Juhl & Brunak, S., 2003, In: Journal of Molecular Biology. 329, 4, p. 663-74 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Dynamic complex formation during the yeast cell cycle
de Lichtenberg, U., Jensen, Lars Juhl, Brunak, S. & Bork, P., 2005, In: Science (New York, N.Y.). 307, 5710, p. 724-7 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparison of computational methods for the identification of cell cycle-regulated genes
de Lichtenberg, U., Jensen, Lars Juhl, Fausbøll, A., Jensen, T. S., Bork, P. & Brunak, S., 2005, In: Bioinformatics. 21, 7, p. 1164-71 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Evolution of cell cycle control: same molecular machines, different regulation
de Lichtenberg, U., Jensen, T. S., Brunak, S., Bork, P. & Jensen, Lars Juhl, 2007, In: Cell Cycle. 6, 15, p. 1819-25 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research
Zahoránszky-Kőhalmi, G., Siramshetty, V. B., Kumar, P., Gurumurthy, M., Grillo, B., Mathew, B., Metaxatos, D., Backus, M., Mierzwa, T., Simon, R., Grishagin, I., Brovold, L., Mathé, E. A., Hall, M. D., Michael, S. G., Godfrey, A. G., Mestres, J., Jensen, Lars Juhl & Oprea, T. I., 2022, In: Journal of Chemical Information and Modeling. 62, 3, p. 718-729Research output: Contribution to journal › Journal article › Research › peer-review
- Published
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types
Zafeiropoulos, H., Paragkamian, S., Ninidakis, S., Pavlopoulos, G. A., Jensen, Lars Juhl & Pafilis, E., 2022, In: Microorganisms. 10, 2, 22 p., 293.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Homologous and non-homologous sequence methods for assigning protein function
Yeats, C., orengo, C., Veuthey, A. L., Boeckmann, B., Jensen, Lars Juhl, Valencia, A., Rausell, A. & Bork, P., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 213-238Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Differentially Expressed miRNAs in Ulcerative Colitis and Crohn's Disease
Yarani, R., Shojaeian, A., Palasca, Oana, Doncheva, Nadezhda Tsankova, Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2022, In: Frontiers in Immunology. 13, 21 p., 865777.Research output: Contribution to journal › Review › Research › peer-review
- Published
Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis
Yarani, R., Palasca, Oana, Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Svane, C. A. S., Mirza, A. H., Litman, Thomas, Holmskov, U., Bang-Berthelsen, C. H., Vilien, M., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2023, In: Frontiers in Molecular Biosciences. 9, 1081176.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis
Yarani, R., Palasca, Oana, Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Litman, Thomas, Holmskov, U., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2019, In: Journal of Crohn's and Colitis. 13, p. S129-S130Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
TIGA: target illumination GWAS analytics
Yang, J. J., Grissa, Dhouha, Lambert, C. G., Bologa, C. G., Mathias, S. L., Waller, A., Wild, D. J., Jensen, Lars Juhl & Oprea, T. I., 2021, In: Bioinformatics. 37, 21, p. 3865-3873Research output: Contribution to journal › Journal article › Research › peer-review
Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima
Worning, P., Jensen, Lars Juhl, Nelson, K. E., Brunak, S. & Ussery, D., 2000, In: Nucleic Acids Research. 28, 3, p. 706-9 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Origin of replication in circular prokaryotic chromosomes
Worning, P., Jensen, Lars Juhl, Hallin, P. F., Staerfeldt, H. & Ussery, D., 2006, In: Environmental Microbiology. 8, 2, p. 353-61 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
A new non-linear normalization method for reducing variability in DNA microarray experiments
Workman, C., Jensen, Lars Juhl, Jarmer, H. Ø., Berka, R., Gautier, L., Nielser, H. B., Saxild, H. H., Nielsen, C., Brunak, S. & Knudsen, S., 2002, In: Genome Biology (Online Edition). 3, 9, p. research0048Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts
Westergaard, D., Stærfeldt, H., Tønsberg, C., Jensen, Lars Juhl & Brunak, Søren, 2018, In: PLoS Computational Biology. 14, 2, 16 p., e1005962.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome
Weinert, B. T., Satpathy, S., Hansen, B. K., Lyon, D., Jensen, Lars Juhl & Choudhary, Chunaram, May 2017, In: Molecular and Cellular Proteomics. 16, p. 759-769Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation
Weinert, B. T., Wagner, S. A., Horn, H., Henriksen, P., Liu, W. R., Olsen, Jesper Velgaard, Jensen, Lars Juhl & Choudhary, Chunaram, 2011, In: Science Signaling. 4, 183, p. ra48Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington
Waters, M. R., Stafford jr., T., McDonald, H. G., Gustafson, C., Rasmussen, M., Cappellini, Enrico, Olsen, Jesper Velgaard, Szklarczyk, D. M., Jensen, Lars Juhl, Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Science. 334, 6054, p. 351-353 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines
Warrer, P., Jensen, P. B., Aagaard, L., Jensen, Lars Juhl, Brunak, S., Krag, M. H., Rossing, P., Almdal, T., Andersen, H. U. & Hansen, E. H., 20 May 2015, In: Journal of Research in Pharmacy Practice. 4, 2, p. 64-72 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using text-mining techniques in electronic patient records to identify ADRs from medicine use
Warrer, P., Hansen, E. H., Jensen, Lars Juhl & Aagaard, L., May 2012, In: British Journal of Clinical Pharmacology. 73, 5, p. 674-684 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Overview of the interactive task in BioCreative V
Wang, Q., S Abdul, S., Almeida, L., Ananiadou, S., Balderas-Martínez, Y. I., Batista-Navarro, R., Campos, D., Chilton, L., Chou, H-J., Contreras, G., Cooper, L., Dai, H-J., Ferrell, B., Fluck, J., Gama-Castro, S., George, N., Gkoutos, G., Irin, A. K., Jensen, L. J., Jimenez, S. & 36 others, , 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 18 p., baw119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix
Versace, E., Sgadò, P., George, J., Loveland, J. L., Ward, J., Thorpe, P., Jensen, Lars Juhl, Spencer, K. A., Paracchini, S. & Vallortigara, G., 2022, In: Scientific Reports. 12, 1, 12 p., 12086.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 9931112
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714
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TISSUES 2.0: an integrative web resource on mammalian tissue expression
Research output: Contribution to journal › Journal article › Research › peer-review
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518
downloads
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Research output: Contribution to journal › Journal article › Research › peer-review
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479
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Drug target ontology to classify and integrate drug discovery data
Research output: Contribution to journal › Journal article › Research › peer-review
Published