DanMAC5: a browser of aggregated sequence variants from 8,671 whole genome sequenced Danish individuals
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DanMAC5 : a browser of aggregated sequence variants from 8,671 whole genome sequenced Danish individuals. / Banasik, Karina; Møller, Peter L.; Techlo, Tanya R.; Holm, Peter C.; Walters, G. Bragi; Ingason, Andrés; Rosengren, Anders; Rohde, Palle D.; Kogelman, Lisette J.A.; Westergaard, David; Siggaard, Troels; Chmura, Piotr J.; Chalmer, Mona A.; Magnússon, Ólafur; Þórisson, Guðmundur; Stefánsson, Hreinn; Guðbjartsson, Daníel F.; Stefánsson, Kári; Olesen, Jes; Winther, Simon; Bøttcher, Morten; Brunak, Søren; Werge, Thomas; Nyegaard, Mette; Hansen, Thomas F.
In: BMC Genomic Data, Vol. 24, No. 1, 30, 2023.Research output: Contribution to journal › Comment/debate › Research › peer-review
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TY - JOUR
T1 - DanMAC5
T2 - a browser of aggregated sequence variants from 8,671 whole genome sequenced Danish individuals
AU - Banasik, Karina
AU - Møller, Peter L.
AU - Techlo, Tanya R.
AU - Holm, Peter C.
AU - Walters, G. Bragi
AU - Ingason, Andrés
AU - Rosengren, Anders
AU - Rohde, Palle D.
AU - Kogelman, Lisette J.A.
AU - Westergaard, David
AU - Siggaard, Troels
AU - Chmura, Piotr J.
AU - Chalmer, Mona A.
AU - Magnússon, Ólafur
AU - Þórisson, Guðmundur
AU - Stefánsson, Hreinn
AU - Guðbjartsson, Daníel F.
AU - Stefánsson, Kári
AU - Olesen, Jes
AU - Winther, Simon
AU - Bøttcher, Morten
AU - Brunak, Søren
AU - Werge, Thomas
AU - Nyegaard, Mette
AU - Hansen, Thomas F.
N1 - Publisher Copyright: © 2023, The Author(s).
PY - 2023
Y1 - 2023
N2 - Objectives: Allele counts of sequence variants obtained by whole genome sequencing (WGS) often play a central role in interpreting the results of genetic and genomic research. However, such variant counts are not readily available for individuals in the Danish population. Here, we present a dataset with allele counts for sequence variants (single nucleotide variants (SNVs) and indels) identified from WGS of 8,671 (5,418 females) individuals from the Danish population. The data resource is based on WGS data from three independent research projects aimed at assessing genetic risk factors for cardiovascular, psychiatric, and headache disorders. To enable the sharing of information on sequence variation in Danish individuals, we created summarized statistics on allele counts from anonymized data and made them available through the European Genome-phenome Archive (EGA, https://identifiers.org/ega.dataset:EGAD00001009756) and in a dedicated browser, DanMAC5 (available at www.danmac5.dk). The summary level data and the DanMAC5 browser provide insight into the allelic spectrum of sequence variants segregating in the Danish population, which is important in variant interpretation. Data description: Three WGS datasets with an average coverage of 30x were processed independently using the same quality control pipeline. Subsequently, we summarized, filtered, and merged allele counts to create a high-quality summary level dataset of sequence variants.
AB - Objectives: Allele counts of sequence variants obtained by whole genome sequencing (WGS) often play a central role in interpreting the results of genetic and genomic research. However, such variant counts are not readily available for individuals in the Danish population. Here, we present a dataset with allele counts for sequence variants (single nucleotide variants (SNVs) and indels) identified from WGS of 8,671 (5,418 females) individuals from the Danish population. The data resource is based on WGS data from three independent research projects aimed at assessing genetic risk factors for cardiovascular, psychiatric, and headache disorders. To enable the sharing of information on sequence variation in Danish individuals, we created summarized statistics on allele counts from anonymized data and made them available through the European Genome-phenome Archive (EGA, https://identifiers.org/ega.dataset:EGAD00001009756) and in a dedicated browser, DanMAC5 (available at www.danmac5.dk). The summary level data and the DanMAC5 browser provide insight into the allelic spectrum of sequence variants segregating in the Danish population, which is important in variant interpretation. Data description: Three WGS datasets with an average coverage of 30x were processed independently using the same quality control pipeline. Subsequently, we summarized, filtered, and merged allele counts to create a high-quality summary level dataset of sequence variants.
KW - Browser
KW - Minor allele counts
KW - Sequence variants
KW - Variant interpretation
KW - Whole genome sequencing
U2 - 10.1186/s12863-023-01132-7
DO - 10.1186/s12863-023-01132-7
M3 - Comment/debate
C2 - 37244984
AN - SCOPUS:85160372668
VL - 24
JO - BMC Genomic Data
JF - BMC Genomic Data
SN - 2730-6844
IS - 1
M1 - 30
ER -
ID: 357480128