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The scverse project provides a computational ecosystem for single-cell omics data analysis. / Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre; Büttner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte D.; Ramirez, Fidel; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna C.; Valiollah Pour Amiri, Valeh; Weiler, Philipp; Xing, Galen; Berger, Bonnie; Pe’er, Dana; Regev, Aviv; Teichmann, Sarah A.; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian J.; Scverse Community.
In:
Nature Biotechnology, Vol. 41, 2023, p. 604-606.
Research output: Contribution to journal › Letter › Research › peer-review
Harvard
Virshup, I, Bredikhin, D, Heumos, L, Palla, G, Sturm, G, Gayoso, A, Kats, I
, Koutrouli, M, Angerer, P, Bergen, V, Boyeau, P, Büttner, M, Eraslan, G, Fischer, D, Frank, M, Hong, J, Klein, M, Lange, M, Lopez, R, Lotfollahi, M, Luecken, MD, Ramirez, F, Regier, J, Rybakov, S, Schaar, AC, Valiollah Pour Amiri, V, Weiler, P, Xing, G, Berger, B, Pe’er, D, Regev, A, Teichmann, SA, Finotello, F, Wolf, FA, Yosef, N, Stegle, O, Theis, FJ & Scverse Community 2023, '
The scverse project provides a computational ecosystem for single-cell omics data analysis',
Nature Biotechnology, vol. 41, pp. 604-606.
https://doi.org/10.1038/s41587-023-01733-8APA
Virshup, I., Bredikhin, D., Heumos, L., Palla, G., Sturm, G., Gayoso, A., Kats, I.
, Koutrouli, M., Angerer, P., Bergen, V., Boyeau, P., Büttner, M., Eraslan, G., Fischer, D., Frank, M., Hong, J., Klein, M., Lange, M., Lopez, R., ... Scverse Community (2023).
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Nature Biotechnology,
41, 604-606.
https://doi.org/10.1038/s41587-023-01733-8Vancouver
Virshup I, Bredikhin D, Heumos L, Palla G, Sturm G, Gayoso A et al.
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Nature Biotechnology. 2023;41:604-606.
https://doi.org/10.1038/s41587-023-01733-8Author
Virshup, Isaac ; Bredikhin, Danila ; Heumos, Lukas ; Palla, Giovanni ; Sturm, Gregor ; Gayoso, Adam ; Kats, Ilia ; Koutrouli, Mikaela ; Angerer, Philipp ; Bergen, Volker ; Boyeau, Pierre ; Büttner, Maren ; Eraslan, Gokcen ; Fischer, David ; Frank, Max ; Hong, Justin ; Klein, Michal ; Lange, Marius ; Lopez, Romain ; Lotfollahi, Mohammad ; Luecken, Malte D. ; Ramirez, Fidel ; Regier, Jeffrey ; Rybakov, Sergei ; Schaar, Anna C. ; Valiollah Pour Amiri, Valeh ; Weiler, Philipp ; Xing, Galen ; Berger, Bonnie ; Pe’er, Dana ; Regev, Aviv ; Teichmann, Sarah A. ; Finotello, Francesca ; Wolf, F. Alexander ; Yosef, Nir ; Stegle, Oliver ; Theis, Fabian J. ; Scverse Community. / The scverse project provides a computational ecosystem for single-cell omics data analysis. In: Nature Biotechnology. 2023 ; Vol. 41. pp. 604-606.
Bibtex
@article{01cf93ebf3b14b6087f2ce1580afd530,
title = "The scverse project provides a computational ecosystem for single-cell omics data analysis",
author = "Isaac Virshup and Danila Bredikhin and Lukas Heumos and Giovanni Palla and Gregor Sturm and Adam Gayoso and Ilia Kats and Mikaela Koutrouli and Philipp Angerer and Volker Bergen and Pierre Boyeau and Maren B{\"u}ttner and Gokcen Eraslan and David Fischer and Max Frank and Justin Hong and Michal Klein and Marius Lange and Romain Lopez and Mohammad Lotfollahi and Luecken, {Malte D.} and Fidel Ramirez and Jeffrey Regier and Sergei Rybakov and Schaar, {Anna C.} and {Valiollah Pour Amiri}, Valeh and Philipp Weiler and Galen Xing and Bonnie Berger and Dana Pe{\textquoteright}er and Aviv Regev and Teichmann, {Sarah A.} and Francesca Finotello and Wolf, {F. Alexander} and Nir Yosef and Oliver Stegle and Theis, {Fabian J.} and {Scverse Community}",
note = "Funding Information: The authors would like to thank all scverse contributors who opened issues, contributed code or answered questions on scverse forums to guide novice and advanced users. D.B. acknowledges funding by the EMBL International PhD Programme and Darwin Trust Fellowship. G.S. was supported by a DOC fellowship from the Austrian Academy of Sciences. F.F. was supported by the Austrian Science Fund (FWF) (T 974-B30). G.P. is supported by the Helmholtz Association under the joint research school Munich School for Data Science. ",
year = "2023",
doi = "10.1038/s41587-023-01733-8",
language = "English",
volume = "41",
pages = "604--606",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "nature publishing group",
}
RIS
TY - JOUR
T1 - The scverse project provides a computational ecosystem for single-cell omics data analysis
AU - Virshup, Isaac
AU - Bredikhin, Danila
AU - Heumos, Lukas
AU - Palla, Giovanni
AU - Sturm, Gregor
AU - Gayoso, Adam
AU - Kats, Ilia
AU - Koutrouli, Mikaela
AU - Angerer, Philipp
AU - Bergen, Volker
AU - Boyeau, Pierre
AU - Büttner, Maren
AU - Eraslan, Gokcen
AU - Fischer, David
AU - Frank, Max
AU - Hong, Justin
AU - Klein, Michal
AU - Lange, Marius
AU - Lopez, Romain
AU - Lotfollahi, Mohammad
AU - Luecken, Malte D.
AU - Ramirez, Fidel
AU - Regier, Jeffrey
AU - Rybakov, Sergei
AU - Schaar, Anna C.
AU - Valiollah Pour Amiri, Valeh
AU - Weiler, Philipp
AU - Xing, Galen
AU - Berger, Bonnie
AU - Pe’er, Dana
AU - Regev, Aviv
AU - Teichmann, Sarah A.
AU - Finotello, Francesca
AU - Wolf, F. Alexander
AU - Yosef, Nir
AU - Stegle, Oliver
AU - Theis, Fabian J.
AU - Scverse Community
N1 - Funding Information:
The authors would like to thank all scverse contributors who opened issues, contributed code or answered questions on scverse forums to guide novice and advanced users. D.B. acknowledges funding by the EMBL International PhD Programme and Darwin Trust Fellowship. G.S. was supported by a DOC fellowship from the Austrian Academy of Sciences. F.F. was supported by the Austrian Science Fund (FWF) (T 974-B30). G.P. is supported by the Helmholtz Association under the joint research school Munich School for Data Science.
PY - 2023
Y1 - 2023
U2 - 10.1038/s41587-023-01733-8
DO - 10.1038/s41587-023-01733-8
M3 - Letter
C2 - 37037904
AN - SCOPUS:85152429226
VL - 41
SP - 604
EP - 606
JO - Nature Biotechnology
JF - Nature Biotechnology
SN - 1087-0156
ER -
