Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

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Standard

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. / Jespersen, Marie Louise; Munk, Patrick; Johansen, Joachim; Kaas, Rolf Sommer; Webel, Henry; Vigre, Håkan; Nielsen, Henrik Bjørn; Rasmussen, Simon; Aarestrup, Frank M.

In: Communications Biology , Vol. 6, 700, 2023.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Jespersen, ML, Munk, P, Johansen, J, Kaas, RS, Webel, H, Vigre, H, Nielsen, HB, Rasmussen, S & Aarestrup, FM 2023, 'Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering', Communications Biology , vol. 6, 700. https://doi.org/10.1038/s42003-023-05083-8

APA

Jespersen, M. L., Munk, P., Johansen, J., Kaas, R. S., Webel, H., Vigre, H., Nielsen, H. B., Rasmussen, S., & Aarestrup, F. M. (2023). Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. Communications Biology , 6, [700]. https://doi.org/10.1038/s42003-023-05083-8

Vancouver

Jespersen ML, Munk P, Johansen J, Kaas RS, Webel H, Vigre H et al. Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. Communications Biology . 2023;6. 700. https://doi.org/10.1038/s42003-023-05083-8

Author

Jespersen, Marie Louise ; Munk, Patrick ; Johansen, Joachim ; Kaas, Rolf Sommer ; Webel, Henry ; Vigre, Håkan ; Nielsen, Henrik Bjørn ; Rasmussen, Simon ; Aarestrup, Frank M. / Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. In: Communications Biology . 2023 ; Vol. 6.

Bibtex

@article{7d0a5825ea164ccda1ba266ea2102d9c,
title = "Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering",
abstract = "Most investigations of geographical within-species differences are limited to focusing on a single species. Here, we investigate global differences for multiple bacterial species using a dataset of 757 metagenomics sewage samples from 101 countries worldwide. The within-species variations were determined by performing genome reconstructions, and the analyses were expanded by gene focused approaches. Applying these methods, we recovered 3353 near complete (NC) metagenome assembled genomes (MAGs) encompassing 1439 different MAG species and found that within-species genomic variation was in 36% of the investigated species (12/33) coherent with regional separation. Additionally, we found that variation of organelle genes correlated less with geography compared to metabolic and membrane genes, suggesting that the global differences of these species are caused by regional environmental selection rather than dissemination limitations. From the combination of the large and globally distributed dataset and in-depth analysis, we present a wide investigation of global within-species phylogeny of sewage bacteria. The global differences found here emphasize the need for worldwide data sets when making global conclusions.",
author = "Jespersen, {Marie Louise} and Patrick Munk and Joachim Johansen and Kaas, {Rolf Sommer} and Henry Webel and H{\aa}kan Vigre and Nielsen, {Henrik Bj{\o}rn} and Simon Rasmussen and Aarestrup, {Frank M.}",
note = "Publisher Copyright: {\textcopyright} 2023, The Author(s).",
year = "2023",
doi = "10.1038/s42003-023-05083-8",
language = "English",
volume = "6",
journal = "Communications Biology",
issn = "2399-3642",
publisher = "nature publishing group",

}

RIS

TY - JOUR

T1 - Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

AU - Jespersen, Marie Louise

AU - Munk, Patrick

AU - Johansen, Joachim

AU - Kaas, Rolf Sommer

AU - Webel, Henry

AU - Vigre, Håkan

AU - Nielsen, Henrik Bjørn

AU - Rasmussen, Simon

AU - Aarestrup, Frank M.

N1 - Publisher Copyright: © 2023, The Author(s).

PY - 2023

Y1 - 2023

N2 - Most investigations of geographical within-species differences are limited to focusing on a single species. Here, we investigate global differences for multiple bacterial species using a dataset of 757 metagenomics sewage samples from 101 countries worldwide. The within-species variations were determined by performing genome reconstructions, and the analyses were expanded by gene focused approaches. Applying these methods, we recovered 3353 near complete (NC) metagenome assembled genomes (MAGs) encompassing 1439 different MAG species and found that within-species genomic variation was in 36% of the investigated species (12/33) coherent with regional separation. Additionally, we found that variation of organelle genes correlated less with geography compared to metabolic and membrane genes, suggesting that the global differences of these species are caused by regional environmental selection rather than dissemination limitations. From the combination of the large and globally distributed dataset and in-depth analysis, we present a wide investigation of global within-species phylogeny of sewage bacteria. The global differences found here emphasize the need for worldwide data sets when making global conclusions.

AB - Most investigations of geographical within-species differences are limited to focusing on a single species. Here, we investigate global differences for multiple bacterial species using a dataset of 757 metagenomics sewage samples from 101 countries worldwide. The within-species variations were determined by performing genome reconstructions, and the analyses were expanded by gene focused approaches. Applying these methods, we recovered 3353 near complete (NC) metagenome assembled genomes (MAGs) encompassing 1439 different MAG species and found that within-species genomic variation was in 36% of the investigated species (12/33) coherent with regional separation. Additionally, we found that variation of organelle genes correlated less with geography compared to metabolic and membrane genes, suggesting that the global differences of these species are caused by regional environmental selection rather than dissemination limitations. From the combination of the large and globally distributed dataset and in-depth analysis, we present a wide investigation of global within-species phylogeny of sewage bacteria. The global differences found here emphasize the need for worldwide data sets when making global conclusions.

U2 - 10.1038/s42003-023-05083-8

DO - 10.1038/s42003-023-05083-8

M3 - Journal article

C2 - 37422584

AN - SCOPUS:85164267680

VL - 6

JO - Communications Biology

JF - Communications Biology

SN - 2399-3642

M1 - 700

ER -

ID: 360684326