Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development
Research output: Contribution to journal › Journal article › Research › peer-review
Standard
Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development. / Hansen, Kasper Lage; Greenway, Steven C; Rosenfeld, Jill A; Wakimoto, Hiroko; Gorham, Joshua M; Segrè, Ayellet V; Roberts, Amy E; Smoot, Leslie B; Pu, William T; C Pereira, Alexandre; Mesquita, Sonia M; Tommerup, Niels; Brunak, Søren; Ballif, Blake C; Shaffer, Lisa G; Donahoe, Patricia K; Daly, Mark J; Seidman, Jonathan G; Seidman, Christine E; Larsen, Lars A.
In: Proceedings of the National Academy of Sciences USA (PNAS), Vol. 109, No. 35, 2012, p. 14035-40.Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
APA
Vancouver
Author
Bibtex
}
RIS
TY - JOUR
T1 - Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development
AU - Hansen, Kasper Lage
AU - Greenway, Steven C
AU - Rosenfeld, Jill A
AU - Wakimoto, Hiroko
AU - Gorham, Joshua M
AU - Segrè, Ayellet V
AU - Roberts, Amy E
AU - Smoot, Leslie B
AU - Pu, William T
AU - C Pereira, Alexandre
AU - Mesquita, Sonia M
AU - Tommerup, Niels
AU - Brunak, Søren
AU - Ballif, Blake C
AU - Shaffer, Lisa G
AU - Donahoe, Patricia K
AU - Daly, Mark J
AU - Seidman, Jonathan G
AU - Seidman, Christine E
AU - Larsen, Lars A
PY - 2012
Y1 - 2012
N2 - Congenital heart disease (CHD) occurs in ~1% of newborns. CHD arises from many distinct etiologies, ranging from genetic or genomic variation to exposure to teratogens, which elicit diverse cell and molecular responses during cardiac development. To systematically explore the relationships between CHD risk factors and responses, we compiled and integrated comprehensive datasets from studies of CHD in humans and model organisms. We examined two alternative models of potential functional relationships between genes in these datasets: direct convergence, in which CHD risk factors significantly and directly impact the same genes and molecules and functional convergence, in which risk factors significantly impact different molecules that participate in a discrete heart development network. We observed no evidence for direct convergence. In contrast, we show that CHD risk factors functionally converge in protein networks driving the development of specific anatomical structures (e.g., outflow tract, ventricular septum, and atrial septum) that are malformed by CHD. This integrative analysis of CHD risk factors and responses suggests a complex pattern of functional interactions between genomic variation and environmental exposures that modulate critical biological systems during heart development.
AB - Congenital heart disease (CHD) occurs in ~1% of newborns. CHD arises from many distinct etiologies, ranging from genetic or genomic variation to exposure to teratogens, which elicit diverse cell and molecular responses during cardiac development. To systematically explore the relationships between CHD risk factors and responses, we compiled and integrated comprehensive datasets from studies of CHD in humans and model organisms. We examined two alternative models of potential functional relationships between genes in these datasets: direct convergence, in which CHD risk factors significantly and directly impact the same genes and molecules and functional convergence, in which risk factors significantly impact different molecules that participate in a discrete heart development network. We observed no evidence for direct convergence. In contrast, we show that CHD risk factors functionally converge in protein networks driving the development of specific anatomical structures (e.g., outflow tract, ventricular septum, and atrial septum) that are malformed by CHD. This integrative analysis of CHD risk factors and responses suggests a complex pattern of functional interactions between genomic variation and environmental exposures that modulate critical biological systems during heart development.
U2 - 10.1073/pnas.1210730109
DO - 10.1073/pnas.1210730109
M3 - Journal article
C2 - 22904188
VL - 109
SP - 14035
EP - 14040
JO - Proceedings of the National Academy of Sciences of the United States of America
JF - Proceedings of the National Academy of Sciences of the United States of America
SN - 0027-8424
IS - 35
ER -
ID: 40803966