Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics

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Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour; Brunak, Søren.

In: Briefings in Bioinformatics, 01.08.2013.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Kouskoumvekaki, I, Shublaq, N & Brunak, S 2013, 'Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics', Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbt055

APA

Kouskoumvekaki, I., Shublaq, N., & Brunak, S. (2013). Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbt055

Vancouver

Kouskoumvekaki I, Shublaq N, Brunak S. Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. Briefings in Bioinformatics. 2013 Aug 1. https://doi.org/10.1093/bib/bbt055

Author

Kouskoumvekaki, Irene ; Shublaq, Nour ; Brunak, Søren. / Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. In: Briefings in Bioinformatics. 2013.

Bibtex

@article{92463430d7de46f7b1d5640b826fef29,
title = "Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics",
abstract = "As both the amount of generated biological data and the processing compute power increase, computational experimentation is no longer the exclusivity of bioinformaticians, but it is moving across all biomedical domains. For bioinformatics to realize its translational potential, domain experts need access to user-friendly solutions to navigate, integrate and extract information out of biological databases, as well as to combine tools and data resources in bioinformatics workflows. In this review, we present services that assist biomedical scientists in incorporating bioinformatics tools into their research. We review recent applications of Cytoscape, BioGPS and DAVID for data visualization, integration and functional enrichment. Moreover, we illustrate the use of Taverna, Kepler, GenePattern, and Galaxy as open-access workbenches for bioinformatics workflows. Finally, we mention services that facilitate the integration of biomedical ontologies and bioinformatics tools in computational workflows.",
author = "Irene Kouskoumvekaki and Nour Shublaq and S{\o}ren Brunak",
year = "2013",
month = aug,
day = "1",
doi = "10.1093/bib/bbt055",
language = "English",
journal = "Briefings in Bioinformatics",
issn = "1467-5463",
publisher = "Oxford University Press",

}

RIS

TY - JOUR

T1 - Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics

AU - Kouskoumvekaki, Irene

AU - Shublaq, Nour

AU - Brunak, Søren

PY - 2013/8/1

Y1 - 2013/8/1

N2 - As both the amount of generated biological data and the processing compute power increase, computational experimentation is no longer the exclusivity of bioinformaticians, but it is moving across all biomedical domains. For bioinformatics to realize its translational potential, domain experts need access to user-friendly solutions to navigate, integrate and extract information out of biological databases, as well as to combine tools and data resources in bioinformatics workflows. In this review, we present services that assist biomedical scientists in incorporating bioinformatics tools into their research. We review recent applications of Cytoscape, BioGPS and DAVID for data visualization, integration and functional enrichment. Moreover, we illustrate the use of Taverna, Kepler, GenePattern, and Galaxy as open-access workbenches for bioinformatics workflows. Finally, we mention services that facilitate the integration of biomedical ontologies and bioinformatics tools in computational workflows.

AB - As both the amount of generated biological data and the processing compute power increase, computational experimentation is no longer the exclusivity of bioinformaticians, but it is moving across all biomedical domains. For bioinformatics to realize its translational potential, domain experts need access to user-friendly solutions to navigate, integrate and extract information out of biological databases, as well as to combine tools and data resources in bioinformatics workflows. In this review, we present services that assist biomedical scientists in incorporating bioinformatics tools into their research. We review recent applications of Cytoscape, BioGPS and DAVID for data visualization, integration and functional enrichment. Moreover, we illustrate the use of Taverna, Kepler, GenePattern, and Galaxy as open-access workbenches for bioinformatics workflows. Finally, we mention services that facilitate the integration of biomedical ontologies and bioinformatics tools in computational workflows.

U2 - 10.1093/bib/bbt055

DO - 10.1093/bib/bbt055

M3 - Journal article

C2 - 23908249

JO - Briefings in Bioinformatics

JF - Briefings in Bioinformatics

SN - 1467-5463

ER -

ID: 58434386