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Democratizing knowledge representation with BioCypher. / Lobentanzer, Sebastian; Aloy, Patrick; Baumbach, Jan; Bohar, Balazs; Carey, Vincent J.; Charoentong, Pornpimol; Danhauser, Katharina; Doğan, Tunca; Dreo, Johann; Dunham, Ian; Farr, Elias; Fernandez-Torras, Adrià; Gyori, Benjamin M.; Hartung, Michael; Hoyt, Charles Tapley; Klein, Christoph; Korcsmaros, Tamas; Maier, Andreas; Mann, Matthias; Ochoa, David; Pareja-Lorente, Elena; Popp, Ferdinand; Preusse, Martin; Probul, Niklas; Schwikowski, Benno; Sen, Bünyamin; Strauss, Maximilian T.; Turei, Denes; Ulusoy, Erva; Waltemath, Dagmar; Wodke, Judith A.H.; Saez-Rodriguez, Julio.
In:
Nature Biotechnology, Vol. 41, 2023, p. 1056-1059.
Research output: Contribution to journal › Letter › Research › peer-review
Harvard
Lobentanzer, S, Aloy, P, Baumbach, J, Bohar, B, Carey, VJ, Charoentong, P, Danhauser, K, Doğan, T, Dreo, J, Dunham, I, Farr, E, Fernandez-Torras, A, Gyori, BM, Hartung, M, Hoyt, CT, Klein, C, Korcsmaros, T, Maier, A
, Mann, M, Ochoa, D, Pareja-Lorente, E, Popp, F, Preusse, M, Probul, N, Schwikowski, B, Sen, B
, Strauss, MT, Turei, D, Ulusoy, E, Waltemath, D, Wodke, JAH & Saez-Rodriguez, J 2023, '
Democratizing knowledge representation with BioCypher',
Nature Biotechnology, vol. 41, pp. 1056-1059.
https://doi.org/10.1038/s41587-023-01848-yAPA
Lobentanzer, S., Aloy, P., Baumbach, J., Bohar, B., Carey, V. J., Charoentong, P., Danhauser, K., Doğan, T., Dreo, J., Dunham, I., Farr, E., Fernandez-Torras, A., Gyori, B. M., Hartung, M., Hoyt, C. T., Klein, C., Korcsmaros, T., Maier, A.
, Mann, M., ... Saez-Rodriguez, J. (2023).
Democratizing knowledge representation with BioCypher.
Nature Biotechnology,
41, 1056-1059.
https://doi.org/10.1038/s41587-023-01848-yVancouver
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P et al.
Democratizing knowledge representation with BioCypher.
Nature Biotechnology. 2023;41:1056-1059.
https://doi.org/10.1038/s41587-023-01848-yAuthor
Lobentanzer, Sebastian ; Aloy, Patrick ; Baumbach, Jan ; Bohar, Balazs ; Carey, Vincent J. ; Charoentong, Pornpimol ; Danhauser, Katharina ; Doğan, Tunca ; Dreo, Johann ; Dunham, Ian ; Farr, Elias ; Fernandez-Torras, Adrià ; Gyori, Benjamin M. ; Hartung, Michael ; Hoyt, Charles Tapley ; Klein, Christoph ; Korcsmaros, Tamas ; Maier, Andreas ; Mann, Matthias ; Ochoa, David ; Pareja-Lorente, Elena ; Popp, Ferdinand ; Preusse, Martin ; Probul, Niklas ; Schwikowski, Benno ; Sen, Bünyamin ; Strauss, Maximilian T. ; Turei, Denes ; Ulusoy, Erva ; Waltemath, Dagmar ; Wodke, Judith A.H. ; Saez-Rodriguez, Julio. / Democratizing knowledge representation with BioCypher. In: Nature Biotechnology. 2023 ; Vol. 41. pp. 1056-1059.
Bibtex
@article{2727d17bcfcf4dc89afd33bcabfa8c49,
title = "Democratizing knowledge representation with BioCypher",
author = "Sebastian Lobentanzer and Patrick Aloy and Jan Baumbach and Balazs Bohar and Carey, {Vincent J.} and Pornpimol Charoentong and Katharina Danhauser and Tunca Doğan and Johann Dreo and Ian Dunham and Elias Farr and Adri{\`a} Fernandez-Torras and Gyori, {Benjamin M.} and Michael Hartung and Hoyt, {Charles Tapley} and Christoph Klein and Tamas Korcsmaros and Andreas Maier and Matthias Mann and David Ochoa and Elena Pareja-Lorente and Ferdinand Popp and Martin Preusse and Niklas Probul and Benno Schwikowski and B{\"u}nyamin Sen and Strauss, {Maximilian T.} and Denes Turei and Erva Ulusoy and Dagmar Waltemath and Wodke, {Judith A.H.} and Julio Saez-Rodriguez",
note = "Funding Information: This project has received funding from the European Union{\textquoteright}s Horizon 2020 research and innovation programme (grant agreement No 965193 (DECIDER) and 116030 (TransQST)), the German Federal Ministry of Education and Research (BMBF, Computational Life Sciences grant No 031L0181B and MSCoreSys research initiative research core SMART-CARE 031L0212A), the US Defense Advanced Research Projects Agency (DARPA) Young Faculty Award (W911NF-20-1-0255), and the Medical Informatics Initiative Germany, MIRACUM consortium (FKZ: 01ZZ2019). We thank Henning Hermjakob, Benjamin Haibe-Kains, Pablo Rodriguez-Mier, Daniel Dimitrov and Olga Ivanova for feedback on the manuscript and Ben Hitz and Pedro Assis for feedback on their use of BioCypher. ",
year = "2023",
doi = "10.1038/s41587-023-01848-y",
language = "English",
volume = "41",
pages = "1056--1059",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "nature publishing group",
}
RIS
TY - JOUR
T1 - Democratizing knowledge representation with BioCypher
AU - Lobentanzer, Sebastian
AU - Aloy, Patrick
AU - Baumbach, Jan
AU - Bohar, Balazs
AU - Carey, Vincent J.
AU - Charoentong, Pornpimol
AU - Danhauser, Katharina
AU - Doğan, Tunca
AU - Dreo, Johann
AU - Dunham, Ian
AU - Farr, Elias
AU - Fernandez-Torras, Adrià
AU - Gyori, Benjamin M.
AU - Hartung, Michael
AU - Hoyt, Charles Tapley
AU - Klein, Christoph
AU - Korcsmaros, Tamas
AU - Maier, Andreas
AU - Mann, Matthias
AU - Ochoa, David
AU - Pareja-Lorente, Elena
AU - Popp, Ferdinand
AU - Preusse, Martin
AU - Probul, Niklas
AU - Schwikowski, Benno
AU - Sen, Bünyamin
AU - Strauss, Maximilian T.
AU - Turei, Denes
AU - Ulusoy, Erva
AU - Waltemath, Dagmar
AU - Wodke, Judith A.H.
AU - Saez-Rodriguez, Julio
N1 - Funding Information:
This project has received funding from the European Union’s Horizon 2020 research and innovation programme (grant agreement No 965193 (DECIDER) and 116030 (TransQST)), the German Federal Ministry of Education and Research (BMBF, Computational Life Sciences grant No 031L0181B and MSCoreSys research initiative research core SMART-CARE 031L0212A), the US Defense Advanced Research Projects Agency (DARPA) Young Faculty Award (W911NF-20-1-0255), and the Medical Informatics Initiative Germany, MIRACUM consortium (FKZ: 01ZZ2019). We thank Henning Hermjakob, Benjamin Haibe-Kains, Pablo Rodriguez-Mier, Daniel Dimitrov and Olga Ivanova for feedback on the manuscript and Ben Hitz and Pedro Assis for feedback on their use of BioCypher.
PY - 2023
Y1 - 2023
U2 - 10.1038/s41587-023-01848-y
DO - 10.1038/s41587-023-01848-y
M3 - Letter
C2 - 37337100
AN - SCOPUS:85162101723
VL - 41
SP - 1056
EP - 1059
JO - Nature Biotechnology
JF - Nature Biotechnology
SN - 1087-0156
ER -
