Piotr Jaroslaw Chmura
Research programmer
Brunak Group
Blegdamsvej 3, 2200 København N., 06 Bygning 6, Building: 06-2-21
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Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models: [with Author Correction]
Allesøe, R. L., Lundgaard, A. T., Hernández Medina, R., Aguayo-Orozco, A., Johansen, J., Nissen, J. N., Brorsson, C., Mazzoni, G., Niu, L., Biel, J. H., Brasas, V., Webel, H., Benros, M. E., Pedersen, A. G., Chmura, P. J., Jacobsen, U. P., Mari, A., Koivula, R., Mahajan, A., Vinuela, A. & 31 others, , 2023, In: Nature Biotechnology. 41, 3, p. 399–408 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DanMAC5: a browser of aggregated sequence variants from 8,671 whole genome sequenced Danish individuals
Banasik, K., Møller, P. L., Techlo, T. R., Holm, P. C., Walters, G. B., Ingason, A., Rosengren, A., Rohde, P. D., Kogelman, L. J. A., Westergaard, D., Siggaard, T., Chmura, P. J., Chalmer, M. A., Magnússon, Ó., Þórisson, G., Stefánsson, H., Guðbjartsson, D. F., Stefánsson, K., Olesen, J., Winther, S. & 5 others, , 2023, In: BMC Genomic Data. 24, 1, 4 p., 30.Research output: Contribution to journal › Comment/debate › Research › peer-review
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INNODIA Master Protocol for the evaluation of investigational medicinal products in children, adolescents and adults with newly diagnosed type 1 diabetes
Dunger, D. B., Bruggraber, S. F. A., Mander, A. P., Marcovecchio, M. L., Tree, T., Chmura, Piotr Jaroslaw, Knip, M., Schulte, A. M., Mathieu, C. & INNODIA consortium, I. C., 2022, In: Trials. 23, 1, 9 p., 414.Research output: Contribution to journal › Journal article › Research › peer-review
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Classification of Left and Right Coronary Arteries in Coronary Angiographies Using Deep Learning
Eschen, Christian Kim, Banasik, Karina, Christensen, Alex Hørby, Chmura, Piotr Jaroslaw, Pedersen, F., Køber, Lars Valeur, Engstrøm, Thomas, Dahl, A. B., Brunak, Søren & Bundgård, Henning, 2022, In: Electronics (Switzerland). 11, 13, 9 p., 2087.Research output: Contribution to journal › Journal article › Research › peer-review
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Finding Ophthalmic Risk and Evaluating the Value of Eye exams and their predictive Reliability (FOREVER)—A cohort study in a Danish high street optician setting: Design and methodology
Freiberg, J., Rovelt, J., Gazzard, G., Cour, M. L., Kolko, M., Torp‐Pedersen, C., Benn, M., Brunak, S., Cour, M. L., Tolstrup, J., Toft‐Petersen, A. P., Burgdorf, K. S., Banasik, K., Chmura, P. J., Freiberg, J., Rovelt, J., Thornit, D. N., Foster, P., Gazzard, G., Crabb, D. P. & 4 others, , 2024, In: Acta Ophthalmologica. 102, 1, p. 80-90 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools
Friedrichs, M., Shoshi, A., Chmura, Piotr Jaroslaw, Ison, J., Schwammle, V., Schreiber, F., Hofestadt, R. & Sommer, B., 2020, In: Journal of integrative bioinformatics. 16, 8 p., 20190059.Research output: Contribution to journal › Journal article › Research › peer-review
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The bio.tools registry of software tools and data resources for the life sciences
Ison, J., Ienasescu, H., Chmura, P., Rydza, E., Ménager, H., Kalaš, M., Schwämmle, V., Grüning, B., Beard, N., Lopez, R., Duvaud, S., Stockinger, H., Persson, B., Vařeková, R. S., Raček, T., Vondrášek, J., Peterson, H., Salumets, A., Jonassen, I., Hooft, R. & 16 others, , 2019, In: Genome Biology. 20, 1, 4 p., 164.Research output: Contribution to journal › Letter › Research › peer-review
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Community curation of bioinformatics software and data resources
Ison, J., Ménager, H., Brancotte, B., Jaaniso, E., Salumets, A., Raček, T., Lamprecht, A. L., Palmblad, M., Kalaš, M., Chmura, Piotr Jaroslaw, Hancock, J. M., Schwämmle, V. & Ienasescu, H. I., 2020, In: Briefings in Bioinformatics. 21, 5, p. 1697-1705 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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biotoolsSchema: a formalized schema for bioinformatics software description
Ison, J., Ienasescu, H., Rydza, E., Chmura, Piotr Jaroslaw, Rapacki, K., Gaignard, A., Schwämmle, V., Van Helden, J., Kalaš, M. & Ménager, H., 2021, In: GigaScience. 10, 1, 19 p., giaa157.Research output: Contribution to journal › Journal article › Research › peer-review
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Supercomputing and Secure Cloud Infrastructures in Biology and Medicine
Jespersgaard, C., Syed, A., Chmura, Piotr Jaroslaw & Longreen, P., 2020, In: Annual Review of Biomedical Data Science. 3, p. 391-410 20 p.Research output: Contribution to journal › Review › Research › peer-review
ID: 233701104
Most downloads
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235
downloads
Survival prediction in intensive-care units based on aggregation of long-term disease history and acute physiology: a retrospective study of the Danish National Patient Registry and electronic patient records
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
144
downloads
The bio.tools registry of software tools and data resources for the life sciences
Research output: Contribution to journal › Letter › Research › peer-review
Published -
79
downloads
Dynamic and explainable machine learning prediction of mortality in patients in the intensive care unit: a retrospective study of high-frequency data in electronic patient records
Research output: Contribution to journal › Journal article › Research › peer-review
Published