Tools and data services registry: a community effort to document bioinformatics resources

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Tools and data services registry : a community effort to document bioinformatics resources. / Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans-Ioan; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C. E.; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren.

In: Nucleic Acids Research, Vol. 44, No. D1, 2016, p. D38-D47.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Ison, J, Rapacki, K, Ménager, H, Kalaš, M, Rydza, E, Chmura, P, Anthon, C, Beard, N, Berka, K, Bolser, D, Booth, T, Bretaudeau, A, Brezovsky, J, Casadio, R, Cesareni, G, Coppens, F, Cornell, M, Cuccuru, G, Davidsen, K, Vedova, GD, Dogan, T, Doppelt-Azeroual, O, Emery, L, Gasteiger, E, Gatter, T, Goldberg, T, Grosjean, M, Grüning, B, Helmer-Citterich, M, Ienasescu, H-I, Ioannidis, V, Jespersen, MC, Jimenez, R, Juty, N, Juvan, P, Koch, M, Laibe, C, Li, J-W, Licata, L, Mareuil, F, Mičetić, I, Friborg, RM, Moretti, S, Morris, C, Möller, S, Nenadic, A, Peterson, H, Profiti, G, Rice, P, Romano, P, Roncaglia, P, Saidi, R, Schafferhans, A, Schwämmle, V, Smith, C, Sperotto, MM, Stockinger, H, Vařeková, RS, Tosatto, SCE, de la Torre, V, Uva, P, Via, A, Yachdav, G, Zambelli, F, Vriend, G, Rost, B, Parkinson, H, Løngreen, P & Brunak, S 2016, 'Tools and data services registry: a community effort to document bioinformatics resources', Nucleic Acids Research, vol. 44, no. D1, pp. D38-D47. https://doi.org/10.1093/nar/gkv1116

APA

Ison, J., Rapacki, K., Ménager, H., Kalaš, M., Rydza, E., Chmura, P., Anthon, C., Beard, N., Berka, K., Bolser, D., Booth, T., Bretaudeau, A., Brezovsky, J., Casadio, R., Cesareni, G., Coppens, F., Cornell, M., Cuccuru, G., Davidsen, K., ... Brunak, S. (2016). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, 44(D1), D38-D47. https://doi.org/10.1093/nar/gkv1116

Vancouver

Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P et al. Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. 2016;44(D1):D38-D47. https://doi.org/10.1093/nar/gkv1116

Author

Ison, Jon ; Rapacki, Kristoffer ; Ménager, Hervé ; Kalaš, Matúš ; Rydza, Emil ; Chmura, Piotr ; Anthon, Christian ; Beard, Niall ; Berka, Karel ; Bolser, Dan ; Booth, Tim ; Bretaudeau, Anthony ; Brezovsky, Jan ; Casadio, Rita ; Cesareni, Gianni ; Coppens, Frederik ; Cornell, Michael ; Cuccuru, Gianmauro ; Davidsen, Kristian ; Vedova, Gianluca Della ; Dogan, Tunca ; Doppelt-Azeroual, Olivia ; Emery, Laura ; Gasteiger, Elisabeth ; Gatter, Thomas ; Goldberg, Tatyana ; Grosjean, Marie ; Grüning, Björn ; Helmer-Citterich, Manuela ; Ienasescu, Hans-Ioan ; Ioannidis, Vassilios ; Jespersen, Martin Closter ; Jimenez, Rafael ; Juty, Nick ; Juvan, Peter ; Koch, Maximilian ; Laibe, Camille ; Li, Jing-Woei ; Licata, Luana ; Mareuil, Fabien ; Mičetić, Ivan ; Friborg, Rune Møllegaard ; Moretti, Sebastien ; Morris, Chris ; Möller, Steffen ; Nenadic, Aleksandra ; Peterson, Hedi ; Profiti, Giuseppe ; Rice, Peter ; Romano, Paolo ; Roncaglia, Paola ; Saidi, Rabie ; Schafferhans, Andrea ; Schwämmle, Veit ; Smith, Callum ; Sperotto, Maria Maddalena ; Stockinger, Heinz ; Vařeková, Radka Svobodová ; Tosatto, Silvio C. E. ; de la Torre, Victor ; Uva, Paolo ; Via, Allegra ; Yachdav, Guy ; Zambelli, Federico ; Vriend, Gert ; Rost, Burkhard ; Parkinson, Helen ; Løngreen, Peter ; Brunak, Søren. / Tools and data services registry : a community effort to document bioinformatics resources. In: Nucleic Acids Research. 2016 ; Vol. 44, No. D1. pp. D38-D47.

Bibtex

@article{9b8f8513f58748fbbd40530141efb7d8,
title = "Tools and data services registry: a community effort to document bioinformatics resources",
abstract = "Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.",
author = "Jon Ison and Kristoffer Rapacki and Herv{\'e} M{\'e}nager and Mat{\'u}{\v s} Kala{\v s} and Emil Rydza and Piotr Chmura and Christian Anthon and Niall Beard and Karel Berka and Dan Bolser and Tim Booth and Anthony Bretaudeau and Jan Brezovsky and Rita Casadio and Gianni Cesareni and Frederik Coppens and Michael Cornell and Gianmauro Cuccuru and Kristian Davidsen and Vedova, {Gianluca Della} and Tunca Dogan and Olivia Doppelt-Azeroual and Laura Emery and Elisabeth Gasteiger and Thomas Gatter and Tatyana Goldberg and Marie Grosjean and Bj{\"o}rn Gr{\"u}ning and Manuela Helmer-Citterich and Hans-Ioan Ienasescu and Vassilios Ioannidis and Jespersen, {Martin Closter} and Rafael Jimenez and Nick Juty and Peter Juvan and Maximilian Koch and Camille Laibe and Jing-Woei Li and Luana Licata and Fabien Mareuil and Ivan Mi{\v c}eti{\'c} and Friborg, {Rune M{\o}llegaard} and Sebastien Moretti and Chris Morris and Steffen M{\"o}ller and Aleksandra Nenadic and Hedi Peterson and Giuseppe Profiti and Peter Rice and Paolo Romano and Paola Roncaglia and Rabie Saidi and Andrea Schafferhans and Veit Schw{\"a}mmle and Callum Smith and Sperotto, {Maria Maddalena} and Heinz Stockinger and Va{\v r}ekov{\'a}, {Radka Svobodov{\'a}} and Tosatto, {Silvio C. E.} and {de la Torre}, Victor and Paolo Uva and Allegra Via and Guy Yachdav and Federico Zambelli and Gert Vriend and Burkhard Rost and Helen Parkinson and Peter L{\o}ngreen and S{\o}ren Brunak",
note = "{\textcopyright} The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.",
year = "2016",
doi = "10.1093/nar/gkv1116",
language = "English",
volume = "44",
pages = "D38--D47",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",

}

RIS

TY - JOUR

T1 - Tools and data services registry

T2 - a community effort to document bioinformatics resources

AU - Ison, Jon

AU - Rapacki, Kristoffer

AU - Ménager, Hervé

AU - Kalaš, Matúš

AU - Rydza, Emil

AU - Chmura, Piotr

AU - Anthon, Christian

AU - Beard, Niall

AU - Berka, Karel

AU - Bolser, Dan

AU - Booth, Tim

AU - Bretaudeau, Anthony

AU - Brezovsky, Jan

AU - Casadio, Rita

AU - Cesareni, Gianni

AU - Coppens, Frederik

AU - Cornell, Michael

AU - Cuccuru, Gianmauro

AU - Davidsen, Kristian

AU - Vedova, Gianluca Della

AU - Dogan, Tunca

AU - Doppelt-Azeroual, Olivia

AU - Emery, Laura

AU - Gasteiger, Elisabeth

AU - Gatter, Thomas

AU - Goldberg, Tatyana

AU - Grosjean, Marie

AU - Grüning, Björn

AU - Helmer-Citterich, Manuela

AU - Ienasescu, Hans-Ioan

AU - Ioannidis, Vassilios

AU - Jespersen, Martin Closter

AU - Jimenez, Rafael

AU - Juty, Nick

AU - Juvan, Peter

AU - Koch, Maximilian

AU - Laibe, Camille

AU - Li, Jing-Woei

AU - Licata, Luana

AU - Mareuil, Fabien

AU - Mičetić, Ivan

AU - Friborg, Rune Møllegaard

AU - Moretti, Sebastien

AU - Morris, Chris

AU - Möller, Steffen

AU - Nenadic, Aleksandra

AU - Peterson, Hedi

AU - Profiti, Giuseppe

AU - Rice, Peter

AU - Romano, Paolo

AU - Roncaglia, Paola

AU - Saidi, Rabie

AU - Schafferhans, Andrea

AU - Schwämmle, Veit

AU - Smith, Callum

AU - Sperotto, Maria Maddalena

AU - Stockinger, Heinz

AU - Vařeková, Radka Svobodová

AU - Tosatto, Silvio C. E.

AU - de la Torre, Victor

AU - Uva, Paolo

AU - Via, Allegra

AU - Yachdav, Guy

AU - Zambelli, Federico

AU - Vriend, Gert

AU - Rost, Burkhard

AU - Parkinson, Helen

AU - Løngreen, Peter

AU - Brunak, Søren

N1 - © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

PY - 2016

Y1 - 2016

N2 - Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.

AB - Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.

U2 - 10.1093/nar/gkv1116

DO - 10.1093/nar/gkv1116

M3 - Journal article

C2 - 26538599

VL - 44

SP - D38-D47

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -

ID: 159214620