Lars Juhl Jensen

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Lars Juhl Jensen started his research career in Søren Brunak’s group at the Technical University of Denmark (DTU), from which he in 2002 received the Ph.D. degree in bioinformatics for his work on non-homology based protein function prediction. During this time, he also developed methods for visualization of microbial genomes, pattern recognition in promoter regions, and microarray analysis. From 2003 to 2008, he was at the European Molecular Biology Laboratory (EMBL) where he worked on literature mining, integration of large-scale experimental datasets, and analysis of biological interaction networks. Since the beginning of 2009, he has continued this line of research as a professor at the Novo Nordisk Foundation Center for Protein Research at the Panum Institute in Copenhagen and as a co-founder and scientific advisor of Intomics A/S. He is a co-author of more than 170 scientific publications that have in total received more than 20,000 citations. He was awarded the Lundbeck Foundation Talent Prize in 2003, his work on cell-cycle research was named “Break-through of the Year” in 2006 by the magazine Ingeniøren, his work on text mining won the first prize in the “Elsevier Grand Challenge: Knowledge Enhancement in the Life Sciences” in 2009, and he was awarded the Lundbeck Foundation Prize for Young Scientists in 2010.

Possible conflicts of interest

Lars Juhl Jensen is member of the Board of Experts at Intomics A/S.

Selected publications

1. Published

   STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

   Szklarczyk, D., Gable, A. L., Lyon, D., Junge, A., Wyder, S., Huerta-Cepas, J., Simonovic, M., Doncheva, Nadezhda Tsankova, Morris, J. H., Bork, P., Jensen, Lars Juhl & von Mering, C., 2019, In: Nucleic Acids Research. 47, D1, p. D607-D613 7 p.

   Research output: Contribution to journal › Journal article › Research › peer-review

2. Published

   SnapShot: S-Phase Entry and Exit

   Burgess, A., Vuong, J., Marzec, K. A., de Lichtenberg, U. N., O'Donoghue, S. I. & Jensen, Lars Juhl, 2019, In: Cell. 179, 3, p. 802-802.e1 2 p.

   Research output: Contribution to journal › Comment/debate › Research › peer-review

3. Published

   A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

   Westergaard, D., Stærfeldt, H., Tønsberg, C., Jensen, Lars Juhl & Brunak, Søren, 2018, In: PLoS Computational Biology. 14, 2, 16 p., e1005962.

   Research output: Contribution to journal › Journal article › Research › peer-review

4. Published

   The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

   Szklarczyk, D., Morris, J. H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos Delgado, A., Doncheva, Nadezhda Tsankova, Roth, A., Bork, P., Jensen, Lars Juhl & von Mering, C., Jan 2017, In: Nucleic Acids Research. 45, D1, p. D362-D368

   Research output: Contribution to journal › Journal article › Research › peer-review

5. Published

   EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

   Pafilis, E., Buttigieg, P. L., Ferrell, B., Pereira, E., Schnetzer, J., Arvanitidis, C. & Jensen, Lars Juhl, 2016, In: Database: The Journal of Biological Databases and Curation. 2016, 7 p., baw005.

   Research output: Contribution to journal › Journal article › Research › peer-review

6. Published

   Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

   Schölz, C., Lyon, D., Refsgaard, J. C., Jensen, Lars Juhl, Choudhary, Chunaram & Weinert, B. T., Nov 2015, In: Nature Methods. 12, p. 1003-4 2 p.

   Research output: Contribution to journal › Comment/debate › Research › peer-review

7. Published

   DISEASES: Text mining and data integration of disease-gene associations

   Pletscher-Frankild, S., Pallejà, A., Tsafou, K., Binder, J. X. & Jensen, Lars Juhl, Mar 2015, In: Methods. 74, p. 83-9 7 p.

   Research output: Contribution to journal › Journal article › Research › peer-review

8. Published

   COMPARTMENTS: unification and visualization of protein subcellular localization evidence

   Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R. & Jensen, Lars Juhl, 2014, In: Database: The Journal of Biological Databases and Curation. 2014, 9 p., bau012.

   Research output: Contribution to journal › Journal article › Research › peer-review

9. Published

   Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

   Jensen, A. B., Moseley, P. L., Oprea, T. I., Ellesøe, S. G., Eriksson, R., Schmock, H., Jensen, P. B., Jensen, Lars Juhl & Brunak, Søren, 24 Jun 2014, In: Nature Communications. 5, 10 p., 4022.

   Research output: Contribution to journal › Journal article › Research › peer-review