Simon Rasmussen

Simon Rasmussen

Associate professor, group leader, Associate Professor

Member of:

    ORCID: 0000-0001-6323-9041

    Publication year:
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    1. 2017

    2. Gene expression plasticity across hosts of an invasive scale insect species

      Christodoulides, N., Van Dam, A. R., Peterson, D. A., Frandsen, R. J. N., Mortensen, U. H., Petersen, Bent, Rasmussen, Simon, Normark, B. B. & Hardy, N. B., 2017, In: PLoS ONE. 12, 5

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Genome sequence of Talaromyces atroroseus, which produces red colorants for the food industry

      Thrane, U., Rasmussen, K. B., Petersen, Bent, Rasmussen, Simon, Sicheritz-Pontén, Thomas & Mortensen, U. H., 2017, In: Genome Announcements. 5, 9, 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

      Sørensen, L. M., Jensen, J. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., van Beusekom, J., Espeseth, T., Flindt, E., Friborg, R. M., Halager, A. E., Le Hellard, S., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Mailund, T., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, David, Yadav, R., Li, N., Xu, X., Hansen, Torben, Krogh, Anders, Bolund, L., Sørensen, T. I. A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Besenbacher, S., Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., 2017, In: Nature. 548, 7665, p. 87-91 5 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    5. 2016

    6. Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp

      Palomo, A., Jane Fowler, S., Gülay, A., Rasmussen, Simon, Sicheritz-Ponten, T. & Smets, B. F., Nov 2016, In: I S M E Journal. 10, 11, p. 2569-2581 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci

      Rasmussen, L. H., Dargis, R., Højholt, K., Christensen, J. J., Skovgaard, O., Justesen, U. S., Rosenvinge, F. S., Moser, Claus Ernst, Lukjancenko, O., Rasmussen, Simon & Nielsen, X. C., Oct 2016, In: European Journal of Clinical Microbiology & Infectious Diseases. 35, 10, p. 1615-1625

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes

      Degli Esposti, M., Cortez, D., Lozano, L., Rasmussen, Simon, Nielsen, H. B. & Martinez Romero, E., 30 Jul 2016, In: Biology Direct. 11, p. 34

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      A genomic history of aboriginal Australia

      Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, Simon, Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, Anders, Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, Ashot, Moltke, Ida, Pugach, I., Korneliussen, Thorfinn Sand, Levkivskyi, I. P., Moreno Mayar, J. Víctor, Ni, S., Racimo, F., Sikora, Martin, Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, Søren, Campos, P., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, Rasmus, Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, Eske, 2016, In: Nature. 538, 7624, p. 207-214 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data

      Nielsen, L. J., Stuart, P., Picmanova, M., Rasmussen, Simon, Olsen, C. E., Harholt, J., Møller, Birger Lindberg & Bjarnholt, Nanna, 2016, In: BMC Genomics. 17, 24 p., 1021.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. 2015

    12. Reads2Type: a web application for rapid microbial taxonomy identification

      Saputra, D., Rasmussen, Simon, Larsen, M. V., Haddad, N., Sperotto, M. M., Aarestrup, F. M., Lund, O. & Sicheritz-Pontén, T., 25 Nov 2015, In: BMC Bioinformatics. 16, 398.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

      Nordahl Petersen, T., Rasmussen, Simon, Hasman, H., Carøe, C., Bælum, J., Schultz, A. C., Bergmark, L., Svendsen, C. A., Lund, O., Sicheritz-Pontén, T. & Aarestrup, F. M., 10 Jul 2015, In: Scientific Reports. 5, p. 11444

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 204201681