Simon Rasmussen

Simon Rasmussen

Associate professor, group leader, Professor


  1. 2018
  2. Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

    Shukla, N., Yadav, R., Kaur, P., Rasmussen, Simon, Goel, S., Agarwal, M., Jagannath, A., Gupta, R. & Kumar, A., 2018, In: Molecular Plant Pathology. 19, 3, p. 615-633 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. 2017
  4. Published

    Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

    Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A. & 7 others, Foley, R., Meltzer, D. J., Nielsen, Rasmus, Excoffler, L., Lahr, M. M., Orlando, L. A. A. & Willerslev, Eske, 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    Genomic characterization, phylogenetic analysis, and identification of virulence factors in Aerococcus sanguinicola and Aerococcus urinae strains isolated from infection episodes

    Carkaci, D., Højholt, K., Nielsen, X. C., Dargis, R., Rasmussen, Simon, Skovgaard, O., Fuursted, K., Andersen, P. S., Stegger, M. & Christensen, J. J., Nov 2017, In: Microbial Pathogenesis. 112, p. 327-340 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    In silico assessment of virulence factors in strains of streptococcus oralis and Streptococcus mitis isolated from patients with infective endocarditis

    Rasmussen, L. H., Højholt, K., Dargis, R., Christensen, J. J., Skovgaard, O., Justesen, U. S., Rosenvinge, F. S., Moser, Claus Ernst, Lukjancenko, O., Rasmussen, Simon & Nielsen, X. C., 1 Sep 2017, In: Journal of Medical Microbiology. 66, p. 1316-1323 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Assembly and analysis of 100 full MHC haplotypes from the Danish population

    Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, Torben, Bolund, L., Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe: [incl. Corrigendum]

    Kristiansen, K., Allentoft, Morten Erik, Frei, K. M., Iversen, Rune, Johannsen, N. N., Kroonen, Guus, Pospieszny, L., Price, T. D., Rasmussen, Simon, Sjögren, K., Sikora, Martin & Willerslev, Eske, Apr 2017, In: Antiquity. 91, 356, p. 334-347

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

    Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834

    Research output: Contribution to journalJournal articlepeer-review

  10. Gene expression plasticity across hosts of an invasive scale insect species

    Christodoulides, N., Van Dam, A. R., Peterson, D. A., Frandsen, R. J. N., Mortensen, U. H., Petersen, Bent, Rasmussen, Simon, Normark, B. B. & Hardy, N. B., 2017, In: PLoS ONE. 12, 5

    Research output: Contribution to journalJournal articlepeer-review

  11. Genome sequence of Talaromyces atroroseus, which produces red colorants for the food industry

    Thrane, U., Rasmussen, K. B., Petersen, Bent, Rasmussen, Simon, Sicheritz-Pontén, Thomas & Mortensen, U. H., 2017, In: Genome Announcements. 5, 9, 2 p.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

    Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X. & 39 others, Sun, J., Cao, H., Ye, C., van Beusekom, J., Espeseth, T., Flindt, E., Friborg, R. M., Halager, A. E., Le Hellard, S., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Mailund, T., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, David, Yadav, R., Li, N., Xu, X., Hansen, Torben, Krogh, Anders, Bolund, L., Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Besenbacher, S., Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., 2017, In: Nature. 548, 7665, p. 87-91 5 p.

    Research output: Contribution to journalLetterpeer-review

ID: 204201681