Mikaela Koutrouli

Mikaela Koutrouli

PhD fellow

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    1 - 6 out of 6Page size: 25
    1. 2024
    2. Published

      FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data

      Koutrouli, Mikaela, Nastou, Katerina, Piera Líndez, Pau, Bouwmeester, R., Rasmussen, Simon, Martens, L. & Jensen, Lars Juhl, 2024, In: Bioinformatics. 40, 2, 11 p., btae010.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. 2023
    4. Published

      The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

      Szklarczyk, D., Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, F., Hachilif, R., Gable, A. L., Fang, T., Doncheva, Nadezhda Tsankova, Pyysalo, S., Bork, P., Jensen, Lars Juhl & von Mering, C., 2023, In: Nucleic Acids Research. 51, D1, p. D638-D646 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      The scverse project provides a computational ecosystem for single-cell omics data analysis

      Virshup, I., Bredikhin, D., Heumos, L., Palla, G., Sturm, G., Gayoso, A., Kats, I., Koutrouli, M., Angerer, P., Bergen, V., Boyeau, P., Büttner, M., Eraslan, G., Fischer, D., Frank, M., Hong, J., Klein, M., Lange, M., Lopez, R., Lotfollahi, M. & 18 others, Luecken, M. D., Ramirez, F., Regier, J., Rybakov, S., Schaar, A. C., Valiollah Pour Amiri, V., Weiler, P., Xing, G., Berger, B., Pe’er, D., Regev, A., Teichmann, S. A., Finotello, F., Wolf, F. A., Yosef, N., Stegle, O., Theis, F. J. & Scverse Community, S. C., 2023, In: Nature Biotechnology. 41, p. 604-606

      Research output: Contribution to journal › Letter › Research › peer-review

    6. 2022
    7. Published

      The network makeup artist (NORMA-2.0): distinguishing annotated groups in a network using innovative layout strategies

      Karatzas, E., Koutrouli, Mikaela, Baltoumas, F. A., Papanikolopoulou, K., Bouyioukos, C. & Pavlopoulos, G. A., 2022, In: Bioinformatics Advances. 2, 1, vbac036.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      U-CIE [/juː ‘siː/]: Color encoding of high-dimensional data

      Koutrouli, Mikaela, Morris, J. H. & Jensen, Lars Juhl, 2022, In: Protein Science. 31, 9, 8 p., e4388.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. 2021
    10. Published

      Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review

      Baltoumas, F. A., Zafeiropoulou, S., Karatzas, E., Koutrouli, Mikaela, Thanati, F., Voutsadaki, K., Gkonta, M., Hotova, J., Kasionis, I., Hatzis, P. & Pavlopoulos, G. A., 2021, In: Biomolecules. 11, 8, 41 p., 1245.

      Research output: Contribution to journal › Review › Research › peer-review

    ID: 247674076