Lars Juhl Jensen

Lars Juhl Jensen

Professor, Group Leader, Professor

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    ORCID: 0000-0001-7885-715X

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    1. Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

      Jensen, Lars Juhl & Knudsen, S., 2000, In: Bioinformatics. 16, 4, p. 326-33 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

      Schölz, C., Lyon, D., Refsgaard, J. C., Jensen, Lars Juhl, Choudhary, Chunaram & Weinert, B. T., Nov 2015, In: Nature Methods. 12, p. 1003-4 2 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    3. Published

      BioStar: an online question & answer resource for the bioinformatics community

      Parnell, L. D., Lindenbaum, P., Shameer, K., Dall'Olio, G. M., Swan, D. C., Jensen, Lars Juhl, Cockell, S. J., Pedersen, B. S., Mangan, M. E., Miller, C. A. & Albert, I., 2011, In: P L o S Computational Biology (Online). 7, 10, p. e1002216

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Biochemistry. Not comparable, but complementary

      Jensen, Lars Juhl & Bork, P., 3 Oct 2008, In: Science (New York, N.Y.). 322, 5898, p. 56-7 2 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    5. Published

      COMPARTMENTS: unification and visualization of protein subcellular localization evidence

      Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R. & Jensen, Lars Juhl, 2014, In: Database: The Journal of Biological Databases and Curation. 2014, 9 p., bau012.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

      Csikász-Nagy, A., Kapuy, O., Tóth, A., Pál, C., Jensen, Lars Juhl, Uhlmann, F., Tyson, J. J. & Novák, B., 2009, In: Molecular Systems Biology. 5, p. 236

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Circular reasoning rather than cyclic expression

      Jensen, Lars Juhl, de Lichtenberg, U., Jensen, T. S., Brunak, Søren & Bork, P., 2008, In: Genome Biology. 9, 6, p. 403

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Co-evolution of transcriptional and post-translational cell-cycle regulation

      Jensen, Lars Juhl, Jensen, T. S., de Lichtenberg, U., Brunak, S. & Bork, P., 2006, In: Nature Study. 443, 7111, p. 594-7 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision

      Junge, A. & Jensen, Lars Juhl, 2019, In: Bioinformatics. 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Comparative genomics of four Pseudomonas species

      Jensen, Lars Juhl, Skovgaard, M., Sicheritz-Ponten, T., Hansen, N. T., Johansen, H., Jørgensen, M. K., Kiil, K. & Ussery, D. W., 2004, The Phedomonads. p. 139-164

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

    11. Published

      Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization

      Locard-Paulet, Marie, Bouyssié, D., Froment, C., Burlet-Schiltz, O. & Jensen, Lars Juhl, 2020, In: Journal of Proteome Research. 19, 3, p. 1338-1345 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Comparison of computational methods for the identification of cell cycle-regulated genes

      de Lichtenberg, U., Jensen, Lars Juhl, Fausbøll, A., Jensen, T. S., Bork, P. & Brunak, S., 2005, In: Bioinformatics. 21, 7, p. 1164-71 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Comprehensive comparison of large-scale tissue expression datasets

      Santos Delgado, A., Tsafou, K., Stolte, C., Pletscher-Frankild, S., O'Donoghue, S. I. & Jensen, Lars Juhl, 2015, In: PeerJ. 3, e1054.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes

      Poulsen, J. W., Madsen, C. T., Young, C., Kelstrup, C. D., Grell, H. C., Henriksen, P., Jensen, Lars Juhl & Nielsen, Michael Lund, 2012, In: Journal of Proteomics. 75, 13, p. 3886-97 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis

      Yarani, R., Palasca, Oana, Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Svane, C. A. S., Mirza, A. H., Litman, Thomas, Holmskov, U., Bang-Berthelsen, C. H., Vilien, M., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2023, In: Frontiers in Molecular Biosciences. 9, 1081176.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Crystal ball. Systems biology: in the broadest sense of the word

      Ussery, D., de Lichtenberg, U. & Jensen, Lars Juhl, 2005, In: Environmental Microbiology. 7, 4, p. 482-3 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

      Santos Delgado, A., Wernersson, R. & Jensen, Lars Juhl, Jan 2015, In: Nucleic Acids Research. 43, D1, p. D1140-4 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments

      Gauthier, N. P., Larsen, M. E., Wernersson, R., de Lichtenberg, U., Jensen, Lars Juhl, Brunak, S. & Jensen, T. S., 2008, In: Nucleic Acids Research. 36, Database issue, p. D854-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

      Gauthier, N. P., Jensen, Lars Juhl, Wernersson, R., Brunak, Søren & Jensen, T. S., 2010, In: Nucleic Acids Research. 38, Database issue, p. D699-702

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Cytoscape stringApp: Network analysis and visualization of proteomics data

      Doncheva, Nadezhda Tsankova, Morris, J., Gorodkin, Jan & Jensen, Lars Juhl, 2019, In: Journal of Proteome Research. 18, 2, p. 623-632

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks

      Doncheva, Nadezhda Tsankova, Morris, J. H., Holze, H., Kirsch, Rebecca, Nastou, Katerina, Cuesta-Astroz, Y., Rattei, T., Szklarczyk, D., Von Mering, C. & Jensen, Lars Juhl, 2022, In: Journal of Proteome Research. 22, 2, p. 637-646

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      DISEASES: Text mining and data integration of disease-gene associations

      Pletscher-Frankild, S., Pallejà, A., Tsafou, K., Binder, J. X. & Jensen, Lars Juhl, Mar 2015, In: Methods. 74, p. 83-9 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000

      Sinha, S., Eisenhaber, B., Jensen, Lars Juhl, Kalbuaji, B. & Eisenhaber, F., 2018, In: Proteomics. 18, 21-22, p. 1-13 e1800093.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Design, implementation, and operation of a rapid, robust named entity recognition web service

      Pletscher-Frankild, S. & Jensen, Lars Juhl, 2019, In: Journal of Cheminformatics. 11, 6 p., 19.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

      Eriksson, R., Jensen, P. B., Pletscher-Frankild, S., Jensen, Lars Juhl & Brunak, Søren, 23 May 2013, In: JAMIA - Journal of the American Medical Informatics Association. 20, 5, p. 947-953 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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