Lars Juhl Jensen

Lars Juhl Jensen

Professor, Group Leader, Professor

Member of:

    ORCID: 0000-0001-7885-715X

    Publication year:
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    51 - 100 out of 237Page size: 50
    1. 2008

    2. NetworKIN: a resource for exploring cellular phosphorylation networks

      Linding, R., Jensen, Lars Juhl, Pasculescu, A., Olhovsky, M., Colwill, K., Bork, P., Yaffe, M. B. & Pawson, T., 2008, In: Nucleic Acids Research. 36, Database issue, p. D695-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Predicting biological networks from genomic data

      Harrington, E. D., Jensen, Lars Juhl & Bork, P., 2008, In: F E B S Letters. 582, 8, p. 1251-8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. STITCH: interaction networks of chemicals and proteins

      Kuhn, M., von Mering, C., Campillos, M., Jensen, Lars Juhl & Bork, P., 2008, In: Nucleic Acids Research. 36, Database issue, p. D684-8

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      STRING 8--a global view on proteins and their functional interactions in 630 organisms

      Jensen, Lars Juhl, Kuhn, M., Stark, M., Chaffron, S., Creevey, C., Muller, J., Doerks, T., Julien, P., Roth, A., Simonovic, M., Bork, P. & von Mering, C., 2008, In: Nucleic Acids Research. 37, suppl 1, p. D412-D416 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. SuperTarget and Matador: resources for exploring drug-target relationships

      Günther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, Lars Juhl, Schneider, R., Skoblo, R., Russell, R. B., Bourne, P. E., Bork, P. & Preissner, R., 2008, In: Nucleic Acids Research. 36, Database issue, p. D919-22

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Text mining for biology--the way forward: opinions from leading scientists

      Altman, R. B., Bergman, C. M., Blake, J., Blaschke, C., Cohen, A., Gannon, F., Grivell, L., Hahn, U., Hersh, W., Hirschman, L., Jensen, Lars Juhl, Krallinger, M., Mons, B., O'Donoghue, S. I., Peitsch, M. C., Rebholz-Schuhmann, D., Shatkay, H. & Valencia, A., 2008, In: Genome Biology (Online Edition). 9 Suppl 2, p. S7

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. eggNOG: automated construction and annotation of orthologous groups of genes

      Jensen, Lars Juhl, Julien, P., Kuhn, M., von Mering, C., Muller, J., Doerks, T. & Bork, P., 2008, In: Nucleic Acids Research. 36, Database issue, p. D250-4

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Biochemistry. Not comparable, but complementary

      Jensen, Lars Juhl & Bork, P., 3 Oct 2008, In: Science (New York, N.Y.). 322, 5898, p. 56-7 2 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    10. 2009
    11. Published

      Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

      Csikász-Nagy, A., Kapuy, O., Tóth, A., Pál, C., Jensen, Lars Juhl, Uhlmann, F., Tyson, J. J. & Novák, B., 2009, In: Molecular Systems Biology. 5, p. 236

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Homologous and non-homologous sequence methods for assigning protein function

      Yeats, C., orengo, C., Veuthey, A. L., Boeckmann, B., Jensen, Lars Juhl, Valencia, A., Rausell, A. & Bork, P., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 213-238

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    13. Published

      Microblogging the ISMB: a new approach to conference reporting

      Saunders, N., Beltrão, P., Jurczak, D., Krause, R., Kuhn, M., Wu, S. & Jensen, Lars Juhl, 2009, In: PLoS Computational Biology. 5, 1, p. e1000263

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Protein-protein interactions: analysis and prediction

      Frishman, D., Albert, M., Blankenburg, H., Bork, P., Harrington, E. D., Hermjakob, H., Jensen, Lars Juhl, Juan, D. A., Pagel, P., Schachter, V. & Valencia, A., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 353-410 (Modern Genome Annotation: The BioSapiens network).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

    15. Published

      Quantifying environmental adaptation of metabolic pathways in metagenomics

      Gianoulis, T. A., Raes, J., Patel, P. V., Bjornson, R., Korbel, J. O., Letunic, I., Yamada, T., Paccanaro, A., Snyder, M., Bork, P., Gerstein, M. B. & Jensen, Lars Juhl, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 5, p. 1374-9 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Reflect: augmented browsing for the life scientist

      Pafilis, E., O'Donoghue, S. I., Jensen, Lars Juhl, Horn, H., Kuhn, M., Brown, N. P. & Schneider, R., 2009, In: Nature Biotechnology. 27, 6, p. 508-10 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Sequence-based feature prediction and annotation of proteins

      Juncker, A., Jensen, Lars Juhl, Pierleoni, A., Bernsel, A., Tress, M. L., Bork, P., von Heijne, G., Valencia, A., Ouzounis, C. A., Casadio, R. & Brunak, S., 2009, In: Genome Biology (Online Edition). 10, 2, p. 206

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. 2010

    19. A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae

      Gallego, O., Betts, M. J., Gvozdenovic-Jeremic, J., Maeda, K., Matetzki, C., Aguilar-Gurrieri, C., Beltran-Alvarez, P., Bonn, S., Fernández-Tornero, C., Jensen, Lars Juhl, Kuhn, M., Trott, J., Rybin, V., Müller, C. W., Bork, P., Kaksonen, M., Russell, R. B. & Gavin, A., 2010, In: Molecular Systems Biology. 6, p. 430

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

      Gauthier, N. P., Jensen, Lars Juhl, Wernersson, R., Brunak, Søren & Jensen, T. S., 2010, In: Nucleic Acids Research. 38, Database issue, p. D699-702

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Martini: using literature keywords to compare gene sets

      Soldatos, T. G., O'Donoghue, S. I., Satagopam, V. P., Jensen, Lars Juhl, Brown, N. P., Barbosa-Silva, A. & Schneider, R., 2010, In: Nucleic Acids Research. 38, 1, p. 26-38 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

      Olsen, Jesper Velgaard, Vermeulen, M., Santamaria, A., Kumar, C., Miller, M. L., Jensen, Lars Juhl, Gnad, F., Cox, J., Jensen, T. S., Nigg, E. A., Brunak, Søren & Mann, Matthias, 2010, In: Science Signaling. 3, 104, p. ra3 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      STITCH 2: an interaction network database for small molecules and proteins

      Kuhn, M., Szklarczyk, D., Franceschini, A., Campillos, M., von Mering, C., Jensen, Lars Juhl, Beyer, A. & Bork, P., 2010, In: Nucleic Acids Research. 38, Database issue, p. D552-6

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      A side effect resource to capture phenotypic effects of drugs

      Kuhn, M., Campillos, M., Letunic, I., Jensen, Lars Juhl & Bork, P., 1 Jan 2010, In: Molecular Systems Biology. 6, p. 343

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Drug-induced regulation of target expression

      Iskar, M., Campillos, M., Kuhn, M., Jensen, Lars Juhl, van Noort, V. & Bork, P., 1 Jan 2010, In: PLoS Computational Biology. 6, 9

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      High-resolution transcription atlas of the mitotic cell cycle in budding yeast

      Granovskaia, M. V., Jensen, Lars Juhl, Ritchie, M. E., Toedling, J., Ning, Y., Bork, P., Huber, W. & Steinmetz, L. M., 1 Jan 2010, In: Genome Biology (Online Edition). 11, 3, p. R24

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

      Muller, J., Szklarczyk, D., Julien, P., Letunic, I., Roth, A., Kuhn, M., Powell, S., von Mering, C., Doerks, T., Jensen, Lars Juhl & Bork, P., 1 Jan 2010, In: Nucleic Acids Symposium Series. 38, Database issue, p. D190-5

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Evolution and regulation of cellular periodic processes: a role for paralogues

      Trachana, K., Jensen, Lars Juhl & Bork, P., 1 Mar 2010, In: E M B O Reports. 11, 3, p. 233-8 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Suppression of water as a nucleophile in Candida antarctica lipase B catalysis

      Larsen, M. W., Zielinska, D. F., Martinelle, M., Hidalgo, A., Jensen, Lars Juhl, Bornscheuer, U. T. & Hult, K., 12 Apr 2010, In: ChemBioChem. 11, 6, p. 796-801 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Ontologies in quantitative biology: a basis for comparison, integration, and discovery

      Jensen, Lars Juhl & Bork, P., 1 May 2010, In: PLoS Biology. 8, 5, p. e1000374

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      Protein annotation in the era of personal genomics

      Blicher, T., Gupta, R., Wesolowska, A., Jensen, Lars Juhl & Brunak, Søren, 1 Jun 2010, In: Current Opinion in Structural Biology. 20, 3, p. 335-41 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Published

      Reflect: a practical approach to web semantics

      O'Donoghue, S. I., Horn, H., Pafilisa, E., Haag, S., Kuhn, M., Satagopam, V. P., Schneider, R. & Jensen, Lars Juhl, Jul 2010, In: Journal of Web Semantics. 8, 2-3, p. 182-189

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. 2011
    34. Published

      BioStar: an online question & answer resource for the bioinformatics community

      Parnell, L. D., Lindenbaum, P., Shameer, K., Dall'Olio, G. M., Swan, D. C., Jensen, Lars Juhl, Cockell, S. J., Pedersen, B. S., Mangan, M. E., Miller, C. A. & Albert, I., 2011, In: P L o S Computational Biology (Online). 7, 10, p. e1002216

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington

      Waters, M. R., Stafford jr., T., McDonald, H. G., Gustafson, C., Rasmussen, M., Cappellini, Enrico, Olsen, Jesper Velgaard, Szklarczyk, D. M., Jensen, Lars Juhl, Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Science. 334, 6054, p. 351-353 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation

      Weinert, B. T., Wagner, S. A., Horn, H., Henriksen, P., Liu, W. R., Olsen, Jesper Velgaard, Jensen, Lars Juhl & Choudhary, Chunaram, 2011, In: Science Signaling. 4, 183, p. ra48

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Specific CLK inhibitors from a novel chemotype for regulation of alternative splicing

      Fedorov, O., Huber, K., Eisenreich, A., Filippakopoulos, P., King, O., Bullock, A. N., Szklarczyk, D., Jensen, Lars Juhl, Fabbro, D., Trappe, J., Rauch, U., Bracher, F. & Knapp, S., 2011, In: Chemistry & Biology. 18, 1, p. 67-76 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

      Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, Lars Juhl & von Mering, C., 2011, In: Nucleic Acids Research. 39, Database issue, p. D561-8

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      The rise and fall of supervised machine learning techniques

      Jensen, Lars Juhl & Bateman, A., 2011, In: Bioinformatics (Online). 27, 24, p. 3331-2 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

      Raes, J., Letunic, I., Yamada, T., Jensen, Lars Juhl & Bork, P., 2011, In: Molecular Systems Biology. 7, p. 473

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      Using electronic patient records to discover disease correlations and stratify patient cohorts

      Roque, F. S., Jensen, P. B., Schmock, H., Dalgaard, M., Andreatta, M., Hansen, T., Søeby, K., Bredkjær, S., Juul, Anders, Werge, Thomas, Jensen, Lars Juhl & Brunak, Søren, 2011, In: P L o S Computational Biology. 7, 8, p. e1002141 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      Phospho.ELM: a database of phosphorylation sites--update 2011

      Dinkel, H., Chica, C., Via, A., Gould, C. M., Jensen, Lars Juhl, Gibson, T. J. & Diella, F., 1 Jan 2011, In: Nucleic Acids Symposium Series. 39, Database issue, p. D261-7

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level

      Danielsen, J. M. R., Sylvestersen, K. B., Bekker-Jensen, Simon Holst, Szklarczyk, D., Poulsen, J. W., Horn, H., Jensen, Lars Juhl, Mailand, Niels & Nielsen, Michael Lund, 1 Mar 2011, In: Molecular and Cellular Proteomics. 10, 3, p. M110.003590

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Ten simple rules for getting help from online scientific communities

      Dall'olio, G. M., Marino, J., Schubert, M., Keys, K. L., Stefan, M. I., Gillespie, C. S., Poulain, P., Shameer, K., Sugar, R., Invergo, B. M., Jensen, Lars Juhl, Bertranpetit, J. & Laayouni, H., 1 Sep 2011, In: P L o S Computational Biology. 7, 9, p. e1002202

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. 2012
    46. Published

      Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes

      Poulsen, J. W., Madsen, C. T., Young, C., Kelstrup, C. D., Grell, H. C., Henriksen, P., Jensen, Lars Juhl & Nielsen, Michael Lund, 2012, In: Journal of Proteomics. 75, 13, p. 3886-97 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      DistiLD Database: diseases and traits in linkage disequilibrium blocks

      Palleja, A., Horn, H., Eliasson, S. & Jensen, Lars Juhl, 2012, In: Nucleic Acids Research. 40, Database issue, p. D1036-40

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

      Frenkel-Morgenstern, M., Danon, T., Christian, T., Igarashi, T., Cohen, L., Hou, Y. & Jensen, Lars Juhl, 2012, In: Molecular Systems Biology. 8, p. 572

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Identification of novel type 1 diabetes candidate genes by integrating genome-wide association data, protein-protein interactions, and human pancreatic islet gene expression

      Bergholdt, R., Brorsson, C., Palleja, A., Berchtold, L. A., Fløyel, T., Bang-Berthelsen, C. H., Frederiksen, K. S., Jensen, Lars Juhl, Størling, J. & Pociot, F., 2012, In: Diabetes. 61, 4, p. 954-62 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Mining electronic health records: towards better research applications and clinical care

      Jensen, P. B., Jensen, Lars Juhl & Brunak, Søren, 2012, In: Nature Reviews. Genetics. 13, 6, p. 395-405 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Published

      Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

      Croft, L. J., Szklarczyk, D., Jensen, Lars Juhl & Gorodkin, Jan, 2012, In: B M C Systems Biology. 6, 1, p. 90

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Published

      Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins

      Cappellini, Enrico, Jensen, Lars Juhl, Szklarczyk, D. M., Ginolhac, A., Rodrigues da Fonseca, Rute Andreia, Stafford jr., T., Holen, S. R., Collins, M. J., Orlando, L. A. A., Willerslev, Eske, Gilbert, M Thomas P & Olsen, Jesper Velgaard, 2012, In: Journal of Proteome Research. 11, 2, p. 917-926 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      STITCH 3: zooming in on protein-chemical interactions

      Kuhn, M., Szklarczyk, D., Franceschini, A., von Mering, C., Jensen, Lars Juhl & Bork, P., 2012, In: Nucleic Acids Research. 40, Database issue, p. D876-80

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Three views of microbial genomes

      Jensen, Lars Juhl, Friis, C. & Ussery, D., 2012, In: Research in Microbiology. 150, 9-10, p. 773-7 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. Published

      Transcriptional regulation is a major controller of cell cycle transition dynamics

      Romanel, A., Jensen, Lars Juhl, Cardelli, L. & Csikász-Nagy, A., 2012, In: P L o S One. 7, 1, p. e29716

      Research output: Contribution to journal › Journal article › Research › peer-review

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