The NNF Center for Protein Research

  1. 2019
  2. Published

    What outcomes are important to patients with mild cognitive impairment or Alzheimer's disease, their caregivers, and health-care professionals? A systematic review. / ROADMAP consortium.

    In: Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring, Vol. 11, 12.2019, p. 231-247.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Herpes Simplex Virus Type 1 infection is associated with suicidal behavior and first registered psychiatric diagnosis in a healthy population. / Nissen, Janna; Trabjerg, Betina; Pedersen, M G; Banasik, Karina; Pedersen, Ole Birger; Sørensen, Erik; Nielsen, Kaspar René; Erikstrup, Christian; Petersen, Mikkel Steen; Paarup, Helene Martina; Bruun-Rasmussen, Peter; Westergaard, David; Hansen, T F; Pedersen, Carsten B; Werge, Thomas; Torrey, Fuller; Hjalgrim, Henrik; Mortensen, Preben Bo; Yolken, Robert; Brunak, Søren; Ullum, Henrik; Burgdorf, K S.

    In: Psychoneuroendocrinology, Vol. 108, 10.2019, p. 150-154.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Selective autophagy maintains centrosome integrity and accurate mitosis by turnover of centriolar satellites. / Holdgaard, Søs Grønbæk; Cianfanelli, Valentina; Pupo, Emanuela; Lambrughi, Matteo; Lubas, Michal; Nielsen, Julie C; Eibes, Susana; Maiani, Emiliano; Harder, Lea M; Wesch, Nicole; Foged, Mads Møller; Maeda, Kenji; Nazio, Francesca; de la Ballina, Laura R; Dötsch, Volker; Brech, Andreas; Frankel, Lisa B; Jäättelä, Marja; Locatelli, Franco; Barisic, Marin; Andersen, Jens S; Bekker-Jensen, Simon; Lund, Anders H; Rogov, Vladimir V; Papaleo, Elena; Lanzetti, Letizia; De Zio, Daniela; Cecconi, Francesco.

    In: Nature Communications, Vol. 10, No. 1, 13.09.2019, p. 4176.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny. / Cappellini, Enrico; Welker, Frido; Pandolfi, Luca; Ramos-madrigal, Jazmín; Samodova, Diana; Rüther, Patrick L.; Fotakis, Anna K.; Lyon, David; Moreno-mayar, J. Víctor; Bukhsianidze, Maia; Rakownikow Jersie-christensen, Rosa; Mackie, Meaghan; Ginolhac, Aurélien; Ferring, Reid; Tappen, Martha; Palkopoulou, Eleftheria; Dickinson, Marc R.; Stafford, Thomas W.; Chan, Yvonne L.; Götherström, Anders; Nathan, Senthilvel K. S. S.; Heintzman, Peter D.; Kapp, Joshua D.; Kirillova, Irina; Moodley, Yoshan; Agusti, Jordi; Kahlke, Ralf-dietrich; Kiladze, Gocha; Martínez-navarro, Bienvenido; Liu, Shanlin; Sandoval Velasco, Marcela; Sinding, Mikkel-holger S.; Kelstrup, Christian D.; Allentoft, Morten E.; Orlando, Ludovic; Penkman, Kirsty; Shapiro, Beth; Rook, Lorenzo; Dalén, Love; Gilbert, M. Thomas P.; Olsen, Jesper V.; Lordkipanidze, David; Willerslev, Eske.

    In: Nature, 11.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Paracrine Crosstalk between Intestinal L- and D-cells Controls Secretion of Glucagon-Like Peptide-1 in mice. / Jepsen, Sara L; Grunddal, Kaare V; Wewer Albrechtsen, Nicolai J; Engelstoft, Maja S; Gabe, Maria B N; Jensen, Elisa P; Ørskov, Cathrine; Poulsen, Steen S; Rosenkilde, Mette M; Pedersen, Jens; Gribble, Fiona M; Reimann, Frank; Deacon, Carolyn F; Schwartz, Thue W; Christ, Andreas D; Martin, Rainer E; Holst, Jens J.

    In: A J P: Endocrinology and Metabolism (Online), 10.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog. / Tsutaya, Takumi; Mackie, Meaghan; Koenig, Claire; Sato, Takao; Weber, Andrzej W.; Kato, Hirofumi; Olsen, Jesper V.; Cappellini, Enrico.

    In: Scientific Reports, Vol. 9, No. 1, 12841, 06.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration. / IMI-DIRECT consortium.

    In: Journal of Hepatology, Vol. 71, No. 3, 01.09.2019, p. 594-602.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Incorporating symptom data in longitudinal disease trajectories for more detailed patient stratification. / Lademann, Martin; Lademann, Mette; Boeck Jensen, Anders; Brunak, Søren.

    In: International Journal of Medical Informatics, Vol. 129, 09.2019, p. 107-113.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. E-pub ahead of print

    Leveraging European infrastructures to access 1 million human genomes by 2022. / Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Béroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Søren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M; Korbel, Jan O; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyrönen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena.

    In: Nature Reviews. Genetics, 27.08.2019.

    Research output: Contribution to journalReviewResearchpeer-review

  11. E-pub ahead of print

    Transcriptome analysis in patients with temporal lobe epilepsy. / Kjær, Christina; Barzaghi, Guido; Bak, Lasse K; Goetze, Jens P; Yde, Christina Westmose; Woldbye, David; Pinborg, Lars H; Jensen, Lars Juhl.

    In: Brain, 26.08.2019.

    Research output: Contribution to journalLetterResearchpeer-review

  12. Published

    Distinct signatures of lung cancer types : aberrant mucin O-glycosylation and compromised immune response. / Lucchetta, Marta; da Piedade, Isabelle; Mounir, Mohamed; Vabistsevits, Marina; Terkelsen, Thilde; Papaleo, Elena.

    In: BMC Cancer, Vol. 19, No. 1, 20.08.2019, p. 824.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. E-pub ahead of print

    A Comparative Assessment Study of Known Small-Molecule Keap1-Nrf2 Protein-Protein Interaction Inhibitors : Chemical Synthesis, Binding Properties, and Cellular Activity. / Tran, Kim Tai; Pallesen, Jakob S; Solbak, Sara Marie Øie; Narayanan, Dilip; Baig, Amina; Zang, Jie; Aguayo-Orozco, Alejandro; Carmona, Rosa; Garcia, Anthony; Bach, Anders.

    In: Journal of Medicinal Chemistry, 14.08.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    The bio.tools registry of software tools and data resources for the life sciences. / Ison, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Ménager, Hervé; Kalaš, Matúš; Schwämmle, Veit; Grüning, Björn; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Vařeková, Radka Svobodová; Raček, Tomáš; Vondrášek, Jiří; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyrönen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpí, Josep; Zambelli, Federico; Savakis, Babis; Leskošek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Løngreen, Peter; Brunak, Søren.

    In: Genome Biology, Vol. 20, No. 1, 12.08.2019, p. 164.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation. / Rabl, Julius; Bunker, Richard D; Schenk, Andreas D; Cavadini, Simone; Gill, Mark E; Abdulrahman, Wassim; Andrés-Pons, Amparo; Luijsterburg, Martijn S; Ibrahim, Adel F M; Branigan, Emma; Aguirre, Jacob D; Marceau, Aimee H; Guérillon, Claire; Bouwmeester, Tewis; Hassiepen, Ulrich; Peters, Antoine H F M; Renatus, Martin; Gelman, Laurent; Rubin, Seth M; Mailand, Niels; van Attikum, Haico; Hay, Ronald T; Thomä, Nicolas H.

    In: Molecular Cell, Vol. 75, No. 3, 08.08.2019, p. 483-497.e9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    ProtFus : A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins. / Tagore, Somnath; Gorohovski, Alessandro; Jensen, Lars Juhl; Frenkel-Morgenstern, Milana.

    In: PLOS Computational Biology, Vol. 15, No. 8, 08.2019, p. e1007239.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. E-pub ahead of print

    sAOP : Linking chemical stressors to Adverse Outcomes Pathway Networks. / Aguayo-Orozco, Alejandro; Audouze, Karine; Siggaard, Troels; Barouki, Robert; Brunak, Søren; Taboureau, Olivier.

    In: Bioinformatics (Online), 22.07.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. E-pub ahead of print

    Analysis and Interpretation of Protein Post-Translational Modification Site Stoichiometry. / Prus, Gabriela; Hoegl, Annabelle; Weinert, Brian T; Choudhary, Chunaram.

    In: Trends in Biochemical Sciences, 08.07.2019.

    Research output: Contribution to journalReviewResearchpeer-review

  19. Published

    Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology. / Spracklen, Cassandra N.; Karaderi, Tugce; Yaghootkar, Hanieh; Schurmann, Claudia; Fine, Rebecca S.; Kutalik, Zoltan; Preuss, Michael H.; Lu, Yingchang; Wittemans, Laura B.L.; Adair, Linda S.; Allison, Matthew; Amin, Najaf; Auer, Paul L.; Bartz, Traci M.; Blüher, Matthias; Boehnke, Michael; Borja, Judith B.; Bork-Jensen, Jette; Broer, Linda; Chasman, Daniel I.; Chen, Yii Der Ida; Chirstofidou, Paraskevi; Demirkan, Ayse; van Duijn, Cornelia M.; Feitosa, Mary F.; Garcia, Melissa E.; Graff, Mariaelisa; Grallert, Harald; Grarup, Niels; Guo, Xiuqing; Haesser, Jeffrey; Hansen, Torben; Harris, Tamara B.; Highland, Heather M.; Hong, Jaeyoung; Ikram, M. Arfan; Ingelsson, Erik; Jackson, Rebecca; Jousilahti, Pekka; Kähönen, Mika; Kizer, Jorge R.; Kovacs, Peter; Kriebel, Jennifer; Laakso, Markku; Lange, Leslie A.; Lehtimäki, Terho; Li, Jin; Lind, Lars; Kilpeläinen, Tuomas O.; Loos, Ruth J.F.

    In: American Journal of Human Genetics, Vol. 105, No. 1, 03.07.2019, p. 15-28.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes : descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium. / IMI-DIRECT consortium.

    In: Diabetologia, 15.06.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. E-pub ahead of print
  22. Published

    DBDS Genomic Cohort, a prospective and comprehensive resource for integrative and temporal analysis of genetic, environmental and lifestyle factors affecting health of blood donors. / Hansen, Thomas Folkmann; Banasik, Karina; Erikstrup, Christian; Pedersen, Ole Birger; Westergaard, David; Chmura, Piotr Jaroslaw; Nielsen, Kaspar; Thørner, Lise; Hjalgrim, Henrik; Paarup, Helene; Larsen, Margit Anita Hørup; Petersen, Mikkel; Jennum, Poul; Andersen, Steffen; Nyegaard, Mette; Jemec, Gregor Borut Ernst; Olesen, Jes; Werge, Thomas; Johansson, Pär I; Sørensen, Erik; Brunak, Søren; Ullum, Henrik; Burgdorf, Kristoffer Sølvsten.

    In: BMJ Open, Vol. 9, No. 6, e028401, 09.06.2019, p. 1-7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Palaeoproteomics resolves sloth relationships. / Presslee, Samantha; Slater, Graham J; Pujos, François; Forasiepi, Analía M; Fischer, Roman; Molloy, Kelly; Mackie, Meaghan; Olsen, Jesper V; Kramarz, Alejandro; Taglioretti, Matías; Scaglia, Fernando; Lezcano, Maximiliano; Lanata, José Luis; Southon, John; Feranec, Robert; Bloch, Jonathan; Hajduk, Adam; Martin, Fabiana M; Salas Gismondi, Rodolfo; Reguero, Marcelo; de Muizon, Christian; Greenwood, Alex; Chait, Brian T; Penkman, Kirsty; Collins, Matthew; MacPhee, Ross D E.

    In: Nature Ecology & Evolution, 06.06.2019, p. 1121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations. / Albrecht, Wiebke; Kappenberg, Franziska; Brecklinghaus, Tim; Stoeber, Regina; Marchan, Rosemarie; Zhang, Mian; Ebbert, Kristina; Kirschner, Hendrik; Grinberg, Marianna; Leist, Marcel; Moritz, Wolfgang; Cadenas, Cristina; Ghallab, Ahmed; Reinders, Jörg; Vartak, Nachiket; van Thriel, Christoph; Golka, Klaus; Tolosa, Laia; Castell, José V; Damm, Georg; Seehofer, Daniel; Lampen, Alfonso; Braeuning, Albert; Buhrke, Thorsten; Behr, Anne-Cathrin; Oberemm, Axel; Gu, Xiaolong; Kittana, Naim; van de Water, Bob; Kreiling, Reinhard; Fayyaz, Susann; van Aerts, Leon; Smedsrød, Bård; Ellinger-Ziegelbauer, Heidrun; Steger-Hartmann, Thomas; Gundert-Remy, Ursula; Zeigerer, Anja; Ullrich, Anett; Runge, Dieter; Lee, Serene M L; Schiergens, Tobias S; Kuepfer, Lars; Aguayo-Orozco, Alejandro; Sachinidis, Agapios; Edlund, Karolina; Gardner, Iain; Rahnenführer, Jörg; Hengstler, Jan G.

    In: Archives of Toxicology, Vol. 93, No. 6, 06.2019, p. 1609-1637.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. E-pub ahead of print

    Sacubitril/valsartan augments postprandial plasma concentrations of active GLP-1 when combined with sitagliptin in men. / Wewer Albrechtsen, Nicolai J; Mark, Peter D; Terzic, Dijana; Hansen, Lasse H; Andersen, Ulrik Ø; Hartmann, Bolette; Carr, Richard D; Gustafsson, Finn; Deacon, Carolyn F; Holst, Jens J; Goetze, Jens P; Plomgaard, Peter.

    In: The Journal of clinical endocrinology and metabolism, 10.05.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. E-pub ahead of print

    Contaminating viral sequences in high-throughput sequencing viromics : a linkage study of 700 sequencing libraries. / Asplund, Maria; Kjartansdóttir, Kristín Rós; Mollerup, Sarah; Vinner, Lasse; Fridholm, Helena; Herrera, José A R; Friis-Nielsen, Jens; Hansen, Thomas Arn; Jensen, Randi Holm; Nielsen, Ida Broman; Richter, Stine Raith; Rey-Iglesia, Alba; Matey-Hernandez, Maria Luisa; Alquezar-Planas, David E; Olsen, Pernille V S; Sicheritz-Pontén, Thomas; Willerslev, Eske; Lund, Ole; Brunak, Søren; Mourier, Tobias; Nielsen, Lars Peter; Izarzugaza, Jose M G; Hansen, Anders Johannes.

    In: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 03.05.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. E-pub ahead of print

    Regulation of GLI1 by cis DNA elements and epigenetic marks. / Taylor, Robert; Long, Jun; Yoon, Joon Won; Childs, Ronnie; Sylvestersen, Kathrine B; Nielsen, Michael L; Leong, King-Fu; Iannaccone, Stephen; Walterhouse, David O; Robbins, David J; Iannaccone, Philip.

    In: DNA Repair, Vol. 79, 02.05.2019, p. 10-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination. / Falcão, Ana Mendanha; Meijer, Mandy; Scaglione, Antonella; Rinwa, Puneet; Agirre, Eneritz; Liang, Jialiang; Larsen, Sara C; Heskol, Abeer; Frawley, Rebecca; Klingener, Michael; Varas-Godoy, Manuel; Raposo, Alexandre A S F; Ernfors, Patrik; Castro, Diogo S; Nielsen, Michael L; Casaccia, Patrizia; Castelo-Branco, Gonçalo.

    In: Cell Reports, Vol. 27, No. 4, 23.04.2019, p. 1090-1102.e10.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    FoxK1 and FoxK2 in insulin regulation of cellular and mitochondrial metabolism. / Sakaguchi, Masaji; Cai, Weikang; Wang, Chih-Hao; Cederquist, Carly T; Damasio, Marcos; Homan, Erica P; Batista, Thiago; Ramirez, Alfred K; Gupta, Manoj K; Steger, Martin; Wewer Albrechtsen, Nicolai J; Singh, Shailendra Kumar; Araki, Eiichi; Mann, Matthias; Enerbäck, Sven; Kahn, C Ronald.

    In: Nature Communications, Vol. 10, No. 1, 05.04.2019, p. 1582.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Molecular dynamics-guided discovery of an ago-allosteric modulator for GPR40/FFAR1. / Lückmann, Michael; Trauelsen, Mette; Bentsen, Marie A; Nissen, Tinne A D; Martins, Joao; Fallah, Zohreh; Nygaard, Mads M; Papaleo, Elena; Lindorff-Larsen, Kresten; Schwartz, Thue W; Frimurer, Thomas M.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, No. 14, 02.04.2019, p. 7123-7128.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Predicting treatment response using pharmacy register in migraine. / Hansen, Thomas Folkmann; Chalmer, Mona Ameri; Haspang, Thilde Marie; Kogelman, Lisette; Olesen, Jes.

    In: The Journal of Headache and Pain, Vol. 20, No. 1, 02.04.2019, p. 31.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The RIF1-PP1 Axis Controls Abscission Timing in Human Cells. / Bhowmick, Rahul; Thakur, Roshan Singh; Venegas, Andrés Bueno; Liu, Ying; Nilsson, Jakob; Barisic, Marin; Hickson, Ian D.

    In: Current biology : CB, Vol. 29, No. 7, 01.04.2019, p. 1232-1242.e5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. E-pub ahead of print

    The liver-alpha cell axis and type 2 diabetes. / Wewer Albrechtsen, Nicolai J; Pedersen, Jens; Galsgaard, Katrine D; Winther-Sørensen, Marie; Suppli, Malte P; Janah, Lina; Gromada, Jesper; Vilstrup, Hendrik; Knop, Filip K; Holst, Jens J.

    In: Endocrine Reviews, 28.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    GIGYF1/2-Driven Cooperation between ZNF598 and TTP in Posttranscriptional Regulation of Inflammatory Signaling. / Tollenaere, Maxim A X; Tiedje, Christopher; Rasmussen, Simon; Nielsen, Julie C; Vind, Anna C; Blasius, Melanie; Batth, Tanveer S; Mailand, Niels; Olsen, Jesper V; Gaestel, Matthias; Bekker-Jensen, Simon.

    In: Cell Reports, Vol. 26, No. 13, 26.03.2019, p. 3511-3521.e4.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    High-Resolution Structure of Cas13b and Biochemical Characterization of RNA Targeting and Cleavage. / Slaymaker, Ian M; Mesa, Pablo; Kellner, Max J; Kannan, Soumya; Brignole, Edward; Koob, Jeremy; Feliciano, Patricia R; Stella, Stefano; Abudayyeh, Omar O; Gootenberg, Jonathan S; Strecker, Jonathan; Montoya, Guillermo; Zhang, Feng.

    In: Cell Reports, Vol. 26, No. 13, 26.03.2019, p. 3741-3751.e5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. E-pub ahead of print

    SUMOylation promotes protective responses to DNA-protein crosslinks. / Borgermann, Nikoline; Ackermann, Leena; Schwertman, Petra; Hendriks, Ivo A; Thijssen, Karen; Liu, Julio Cy; Lans, Hannes; Nielsen, Michael L; Mailand, Niels.

    In: E M B O Journal, 26.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. E-pub ahead of print

    Functional Differences between Synaptic Mitochondria from the Striatum and the Cerebral Cortex. / Petersen, Maria Hvidberg; Willert, Cecilie Wennemoes; Andersen, Jens Velde; Waagepetersen, Helle Sønderby; Skotte, Niels Henning; Nørremølle, Anne.

    In: Neuroscience, Vol. 406, 13.03.2019, p. 432-443.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    The use of systems biology in chemical risk assessment. / Aguayo Orozco, Alejandro; Taboureau, Olivier Thierry; Brunak, Søren.

    In: Current Opinion in Toxicology, 12.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. E-pub ahead of print

    New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. / Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago C; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena.

    In: PLOS Computational Biology, Vol. 15, No. 3, 05.03.2019, p. e1006701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Enamel proteome sequences from Dmanisi (Georgia) enable molecular phylogeny beyond the limits of ancient DNA preservation. / Cappellini, Enrico; Welker, Frido; Olsen, Jesper V.; Lordkipanidze, David; Willerslev, Eske.

    In: American Journal of Physical Anthropology, Vol. 168, No. suppl. 68, 03.2019, p. 35-35.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  41. Published

    Palaeoproteomic analysis of Early Pleistocene Gigantopithecus blacki. / Welker, Frido; Ramos-Madrigal, Jazmin; Wang, Wei; Kuhlwilm, Martin; Montero, Marc De Manuel; Demeter, Fabrice; Lalueza-Fox, Carles; Marques-Bonet, Tomas; Olsen, Jesper V.; Cappellini, Enrico.

    In: American Journal of Physical Anthropology, Vol. 168, No. suppl. 68, 03.2019, p. 265-266.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  42. E-pub ahead of print

    Glucose and Amino Acid Metabolism in Mice Depend Mutually on Glucagon and Insulin Receptor Signaling. / Galsgaard, Katrine D; Winther-Sørensen, Marie; Pedersen, Jens; Kjeldsen, Sasha A S; Rosenkilde, Mette M; Wewer Albrechtsen, Nicolai J; Holst, Jens J.

    In: A J P: Endocrinology and Metabolism (Online), 26.02.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    SignalP 5.0 improves signal peptide predictions using deep neural networks. / Armenteros, José Juan Almagro; Tsirigos, Konstantinos; Sønderby, Casper Kaae; Petersen, Thomas Nordahl; Winther, Ole; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Biotechnology, Vol. 37, No. 4, 18.02.2019, p. 420-423.

    Research output: Contribution to journalJournal articleCommunication

  44. Published

    The severity of ankylosing spondylitis and responses to anti-tumour necrosis factor biologics are not influenced by the tumour necrosis factor receptor polymorphism incriminated in multiple sclerosis. / Watts, Laura; Karaderi, Tugce; Roberts, Amity; Appleton, Louise; Wordsworth, Tom; Cohen, Carla; Wordsworth, Paul; Vecellio, Matteo.

    In: Genes and Immunity, Vol. 20, No. 2, 01.02.2019, p. 167-171.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice. / Poupeau, Audrey; Garde, Christian; Sulek, Karolina; Citirikkaya, Kiymet; Treebak, Jonas T; Arumugam, Manimozhiyan; Simar, David; Olofsson, Louise E; Bäckhed, Fredrik; Barrès, Romain.

    In: FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 33, No. 2, 02.2019, p. 2719-2731.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Acetylation of intrinsically disordered regions regulates phase separation. / Saito, Makoto; Hess, Daniel; Eglinger, Jan; Fritsch, Anatol W; Kreysing, Moritz; Weinert, Brian T; Choudhary, Chunaram; Matthias, Patrick.

    In: Nature Chemical Biology, Vol. 15, No. 1, 01.2019, p. 51-61.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    53BP1 nuclear bodies enforce replication timing at under-replicated DNA to limit heritable DNA damage. / Spies, Julian; Lukas, Claudia; Somyajit, Kumar; Rask, Maj-Britt; Lukas, Jiri; Neelsen, Kai John.

    In: Nature Cell Biology, Vol. 21, 2019, p. 487-497.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    A Brief History of Protein Sorting Prediction. / Nielsen, Henrik; Tsirigos, Konstantinos D.; Brunak, Søren; von Heijne, Gunnar.

    In: The Protein Journal, Vol. 38, No. 3, 2019, p. 200-216.

    Research output: Contribution to journalReviewResearchpeer-review

  49. Published

    A Guide to Dictionary-Based Text Mining. / Cook, Helen V.; Jensen, Lars Juhl.

    Bioinformatics and Drug Discovery. ed. / Richard S. Larson; Tudor I. Oprea. Vol. 1939 3. ed. Humana Press, 2019. p. 73-89 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  50. Published

    A chromatin-based signalling mechanism directs the switch from mutagenic to error-free repair of DNA double strand breaks. / Bartke, Till; Groth, Anja.

    In: Molecular & Cellular Oncology, Vol. 6, No. 4, 1605820, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    A generic deep convolutional neural network framework for prediction of receptor–ligand interactions - NetPhosPan : application to kinase phosphorylation prediction. / Fenoy, Emilio; Izarzugaza, Jose M.G.; Jurtz, Vanessa; Brunak, Søren; Nielsen, Morten.

    In: Bioinformatics, Vol. 35, No. 7, 2019, p. 1098-1107.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    A large-cohort, longitudinal study determines pre-cancer disease routes across different cancer types. / Hu, Jessica X; Helleberg, Marie; Jensen, Anders B; Brunak, Søren; Lundgren, Jens.

    In: Cancer Research, Vol. 79, No. 4, 2019, p. 864-872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    A quantitative Streptococcus pyogenes - human protein - protein interaction map reveals localization of opsonizing antibodies. / Happonen, Lotta; Hauri, Simon; Svensson Birkedal, Gabriel; Karlsson, Christofer; de Neergaard, Therese; Khakzad, Hamed; Nordenfelt, Pontus; Wikström, Mats; Wisniewska, Magdalena; Björck, Lars; Malmström, Lars; Malmström, Johan.

    In: Nature Communications, Vol. 10, 2727, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    ADAMTS9 regulates skeletal muscle insulin sensitivity through extracellular matrix alterations. / Graae, Anne-Sofie; Grarup, Niels; Ribel-Madsen, Rasmus; Lystbæk, Sara Hyldegaard; Boesgaard, Trine; Staiger, Harald; Fritsche, Andreas; Wellner, Niels; Sulek, Karolina; Kjølby, Mads Fuglsang; Backe, Marie Balslev; Chubanava, Sabina; Prats, Clara; Serup, Annette Karen Lundbeck; Birk, Jesper Bratz; Dubail, Johanne; Gillberg, Linn; Vienberg, Sara Gry; Nykjær, Anders; Kiens, Bente; Wojtaszewski, Jørgen; Larsen, Steen; Apte, Suneel S; Häring, Hans-Ulrich; Vaag, Allan; Zethelius, Björn; Pedersen, Oluf Borbye; Treebak, Jonas Thue; Hansen, Torben; Holst, Birgitte.

    In: Diabetes, Vol. 68, No. 3, 2019, p. 502-514.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Alternative Translation Initiation Generates a Functionally Distinct Isoform of the Stress-Activated Protein Kinase MK2. / Trulley, Philipp; Snieckute, Goda; Bekker-Jensen, Dorte; Menon, Manoj B; Freund, Robert; Kotlyarov, Alexey; Olsen, Jesper V; Diaz-Muñoz, Manuel D; Turner, Martin; Bekker-Jensen, Simon; Gaestel, Matthias; Tiedje, Christopher.

    In: Cell Reports, Vol. 27, No. 10, 2019, p. 2859-2870.e6.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    An advanced strategy for comprehensive profiling of ADP-ribosylation sites using mass spectrometry-based proteomics. / Hendriks, Ivo A.; Larsen, Sara C.; Nielsen, Michael L.

    In: Molecular and Cellular Proteomics, Vol. 18, No. 5, 2019, p. 1010-1026.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism. / Cuesta-Astroz, Yesid; Santos, Alberto; Oliveira, Guilherme; Jensen, Lars J.

    In: Frontiers in Immunology, Vol. 10, 212, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation. / Hansen, Bogi Karbech; Gupta, Rajat; Baldus, Linda; Lyon, David; Narita, Takeo; Lammers, Michael; Choudhary, Chunaram; Weinert, Brian T.

    In: Nature Communications, Vol. 10, 1055, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Associations between olfactory pathway gene methylation marks, obesity features and dietary intakes. / Ramos-Lopez, Omar; Riezu-Boj, Jose I.; Milagro, Fermin I.; Zulet, M. Angeles; Santos, Jose L.; Martinez, J. Alfredo; Astrup, Arne; Larsen, Thomas Meinert; MENA Project.

    In: Genes & Nutrition, Vol. 14, 11, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Bile acids drive colonic secretion of glucagon-like-peptide 1 and peptide-YY in rodents. / Christiansen, Charlotte Bayer; Trammell, Samuel Addison Jack; Albrechtsen, Nicolai Jacob Wewer; Schoonjans, Kristina; Albrechtsen, Reidar; Gillum, Matthew Paul; Kuhre, Rune Ehrenreich; Holst, Jens Juul.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 316, No. 5, 2019, p. G574-G584.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    BioReader : a text mining tool for performing classification of biomedical literature. / Simon, Christian; Davidsen, Kristian; Hansen, Christina; Seymour, Emily; Barnkob, Mike Bogetofte; Olsen, Lars Ronn.

    In: BMC Bioinformatics, Vol. 19, No. Suppl. 13, 57, 2019.

    Research output: Contribution to journalConference articleResearchpeer-review

  62. Published

    Bone Status in Obese, Non-diabetic, Antipsychotic-Treated Patients, and Effects of the Glucagon-Like Peptide-1 Receptor Agonist Exenatide on Bone Turnover Markers and Bone Mineral Density. / Eriksson, Robert; Broberg, Brian V.; Ishoy, Pelle L.; Bak, Nikolaj; Andersen, Ulrik B.; Jorgensen, Niklas R.; Knop, Filip K.; Ebdrup, Bjørn H.

    In: Frontiers in Psychiatry, Vol. 9, 781, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Breast milk alkylglycerols sustain beige adipocytes through adipose tissue macrophages. / Yu, Haidong; Dilbaz, Sedat; Coßmann, Jonas; Hoang, Anh Cuong; Diedrich, Victoria; Herwig, Annika; Harauma, Akiko; Hoshi, Yukino; Moriguchi, Toru; Landgraf, Kathrin; Körner, Antje; Lucas, Christina; Brodesser, Susanne; Balogh, Lajos; Thuróczy, Julianna; Karemore, Gopal; Kuefner, Michael Scott; Park, Edwards A; Rapp, Christine; Travers, Jeffrey Bryant; Röszer, Tamás.

    In: The Journal of Clinical Investigation, Vol. 129, No. 6, 2019, p. 2485-2499.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Citrullination of HP1γ chromodomain affects association with chromatin. / Wiese, Meike; Bannister, Andrew J; Basu, Srinjan; Boucher, Wayne; Wohlfahrt, Kai; Christophorou, Maria A; Nielsen, Michael L; Klenerman, David; Laue, Ernest D; Kouzarides, Tony.

    In: Epigenetics & Chromatin, Vol. 12, 21, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. E-pub ahead of print

    Clinical association to FKBP5 rs1360780 in patients with depression. / Dam, Henrik; Buch, Jens O D; Nielsen, Annelaura B; Weikop, Pia; Werge, Thomas; Jørgensen, Martin B.

    In: Psychiatric Genetics, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Accepted/In press

    CoCoScore : Context-aware co-occurrence scoring for text mining applications using distant supervision. / Junge, Alexander; Jensen, Lars Juhl.

    In: Bioinformatics (Online), 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Combined Ensemble Docking and Machine Learning in Identification of Therapeutic Agents with Potential Inhibitory Effect on Human CES1. / Briand, Eliane; Thomsen, Ragnar; Linnet, Kristian; Rasmussen, Henrik Berg; Brunak, Søren; Taboureau, Olivier.

    In: Molecules, Vol. 24, No. 15, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Combined GLP-1, Oxyntomodulin, and Peptide YY Improves Body Weight and Glycemia in Obesity and Prediabetes/Type 2 Diabetes : A Randomized Single-Blinded Placebo Controlled Study. / Behary, Preeshila; Tharakan, George; Alexiadou, Kleopatra; Johnson, Nicholas; Albrechtsen, Nicolai Jacob Wewer; Kenkre, Julia; Cuenco, Joyceline; Hope, David; Anyiam, Oluwaseun; Choudhury, Sirazum; Alessimii, Haya; Poddar, Ankur; Minnion, James; Doyle, Chedie; Frost, Gary; Le Roux, Carel; Purkayastha, Sanjay; Moorthy, Krishna; Dhillo, Waljit; Holst, Jens J; Ahmed, Ahmed R; Prevost, A Toby; Bloom, Stephen R; Tan, Tricia M.

    In: Diabetes Care, Vol. 42, No. 7, dc190449, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Combing the Hairball : Improving Visualization of miRNA-Target Interaction Networks. / Russo, Francesco; Hu, Jessica Xin; Romero Herrera, Jose Alejandro; Brunak, Søren.

    MicroRNA Target Identification: Methods and Protocols. ed. / Alessandro Laganà. Humana Press, 2019. p. 279-289 (Methods in Molecular Biology, Vol. 1970).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  70. E-pub ahead of print
  71. Published

    Comparison of quantitative trait loci methods : Total expression and allelic imbalance method in brain RNA-seq. / Gådin, Jesper R; Buil, Alfonso; Colantuoni, Carlo; Jaffe, Andrew E; Nielsen, Jacob; Shin, Joo-Heon; Hyde, Thomas M; Kleinman, Joel E; Plath, Niels; Eriksson, Per; Brunak, Søren; Didriksen, Michael; Weinberger, Daniel R; Folkersen, Lasse; BrainSeq Consortium.

    In: PLoS ONE, Vol. 14, No. 6, e0217765, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Accepted/In press

    Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men. / Jiang, Li; Audouze, Karine; Romero Herrera, Jose Alejandro; Ängquist, Lars Henrik; Kjærulff, Sonny Kim; Izarzugaza, Jose M. G.; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Sørensen, Thorkild I. A.; Brunak, Søren.

    In: Clinical Nutrition, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Cyprus Women's Health Research (COHERE) initiative : determining the relative burden of women's health conditions and related co-morbidities in an Eastern Mediterranean population. / Hocaoglu, M B; Gurkas, S; Karaderi, T.; Taneri, B; Erguler, K; Barin, B; Bilgin, E M; Eralp, G; Allison, M; Findikli, N; Boynukalin, K; Bahceci, M; Naci, H; Vincent, K; Missmer, S A; Becker, C M; Zondervan, K T; Rahmioglu, N.

    In: BMC Women's Health, Vol. 19, 50, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Cytoscape stringApp : Network analysis and visualization of proteomics data. / Doncheva, Nadezhda T; Morris, John; Gorodkin, Jan; Jensen, Lars J.

    In: Journal of Proteome Research, Vol. 18, No. 2, 2019, p. 623-632.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Design, implementation, and operation of a rapid, robust named entity recognition web service. / Pletscher-Frankild, Sune; Jensen, Lars Juhl.

    In: Journal of Cheminformatics, Vol. 11, 19, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Dynamics of the Eukaryotic Replicative Helicase at Lagging-Strand Protein Barriers Support the Steric Exclusion Model. / Kose, Hazal B.; Larsen, Nicolai B.; Duxin, Julien P.; Yardimci, Hasan.

    In: Cell Reports, Vol. 26, No. 8, 2019, p. 2113-2125.e6.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Effects of Acute GLP-1 Infusion on Pulmonary and Systemic Hemodynamics in Patients With Heart Failure : A Pilot Study. / Clarke, Sophie J.; Pettit, Stephen; Giblett, Joel P.; Zhao, Tian; Kydd, Anna C.; Albrechtsen, Nicolai J. W.; Deacon, Carolyn F.; Parameshwar, Jayan; Hoole, Stephen P.

    In: Clinical Therapeutics, Vol. 41, No. 1, 2019, p. 118-127.e0.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex. / Zhang, Gang; Kruse, Thomas; Guasch Boldú, Claudia; Garvanska, Dimitriya H; Coscia, Fabian; Mann, Matthias; Barisic, Marin; Nilsson, Jakob.

    In: E M B O Journal, Vol. 38, No. 7, e100977, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Enhanced cerebral branched-chain amino acid metabolism in R6/2 mouse model of Huntington's disease. / Andersen, Jens V.; Skotte, Niels H.; Aldana, Blanca I.; Nørremølle, Anne; Waagepetersen, Helle S.

    In: Cellular and Molecular Life Sciences, Vol. 76, No. 12, 2019, p. 2449-2461.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium. / Russo, D. A.; Zedler, J. A. Z.; Wittmann, D. N.; Möllers, B.; Singh, R. K.; Batth, T. S.; van Oort, B.; Olsen, J. V.; Bjerrum, M. J.; Jensen, P. E.

    In: Biotechnology for Biofuels, Vol. 12, No. 1, 74, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Functions and mechanisms of non-histone protein acetylation. / Narita, Takeo; Weinert, Brian T; Choudhary, Chunaram.

    In: Nature Reviews. Molecular Cell Biology, Vol. 20, 2019, p. 156-174.

    Research output: Contribution to journalReviewResearchpeer-review

  82. Published

    Genomic characterization of cyanophage vB_AphaS-CL131 infecting filamentous diazotrophic cyanobacterium Aphanizomenon flos-aquae reveals novel insights into virus-bacterium interactions. / Šulčius, Sigitas; Šimoliūnas, Eugenijus; Alzbutas, Gediminas; Gasiūnas, Giedrius; Jauniškis, Vykintas; Kuznecova, Jolita; Miettinen, Sini; Nilsson, Emelie; Meškys, Rolandas; Roine, Elina; Paškauskas, Ričardas; Holmfeldt, Karin.

    In: Applied and Environmental Microbiology, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Glucagon Receptor Signaling and Glucagon Resistance. / Janah, Lina; Kjeldsen, Sasha; Galsgaard, Katrine D.; Winther-Sorensen, Marie; Stojanovska, Elena; Pedersen, Jens; Knop, Filip K.; Holst, Jens J.; Albrechtsen, Nicolai J. Wewer.

    In: International Journal of Molecular Sciences, Vol. 20, No. 13, 3314, 2019.

    Research output: Contribution to journalReviewResearchpeer-review

  84. Published

    Glucagon Receptor Signaling and Lipid Metabolism. / Galsgaard, Katrine D; Pedersen, Jens; Knop, Filip K; Holst, Jens J; Wewer Albrechtsen, Nicolai J.

    In: Frontiers in Physiology, Vol. 10, 413, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Half-Life Extending Modifications of Peptide YY3-36 Direct Receptor-Mediated Internalization. / Bech, Esben M.; Kaiser, Anette; Bellmann-Sickert, Kathrin; Nielsen, Søren S.-R.; Sørensen, Kasper K.; Elster, Lisbeth; Hatzakis, Nikos; Pedersen, Søren L.; Beck-Sickinger, Annette G.; Jensen, Knud J.

    In: Molecular Pharmaceutics, Vol. 16, No. 8, 2019, p. 3665-3677.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites. / Li, Xuanji; Brejnrod, Asker Daniel; Ernst, Madeleine; Rykær, Martin; Herschend, Jakob; Olsen, Nanna Mee Coops; Dorrestein, Pieter C.; Rensing, Christopher; Sørensen, Søren Johannes.

    In: Environment International, Vol. 126, 2019, p. 454-467.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Identification of ADAM12 as a Novel Basigin Sheddase. / Albrechtsen, Reidar; Wewer Albrechtsen, Nicolai J; Gnosa, Sebastian; Schwarz, Jeanette; Dyrskjøt, Lars; Kveiborg, Marie.

    In: International Journal of Molecular Sciences , Vol. 20, No. 8, 2019, p. 1-14.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Identification of Disease-miRNA Networks Across Different Cancer Types Using SWIM. / Fiscon, Giulia; Conte, Federica; Farina, Lorenzo; Pellegrini, Marco; Russo, Francesco; Paci, Paola.

    MicroRNA Target Identification: Methods and Protocols. ed. / Alessandro Laganà. Humana Press, 2019. p. 169-181 (Methods in Molecular Biology, Vol. 1970).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  89. Published

    Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types. / Hjaltelin, Jessica Xin; Izarzugaza, Jose M G; Jensen, Lars Juhl; Russo, Francesco; Westergaard, David; Brunak, Søren.

    In: npj Systems Biology and Applications, Vol. 5, 2019, p. 27.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Immunity and mental illness : findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders. / Nudel, Ron; Benros, Michael E; Krebs, Morten Dybdahl; Allesøe, Rosa Lundbye; Lemvigh, Camilla Koldbæk; Bybjerg-Grauholm, Jonas; Børglum, Anders D; Daly, Mark J; Nordentoft, Merete; Mors, Ole; Hougaard, David M; Mortensen, Preben Bo; Buil, Alfonso; Werge, Thomas; Rasmussen, Simon; Thompson, Wesley K.

    In: European Journal of Human Genetics, Vol. 27, 2019, p. 1445-1455.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models. / Kirik, Ufuk; Refsgaard, Jan C.; Jensen, Lars J.

    In: Journal of Proteome Research, Vol. 18, No. 6, 2019, p. 2385-2396.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Inferring disease-associated long non-coding RNAs using genome - wide tissue expression profiles. / Pan, Xiaoyong; Jensen, Lars Juhl; Gorodkin, Jan.

    In: Bioinformatics, Vol. 35, No. 9, 2019, p. 1494-1502.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Insights into mitotic checkpoint by integrating CRISPR and RNAi. / Zhang, Gang.

    In: Molecular & Cellular Oncology, Vol. 6, No. 4, 1603436, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells. / Samudyata; Amaral, Paulo P.; Engström, Pär G.; Robson, Samuel C.; Nielsen, Michael L.; Kouzarides, Tony; Castelo-Branco, Gonçalo.

    In: Experimental Cell Research, Vol. 381, No. 1, 2019, p. 129-138.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Large-scale study of Toxoplasma and Cytomegalovirus shows an association between infection and serious psychiatric disorders. / Burgdorf, Kristoffer Sølvsten; Trabjerg, Betina; Giørtz Pedersen, Marianne; Nissen, Janna; Banasik, Karina; Birger Pedersen, Ole; Sørensen, Erik; René Nielsen, Kaspar; Hørup Larsen, Margit; Erikstrup, Christian; Bruun-Rasmussen, Peter; Westergaard, David; Wegner Thørner, Lise; Hjalgrim, Henrik; Martina Paarup, Helene; Brunak, Søren; Pedersen, Carsten B.; Fuller Torrey, E; Werge, Thomas; Bo Mortensen, Preben; Yolken, Robert; Ullum, Henrik.

    In: Brain, Behavior, and Immunity, Vol. 79, 2019, p. 152-158.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    MaxQuant.Live enables global targeting of more than 25,000 peptides. / Wichmann, Christoph; Meier, Florian; Virreira Winter, Sebastian; Brunner, Andreas-David; Cox, Jürgen; Mann, Matthias.

    In: Molecular and Cellular Proteomics, Vol. 18, No. 5, 2019, p. 982-994.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Mechanisms preserving insulin action during high dietary fat intake. / Lundsgaard, Annemarie; Holm, Jacob Bak; Sjøberg, Kim Anker; Bojsen-Møller, Kirstine N; Myrmel, Lene S; Fjære, Even; Jensen, Benjamin Anderschou Holbech; Nicolaisen, Trine Sand; Hingst, Janne Rasmuss; Hansen, Sine L; Doll, Sophia; Geyer, Philip E; Deshmukh, Atul Shahaji; Holst, Jens Juul; Madsen, Lise; Kristiansen, Karsten; Wojtaszewski, Jørgen; Richter, Erik; Kiens, Bente.

    In: Cell Metabolism, Vol. 29, No. 1, 2019, p. 50-63, e1-e4.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Molecular architecture of the Jumonji C family histone demethylase KDM5B. / Dorosz, Jerzy; Kristensen, Line Hyltoft; Aduri, Nanda G; Mirza, Osman; Lousen, Rikke; Bucciarelli, Saskia; Mehta, Ved; Sellés-Baiget, Selene; Solbak, Sara Marie Øie; Bach, Anders; Mesa, Pablo; Hernandez, Pablo Alcon; Montoya, Guillermo; Nguyen, Tam T. T. N.; Rand, Kasper D.; Boesen, Thomas; Gajhede, Michael.

    In: Scientific Reports, Vol. 9, 4019, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage. / Lahm, Harald; Dressen, Martina; Beck, Nicole; Doppler, Stefanie; Deutsch, Marcus-Andre; Matsushima, Shunsuke; Neb, Irina; Koenig, Karl Christian; Sideris, Konstantinos; Voss, Stefanie; Eschenbach, Lena; Puluca, Nazan; Deisenhofer, Isabel; Doll, Sophia; Holdenrieder, Stefan; Mann, Matthias; Lange, Ruediger; Krane, Markus.

    In: Scientific Reports, Vol. 9, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants. / Doncheva, Nadezhda T.; Domingues, Francisco S.; McGivern, David R.; Shimakami, Tetsuro; Zeuzem, Stefan; Lengauer, Thomas; Lange, Christian M.; Albrecht, Mario; Welsch, Christoph.

    In: Journal of Molecular Biology, Vol. 431, No. 12, 2019, p. 2354-2368.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published
  102. Published

    No direct effect of SGLT2 activity on glucagon secretion. / Kuhre, Rune E; Ghiasi, Seyed M; Adriaenssens, Alice E.; Albrechtsen, Nicolai Jacob Wewer; Andersen, Daniel B.; Aivazidis, Alexander; Chen, Lihua; Mandrup-Poulsen, Thomas; Ørskov, Cathrine; Gribble, Fiona M.; Reimann, Frank; Wierup, Nils; Tyrberg, Björn; Holst, Jens J.

    In: Diabetologia, Vol. 62, No. 6, 2019, p. 1011-1023.

    Research output: Contribution to journalJournal articleResearchpeer-review

  103. Published

    Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease. / Niu, Lili; Geyer, Philipp E.; Albrechtsen, Nicolai Jacob Wewer; Gluud, Lise L; Santos, Alberto; Doll, Sophia; Treit, Peter V; Holst, Jens J; Knop, Filip K; Vilsbøll, Tina; Junker, Anders; Sachs, Stephan; Stemmer, Kerstin; Müller, Timo D; Tschöp, Matthias H; Hofmann, Susanna M; Mann, Matthias.

    In: Molecular Systems Biology, Vol. 15, e8793, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  104. Published

    Population-wide analysis of differences in disease progression patterns in men and women. / Westergaard, David; Moseley, Pope; Sørup, Freja Karuna Hemmingsen; Baldi, Pierre; Brunak, Søren.

    In: Nature Communications, Vol. 10, No. 1, 666, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  105. Published

    Prevalence of patients with self‐reported hidradenitis suppurativa in a cohort of Danish blood donors : a cross‐sectional study. / Riis, P. Theut; Pedersen, O.B.; Sigsgaard, V.; Erikstrup, C; Paarup, H M; Nielsen, K.R.; Burgdorf, K.S.; Hjalgrim, H; Rostgaard, K.; Banasik, K.; Ullum, H.; Jemec, G.B.

    In: British Journal of Dermatology, Vol. 180, No. 4, 2019, p. 774-781.

    Research output: Contribution to journalJournal articleResearchpeer-review

  106. Published

    Promoting transparency and reproducibility in enhanced molecular simulations. / Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A.; Banas, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G.; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L.; Filizola, Marta; Fraser, James S.; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T.; Hocky, Glen M.; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E.; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; Lindorff-Larsen, Kresten; Lohr, Thomas; Marinelli, Fabrizio; Martin-Samos, Layla; Masetti, Matteo; Meyer, Ralf; Michaelides, Angelos; Molteni, Carla; Morishita, Tetsuya; Nava, Marco; Paissoni, Cristina; Papaleo, Elena; Parrinello, Michele; Pfaendtner, Jim; Piaggi, Pablo; Piccini, GiovanniMaria; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Provasi, Davide; Quigley, David; Raiteri, Paolo; Raniolo, Stefano; Rydzewski, Jakub; Salvalaglio, Matteo; Sosso, Gabriele Cesare; Spiwok, Vojtech; Sponer, Jiri; Swenson, David W. H.; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew.

    In: Nature Methods, Vol. 16, No. 8, 2019, p. 670-673.

    Research output: Contribution to journalEditorialResearchpeer-review

  107. Published

    Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation. / Batth, Tanveer Singh; Tollenaere, Maxim A. X.; Rüther, Patrick Leopold; Gonzalez-Franquesa, Alba; Prabhakar, Bhargav Saligram; Bekker-Jensen, Simon Holst; Deshmukh, Atul Shahaji; Olsen, Jesper V.

    In: Molecular and Cellular Proteomics, Vol. 18, No. 5, 2019, p. 1027-1035.

    Research output: Contribution to journalJournal articleResearchpeer-review

  108. Published

    Protein phosphatases in the regulation of mitosis. / Nilsson, Jakob.

    In: The Journal of Cell Biology, Vol. 218, No. 2, 395, 2019.

    Research output: Contribution to journalReviewResearchpeer-review

  109. Published

    Proteogenomic characterization of patient-derived xenografts highlights the role of REST in neuroendocrine differentiation of castration-resistant prostate cancer. / Flores-Morales, Amilcar; Bergmann, Tobias B; Lavallee, Charlotte; Batth, Tanveer S.; Lin, Dong; Lerdrup, Mads; Friis, Stine; Bartels, Anette; Kristensen, Gitte; Krzyzanowska, Agnieszka; Xue, Hui; Fazli, Ladan; Hansen, Klaus; Røder, Martin A.; Brasso, Klaus; Moreira, José M; Bjartell, Anders; Wang, Yuzhuo; Olsen, Jesper V.; Collins, Colin C; Iglesias-Gato, Diego.

    In: Clinical Cancer Research, Vol. 25, No. 2, 2019, p. 1-15.

    Research output: Contribution to journalJournal articleResearchpeer-review

  110. Published

    Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts. / Eckert, Mark A; Coscia, Fabian; Chryplewicz, Agnieszka; Chang, Jae Won; Hernandez, Kyle M; Pan, Shawn; Tienda, Samantha M; Nahotko, Dominik A; Li, Gang; Blaženović, Ivana; Lastra, Ricardo R; Curtis, Marion; Yamada, S Diane; Perets, Ruth; McGregor, Stephanie M; Andrade, Jorge; Fiehn, Oliver; Moellering, Raymond E; Mann, Matthias; Lengyel, Ernst.

    In: Nature, Vol. 569, No. 7758, 2019, p. 723-728.

    Research output: Contribution to journalLetterResearchpeer-review

  111. Published

    Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking. / Linscheid, Nora; Logantha, Sunil Jit R. J.; Poulsen, Camilla; Zhang, Shanzhuo; Schrolkamp, Maren; Egerod, Kristoffer Lihme; Thompson, Jonatan James; Kitmitto, Ashraf; Galli, Gina; Humphries, Martin J.; Zhang, Henggui; Pers, Tune H.; Olsen, Jesper Velgaard; Boyett, Mark; Lundby, Alicia.

    In: Nature Communications, Vol. 10, 2889, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  112. Published

    Release of transcriptional repression via ErbB2-induced, SUMO-directed phosphorylation of myeloid zinc finger-1 serine 27 activates lysosome redistribution and invasion. / Brix, Ditte Marie; Tvingsholm, Siri Amanda; Hansen, Malene Bredahl; Clemmensen, Knut Bundgaard; Ohman, Tiina; Siino, Valentina; Lambrughi, Matteo; Hansen, Klaus; Puustinen, Pietri; Gromova, Irina; James, Peter; Papaleo, Elena; Varjosalo, Markku; Moreira, José; Jäättelä, Marja; Kallunki, Tuula.

    In: Oncogene, Vol. 38, 2019, p. 3170-3184.

    Research output: Contribution to journalJournal articleResearchpeer-review

  113. Published

    Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts. / Larsen, Nicolai B.; Gao, Alan O.; Sparks, Justin L; Gallina, Irene; Wu, R Alex; Mann, Matthias; Räschle, Markus; Walter, Johannes C; Duxin, Julien P.

    In: Molecular Cell, Vol. 73, No. 3, 2019, p. 574-588.e7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  114. Published

    Roadmap for a precision-medicine initiative in the Nordic region. / Njølstad, Pål Rasmus; Andreassen, Ole Andreas; Brunak, Søren; Børglum, Anders D; Dillner, Joakim; Esko, Tõnu; Franks, Paul W; Freimer, Nelson; Groop, Leif; Heimer, Hakon; Hougaard, David M; Hovig, Eivind; Hveem, Kristian; Jalanko, Anu; Kaprio, Jaakko; Knudsen, Gun Peggy; Melbye, Mads; Metspalu, Andres; Mortensen, Preben Bo; Palmgren, Juni; Palotie, Aarno; Reed, Wenche; Stefánsson, Hreinn; Stitziel, Nathan O; Sullivan, Patrick F; Thorsteinsdóttir, Unnur; Vaudel, Marc; Vuorio, Eero; Werge, Thomas; Stoltenberg, Camilla; Stefánsson, Kári.

    In: Nature Genetics, Vol. 51, 2019, p. 924-930.

    Research output: Contribution to journalComment/debateResearch

  115. Published

    STRING v11 : protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. / Szklarczyk, Damian; Gable, Annika L; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T; Morris, John H; Bork, Peer; Jensen, Lars J; von Mering, Christian.

    In: Nucleic Acids Research, Vol. 47, No. D1, 2019, p. D607-D613.

    Research output: Contribution to journalJournal articleResearchpeer-review

  116. E-pub ahead of print

    Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120. / Plattner, Michel; Shneider, Mikhail M.; Arbatsky, Nikolay P.; Shashkov, Alexander S.; Chizhov, Alexander O.; Nazarov, Sergey; Prokhorov, Nikolai S.; Taylor, Nicholas M.I.; Buth, Sergey A.; Gambino, Michela; Gencay, Yilmaz Emre; Brøndsted, Lone; Kutter, Elizabeth M.; Knirel, Yuriy A.; Leiman, Petr G.

    In: Journal of Molecular Biology, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  117. Published

    The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair. / Sparks, Justin L; Chistol, Gheorghe; Gao, Alan O.; Räschle, Markus; Larsen, Nicolai B.; Mann, Matthias; Duxin, Julien P.; Walter, Johannes C.

    In: Cell, Vol. 176, No. 1-2, 2019, p. 167-181.e21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  118. Published

    The Case for Proteomics and Phospho-Proteomics in Personalized Cancer Medicine. / Doll, Sophia; Gnad, Florian; Mann, Matthias.

    In: Proteomics - Clinical Applications, Vol. 13, No. 2, e1800113, 2019.

    Research output: Contribution to journalReviewResearchpeer-review

  119. Published

    The combined effects of FADS gene variation and dietary fats in obesity-related traits in a population from the far north of Sweden : the GLACIER Study. / Chen, Yan; Estampador, Angela C; Keller, Maria; Poveda, Alaitz; Dalla-Riva, Jonathan; Johansson, Ingegerd; Renström, Frida; Kurbasic, Azra; Franks, Paul W; Varga, Tibor V.

    In: International Journal of Obesity, Vol. 43, 2019, p. 808-820.

    Research output: Contribution to journalJournal articleResearchpeer-review

  120. Published

    The nucleolus functions as a phase-separated protein quality control compartment. / Frottin, F.; Schueder, F.; Tiwary, S.; Gupta, R.; Koerner, R.; Schlichthaerle, T.; Cox, J.; Jungmann, R.; Hartl, F. U.; Hipp, M. S.

    In: Science, Vol. 365, No. 6451, 2019, p. 342-.

    Research output: Contribution to journalJournal articleResearchpeer-review

  121. Published

    Top-Down and Intact Protein Mass Spectrometry Data Visualization for Proteoform Analysis Using VisioProt-MS. / Lesne, Jean; Bousquet, Marie-Pierre; Marcoux, Julien; Locard-Paulet, Marie.

    In: Bioinformatics and Biology Insights, Vol. 13, 2019, p. 1177932219868223.

    Research output: Contribution to journalJournal articleResearchpeer-review

  122. Published

    Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis. / Yarani, R.; Palasca, O.; Doncheva, N. Tsankova; Anthon, C.; Pilecki, B.; Litman, T.; Holmskov, U.; Jensen, L. J.; Gorodkin, J.; Pociot, F.

    In: Journal of Crohn's and Colitis, Vol. 13, 2019, p. S129-S130.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  123. Published

    Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. / Schroeder, Hannes; Margaryan, Ashot; Szmyt, Marzena; Theulot, Bertrand; Włodarczak, Piotr; Rasmussen, Simon; Gopalakrishnan, Shyam; Szczepanek, Anita; Konopka, Tomasz; Jensen, Theis Z. T.; Witkowska, Barbara; Wilk, Stanisław; Przybyła, Marcin M; Pospieszny, Łukasz; Sjögren, Karl-Göran; Belka, Zdzislaw; Olsen, Jesper; Kristiansen, Kristian; Willerslev, Eske; Frei, Karin M.; Sikora, Martin; Johannsen, Niels N.; Allentoft, Morten E.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, No. 22, 2019, p. 10705-10710.

    Research output: Contribution to journalJournal articleResearchpeer-review

  124. Published

    Use of Computational Biochemistry for Elucidating Molecular Mechanisms of Nitric Oxide Synthase. / Bignon, Emmanuelle; Rizza, Salvatore; Filomeni, Giuseppe; Papaleo, Elena.

    In: Computational and Structural Biotechnology Journal, Vol. 17, 2019, p. 415-429.

    Research output: Contribution to journalReviewResearchpeer-review

  125. Published

    eggNOG 5.0 : a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. / Huerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernández-Plaza, Ana; Forslund, Sofia K; Cook, Helen; Mende, Daniel R; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J; von Mering, Christian; Bork, Peer.

    In: Nucleic Acids Research, Vol. 47, No. D1, 2019, p. D309-D314.

    Research output: Contribution to journalJournal articleResearchpeer-review

  126. 2018
  127. Published

    Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity. / Stella, Stefano; Mesa, Pablo; Thomsen, Johannes; Paul, Bijoya; Alcón, Pablo; Jensen, Simon Bo; Saligram, Bhargav; Moses, Matias Emil; Hatzakis, Nikos S.; Montoya, Guillermo.

    In: Cell, Vol. 175, No. 7, 13.12.2018, p. 1856-1871.e21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  128. Published

    GLP-1 Is a Coronary Artery Vasodilator in Humans. / Clarke, Sophie J.; Giblett, Joel P.; Yang, Lucy L.; Hubsch, Annette; Zhao, Tian; Aetesam-ur-Rahman, Muhammad; West, Nick E. J.; O'Sullivan, Michael; Figg, Nichola; Bennett, Martin; Albrechtsen, Nicolai J. Wewer; Deacon, Carolyn F.; Cheriyan, Joseph; Hoole, Stephen P.

    In: Journal of the American Heart Association, Vol. 7, No. 22, e010321, 20.11.2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  129. Published

    Integrated proximal proteomics reveals IRS2 as a determinant of cell survival in ALK-driven neuroblastoma. / Emdal, Kristina B; Pedersen, Anna-Kathrine; Bekker-Jensen, Dorte B; Lundby, Alicia; Claeys, Shana; De Preter, Katleen; Speleman, Frank; Francavilla, Chiara; Olsen, Jesper V.

    In: Science signaling, Vol. 11, No. 557, eaap9752, 20.11.2018, p. 1-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  130. Published
  131. Published

    WebCircRNA : Classifying the Circular RNA Potential of Coding and Noncoding RNA. / Pan, Xiaoyong; Xiong, Kai; Anthon, Christian; Hyttel, Poul; Freude, Kristine; Jensen, Lars Juhl; Gorodkin, Jan.

    In: Genes, Vol. 9, No. 11, 536, 06.11.2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  132. Published

    Erratum : Author Correction: 137 ancient human genomes from across the Eurasian steppes (Nature (2018) 557 7705 (369-374)). / de Barros Damgaard, Peter; Marchi, Nina; Rasmussen, Simon; Peyrot, Michael; Renaud, Gabriel; Korneliussen, Thorfinn; Moreno-Mayar, J. Victor; Pedersen, Mikkel Winther; Goldberg, Amy; Usmanova, Emma; Baimukhanov, Nurbol; Loman, Valeriy; Hedeager, Lotte; Pedersen, Anders Gorm; Nielsen, Kasper; Afanasiev, Gennady; Akmatov, Kunbolot; Aldashev, Almaz; Alpaslan, Ashyk; Baimbetov, Gabit; Bazaliiskii, Vladimir I.; Beisenov, Arman; Boldbaatar, Bazartseren; Boldgiv, Bazartseren; Dorzhu, Choduraa; Ellingvag, Sturla; Erdenebaatar, Diimaajav; Dajani, Rana; Dmitriev, Evgeniy; Evdokimov, Valeriy; Frei, Karin M.; Gromov, Andrey; Goryachev, Alexander; Hakonarson, Hakon; Hegay, Tatyana; Khachatryan, Zaruhi; Khaskhanov, Ruslan; Kitov, Egor; Kolbina, Alina; Kubatbek, Tabaldiev; Kukushkin, Alexey; Kukushkin, Igor; Lau, Nina; Margaryan, Ashot; Merkyte, Inga; Mertz, Ilya V.; Mertz, Viktor K.; Mijiddorj, Enkhbayar; Moiyesev, Vyacheslav; Mukhtarova, Gulmira; Nurmukhanbetov, Bekmukhanbet; Orozbekova, Z.; Panyushkina, Irina; Pieta, Karol; Smrčka, Vaclav; Shevnina, Irina; Logvin, Andrey; Sjogren, Karl Goran; Štolcova, Tereza; Taravella, Angela M.; Tashbaeva, Kadicha; Tkachev, Alexander; Tulegenov, Turaly; Voyakin, Dmitriy; Yepiskoposyan, Levon; Undrakhbold, Sainbileg; Varfolomeev, Victor; Weber, Andrzej; Wilson Sayres, Melissa A.; Kradin, Nikolay; Allentoft, Morten E.; Orlando, Ludovic; Nielsen, Rasmus; Sikora, Martin; Heyer, Evelyne; Kristiansen, Kristian; Willerslev, Eske.

    In: Nature, Vol. 563, No. 7729, 01.11.2018, p. E16.

    Research output: Contribution to journalComment/debateResearchpeer-review

  133. Published

    Recovery of gut microbiota of healthy adults following antibiotic exposure. / Palleja, Albert; Mikkelsen, Kristian H; Forslund, Sofia K; Kashani, Alireza; Allin, Kristine H; Nielsen, Trine; Hansen, Tue H; Liang, Suisha; Feng, Qiang; Zhang, Chenchen; Pyl, Paul Theodor; Coelho, Luis Pedro; Yang, Huanming; Wang, Jian; Typas, Athanasios; Nielsen, Morten F.; Nielsen, Henrik Bjorn; Bork, Peer; Wang, Jun; Vilsbøll, Tina; Hansen, Torben; Knop, Filip K; Arumugam, Manimozhiyan; Pedersen, Oluf.

    In: Nature Microbiology, Vol. 3, No. 11, 11.2018, p. 1255-1265.

    Research output: Contribution to journalJournal articleResearchpeer-review

  134. Published

    Erratum to : Ancient hepatitis B viruses from the Bronze Age to the Medieval period (Nature, (2018), 557, 7705, (418-423), 10.1038/s41586-018-0097-z). / Muhlemann, Barbara; Jones, Terry C.; de Barros Damgaard, Peter; Allentoft, Morten E.; Shevnina, Irina; Logvin, Andrey; Usmanova, Emma; Panyushkina, Irina P.; Boldgiv, Bazartseren; Bazartseren, Tsevel; Tashbaeva, Kadicha; Merz, Victor; Lau, Nina; Smrčka, Vaclav; Voyakin, Dmitry; Kitov, Egor; Epimakhov, Andrey; Pokutta, Dalia; Vicze, Magdolna; Price, T. Douglas; Moiseyev, Vyacheslav; Hansen, Anders J.; Orlando, Ludovic; Rasmussen, Simon; Sikora, Martin; Vinner, Lasse; Osterhaus, Albert D.M.E.; Smith, Derek J.; Glebe, Dieter; Fouchier, Ron A.M.; Drosten, Christian; Sjogren, Karl Goran; Kristiansen, Kristian; Willerslev, Eske.

    In: Nature, Vol. 562, No. 7726, 11.10.2018, p. E4.

    Research output: Contribution to journalComment/debateResearchpeer-review

  135. Published

    Ancient proteins from ceramic vessels at Çatalhöyük West reveal the hidden cuisine of early farmers. / Hendy, Jessica; Colonese, Andre C; Franz, Ingmar; Fernandes, Ricardo; Fischer, Roman; Orton, David; Lucquin, Alexandre; Spindler, Luke; Anvari, Jana; Stroud, Elizabeth; Biehl, Peter F; Speller, Camilla; Boivin, Nicole; Mackie, Meaghan; Jersie-Christensen, Rosa R; Olsen, Jesper V; Collins, Matthew J; Craig, Oliver E; Rosenstock, Eva.

    In: Nature Communications, Vol. 9, 03.10.2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  136. Published

    Præcisionskardiologi. / Haue, Amalie Dahl; Vissing, Christoffer Rasmus; Tfelt-Hansen, Jacob; Brunak, Søren; Bundgaard, Henning; Weeke, Peter E.

    In: Ugeskrift for Laeger, Vol. 180, No. 20A, 01.10.2018, p. 1851-54.

    Research output: Contribution to journalJournal articleResearchpeer-review

  137. Published

    Consistent Prediction of Mutation Effect on Drug Binding in HIV-1 Protease Using Alchemical Calculations. / Bastys, Tomas; Gapsys, Vytautas; Doncheva, Nadezhda T.; Kaiser, Rolf; De Groot, Bert L.; Kalinina, Olga V.

    In: Journal of Chemical Theory and Computation, Vol. 14, No. 7, 10.07.2018, p. 3397-3408.

    Research output: Contribution to journalJournal articleResearchpeer-review

  138. Published

    Effective lock-in strategy for proteomic analysis of corona complexes bound to amino-free ligands of gold nanoparticles. / Zhou, Mi; Tang, Min; Li, Shuiming; Peng, Li; Huang, Haojun; Fang, Qihua; Liu, Zhao; Xie, Peng; Li, Gao; Zhou, Jian.

    In: Nanoscale, Vol. 10, No. 26, 09.07.2018, p. 12413-12423.

    Research output: Contribution to journalJournal articleResearchpeer-review

  139. Published

    Assessment of the analgesic dipyrone as a possible (anti) androgenic endocrine disruptor. / Passoni, Marcella Tapias; Kristensen, Maja Norgaard; Morais, Rosana Nogueira; Woitkowiak, Claudia; Boareto, Ana Claudia; da Silva Amaral, Bruna Andreotti; Grechi, Nicole; Dalsenter, Paulo Roberto; Munkboel, Cecilie Hurup; Styrishave, Bjarne; Kristensen, David Mobjerg; Gomes, Caroline; van Ravenzwaay, Bennard; Martino-Andrade, Anderson Joel.

    In: Toxicology Letters, Vol. 285, 15.03.2018, p. 139-147.

    Research output: Contribution to journalJournal articleResearchpeer-review

  140. Published

    Familial co-occurrence of congenital heart defects follows distinct patterns. / Ellesøe, Sabrina G; Workman, Christopher T; Bouvagnet, Patrice; Loffredo, Christopher A; McBride, Kim L; Hinton, Robert B; van Engelen, Klaartje; Gertsen, Emma C; Mulder, Barbara J M; Postma, Alex V; Anderson, Robert H; Hjortdal, Vibeke E; Brunak, Søren; Larsen, Lars A.

    In: European Heart Journal, Vol. 39, No. 12, 03.2018, p. 1015–1022.

    Research output: Contribution to journalJournal articleResearchpeer-review

  141. Published

    The Ebola Virus Nucleoprotein Recruits the Host PP2A-B56 Phosphatase to Activate Transcriptional Support Activity of VP30. / Kruse, Thomas; Biedenkopf, Nadine; Hertz, Emil Peter Thrane; Dietzel, Erik; Stalmann, Gertrud; López-Méndez, Blanca; Davey, Norman E; Nilsson, Jakob; Becker, Stephan.

    In: Molecular Cell, Vol. 69, No. 1, 04.01.2018, p. 136-145.

    Research output: Contribution to journalJournal articleResearchpeer-review

  142. Published

    miRandola 2017 : a curated knowledge base of non-invasive biomarkers. / Russo, Francesco; Di Bella, Sebastiano; Vannini, Federica; Berti, Gabriele; Scoyni, Flavia; Cook, Helen V; Santos, Alberto; Nigita, Giovanni; Bonnici, Vincenzo; Laganà, Alessandro; Geraci, Filippo; Pulvirenti, Alfredo; Giugno, Rosalba; De Masi, Federico; Belling, Kirstine; Jensen, Lars J; Brunak, Søren; Pellegrini, Marco; Ferro, Alfredo.

    In: Nucleic Acids Research, Vol. 46, No. D1, 04.01.2018, p. D354-D359.

    Research output: Contribution to journalJournal articleResearchpeer-review

  143. Published

    Performance evaluation of the Q Exactive HF-X for shotgun proteomics. / Kelstrup, Christian D; Bekker-Jensen, Dorte B; Arrey, Tabiwang N; Hogrebe, Alexander; Harder, Alexander; Olsen, Jesper V.

    In: Journal of Proteome Research, Vol. 17, No. 1, 01.2018, p. 727-738.

    Research output: Contribution to journalJournal articleResearchpeer-review

  144. Published

    LocText : relation extraction of protein localizations to assist database curation. / Cejuela, Juan Miguel; Vinchurkar, Shrikant; Goldberg, Tatyana; Prabhu Shankar, Madhukar Sollepura; Baghudana, Ashish; Bojchevski, Aleksandar; Uhlig, Carsten; Ofner, André; Raharja-Liu, Pandu; Jensen, Lars Juhl; Rost, Burkhard.

    In: BMC Bioinformatics, Vol. 19, 15, 2018, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  145. Published

    A Novel Familial Cardiac Arrhythmia Syndrome with Widespread ST-Segment Depression. / Bundgård, Henning; Jøns, Christian; Lodder, Elisabeth M; Izarzugaza, Jose M.G.; Romero Herrera, Jose A; Pehrson, Steen; Tfelt-Hansen, Jacob; Ahlberg, Gustav; Olesen, Morten S; Holst, Anders G.; Wellens, Hein; de Villiers, Carin; Hastings, Robert; Stuart, Graham; Brunak, Søren; Wilde, Arthur A M; Watkins, Hugh; Christensen, Alex H.

    In: The New England Journal of Medicine, Vol. 379, No. 18, 2018, p. 1780-1781.

    Research output: Contribution to journalComment/debateResearch

  146. Published

    A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding. / Han, Wenyuan; Stella, Stefano; Zhang, Yan; Guo, Tong; Sulek, Karolina; Peng-Lundgren, Li; Montoya, Guillermo; She, Qunxin.

    In: Nucleic Acids Research, Vol. 46, No. 19, 2018, p. 10319-10330.

    Research output: Contribution to journalJournal articleResearchpeer-review

  147. Published

    A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. / Westergaard, David; Stærfeldt, Hans-Henrik; Tønsberg, Christian; Jensen, Lars Juhl; Brunak, Søren.

    In: PLoS Computational Biology, Vol. 14, No. 2, e1005962, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  148. Published

    A computational framework to integrate high-throughput "-omics" datasets for the identification of potential mechanistic links. / Pedersen, Helle Krogh; Forslund, Sofia K; Gudmundsdottir, Valborg; Petersen, Anders Østergaard; Hildebrand, Falk; Hyötyläinen, Tuulia; Nielsen, Trine; Hansen, Torben; Bork, Peer; Ehrlich, S. Dusko; Brunak, Søren; Oresic, Matej; Pedersen, Oluf; Nielsen, Henrik Bjørn.

    In: Nature Protocols, Vol. 13, No. 12, 2018, p. 2781-2800.

    Research output: Contribution to journalJournal articleResearchpeer-review

  149. Published

    A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics. / Bache, Nicolai; Geyer, Philipp E.; Bekker-Jensen, Dorte B.; Hørning, Ole; Falkenby, Lasse; Treit, Peter V.; Doll, Sophia; Paron, Igor; Müller, Johannes B.; Meier, Florian; Olsen, Jesper V.; Vorm, Ole; Mann, Matthias.

    In: Molecular and Cellular Proteomics, Vol. 17, No. 11, 2018, p. 2284-2296.

    Research output: Contribution to journalJournal articleResearchpeer-review

  150. Published

    A randomized placebo-controlled clinical trial of nicotinamide riboside in obese men : safety, insulin-sensitivity, and lipid-mobilizing effects. / Dollerup, Ole L.; Christensen, Britt; Svart, Mads; Schmidt, Mark S; Sulek, Karolina; Ringgaard, Steffen; Stødkilde-Jørgensen, Hans; Møller, Niels; Brenner, Charles; Treebak, Jonas T; Jessen, Niels.

    In: American Journal of Clinical Nutrition, Vol. 108, No. 2, 2018, p. 343-353.

    Research output: Contribution to journalJournal articleResearchpeer-review

  151. Published

    ADAM12-mediated shedding of basigin controls the subcellular localization and lactate transport of MCT4 and enhances collagen degradation in cancer cells : [Meeting Abstract}. / Albrechtsen, R.; Albrechtsen, N. J. Wewer; Kveiborg, M.

    In: International Journal of Experimental Pathology, Vol. 99, No. 6, 2018, p. A25-A25.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  152. Published

    Accurate Recycling of Parental Histones Reproduces the Histone Modification Landscape during DNA Replication. / Reverón-Gómez, Nazaret; González-Aguilera, Cristina; Stewart-Morgan, Kathleen R.; Petryk, Nataliya; Flury, Valentin; Graziano, Simona; Johansen, Jens Vilstrup; Jakobsen, Janus Schou; Alabert, Constance; Groth, Anja.

    In: Molecular Cell, Vol. 72, No. 2, 2018, p. 239-249.

    Research output: Contribution to journalJournal articleResearchpeer-review

  153. Published

    Alternative translation initiation generates a functionally distinct isoform of the stress-activated kinase MK2. / Trulley, Philipp ; Snieckute, Goda; Bekker-Jensen, Dorte B.; Menon, Manoj B; Freund, Robert ; Kotlyarov, Alexey ; Olsen, Jesper Velgaard; Diaz-Muñoz, Manuel D. ; Turner, Martin ; Bekker-Jensen, Simon Holst; Gaestel, Matthias; Tiedje, Christopher.

    In: bioRxiv, 2018.

    Research output: Contribution to journalJournal articleResearch

  154. Published

    An Integrative Approach to Virus-Host Protein-Protein Interactions. / Cook, Helen V.; Jensen, Lars Juhl.

    Computational Cell Biology. ed. / Louise von Stechow; Alberto Santos Delgado. Humana Press, 2018. p. 175-196 (Methods in Molecular Biology, Vol. 1819).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  155. Published

    Analysis of Time-Series Gene Expression Data to Explore Mechanisms of Chemical-Induced Hepatic Steatosis Toxicity. / Aguayo-Orozco, Alejandro; Bois, Frederic Yves; Brunak, Søren; Taboureau, Olivier.

    In: Frontiers in Genetics, Vol. 9, 396, 2018, p. 1-15.

    Research output: Contribution to journalJournal articleResearchpeer-review

  156. Published

    Analysis of a gene panel for targeted sequencing of colorectal cancer samples. / Jensen, Klaus Højgaard; Izarzugaza, Jose M.G.; Juncker, Agnieszka Sierakowska; Hansen, Rasmus Borup; Hansen, Torben Frøstrup; Timshel, Pascal; Blondal, Thorarinn; Jensen, Thomas Skøt; Rygaard-Hjalsted, Eske; Mouritzen, Peter; Thorsen, Michael; Wernersson, Rasmus; Nielsen, Henrik Bjørn; Jakobsen, Anders; Brunak, Søren; Sørensen, Flemming Brandt.

    In: OncoTarget, Vol. 9, No. 10, 2018, p. 9043-9060.

    Research output: Contribution to journalJournal articleResearchpeer-review

  157. Published

    Analysis of sequential hair segments reflects changes in the metabolome across the trimesters of pregnancy. / Delplancke, Thibaut D.J.; de Seymour, Jamie V.; Tong, Chao; Sulek, Karolina; Xia, Yinyin; Zhang, Hua; Han, Ting-Li; Baker, Philip N.

    In: Scientific Reports, Vol. 8, 36, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  158. Published

    Arginine Methylation by PRMT2 Controls the Functions of the Actin Nucleator Cobl. / Hou, Wenya; Nemitz, Sabine; Schopper, Simone; Nielsen, Michael Lund; Kessels, Michael Manfred; Qualmann, Britta.

    In: Developmental Cell, Vol. 45, No. 2, 2018, p. 262-275.E8.

    Research output: Contribution to journalJournal articleResearchpeer-review

  159. Published

    Benchmarking common quantification strategies for large-scale phosphoproteomics. / Hogrebe, Alexander; von Stechow, Louise; Bekker-Jensen, Dorte B.; Weinert, Brian T.; Kelstrup, Christian D.; Olsen, Jesper V.

    In: Nature Communications, Vol. 9, No. 1, 1045, 2018, p. 1-13.

    Research output: Contribution to journalJournal articleResearchpeer-review

  160. Published

    Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. / Matey-Hernandez, Maria Luisa; Danish Pan Genome Consortium ; Brunak, Søren; Izarzugaza, Jose M.G.; Sørensen, Lasse Maretty; Sibbesen, Jonas Andreas; Liu, Siyang; Belling, Kirstine G; Have, Christian Theil; Bork-Jensen, Jette; Sun, Jihua; Hansen, Torben; Krogh, Anders; Sørensen, Thorkild I.A.; Pedersen, Oluf Borbye; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten.

    In: BMC Bioinformatics, Vol. 19, 239, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  161. Published

    Blood parameters in a population of blood donors are not affected by hidradenitis suppurativa. / Theut Riis, Peter; Sigsgaard, Viktoria; Pedersen, Ole Birger; Olsen, Jonas; Rigas, Andreas Stribolt; Dinh, Khoa Manh; Brodersen, Thorsten; Ullum, Henrik; Erikstrup, Christian; Paarup, Helene Martina; Nielsen, Kaspar Rene; Petersen, Mikkel Steen; Burgdorf, Kristoffer Sølvsten; Hjalgrim, Henrik; Rostgaard, Klaus; Banasik, Karina; Jemec, Gregor.

    In: European Journal of Dermatology, Vol. 28, No. 3, 2018, p. 424-425.

    Research output: Contribution to journalJournal articleResearchpeer-review

  162. Published

    BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes. / Meier, Florian; Geyer, Philipp E.; Virreira Winter, Sebastian; Cox, Juergen; Mann, Matthias.

    In: Nature Methods, Vol. 15, No. 6, 2018, p. 440-448.

    Research output: Contribution to journalJournal articleResearchpeer-review

  163. Published

    Comorbidity of migraine with ADHD in adults. / Hansen, Thomas Folkmann; Hoeffding, Louise K.; Kogelman, Lisette; Haspang, Thilde Marie; Ullum, Henrik; Sørensen, Erik; Erikstrup, Christian; Pedersen, Ole Birger; Nielsen, Kaspar René; Hjalgrim, Henrik; Paarup, Helene M; Werge, Thomas; Burgdorf, Kristoffer.

    In: BMC Neurology, Vol. 18, No. 1, 147, 2018, p. 1-9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  164. Published

    Computational Structural Biology of S-nitrosylation of Cancer Targets. / Bignon, Emmanuelle; Allega, Maria Francesca; Lucchetta, Marta; Tiberti, Matteo; Papaleo, Elena.

    In: Frontiers in Oncology, Vol. 8, 272, 2018, p. 1-23.

    Research output: Contribution to journalReviewResearchpeer-review

  165. Published

    Constructing a cell-type resolved human liver proteome atlas : THU-034. / Niu, L.; Geyer, P.; Mann, M.

    In: Journal of Hepatology, Vol. 68, 2018, p. S138-S139.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  166. Published

    Contractile injection systems of bacteriophages and related systems. / Taylor, Nicholas M.I.; van Raaij, Mark J.; Leiman, Petr G.

    In: Molecular Microbiology, Vol. 108, No. 1, 2018, p. 6-15.

    Research output: Contribution to journalReviewResearchpeer-review

  167. Published

    Control of endothelial cell tube formation by Notch ligand intracellular domain interactions with activator protein 1 (AP-1). / Forghany, Zary; Robertson, Francesca; Lundby, Alicia; Olsen, Jesper V.; Baker, David A.

    In: The Journal of Biological Chemistry, Vol. 293, No. 4, 2018, p. 1229-1242.

    Research output: Contribution to journalJournal articleResearchpeer-review

  168. Published

    Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states. / Manolaridis, Ioannis; Jackson, Scott M.; Taylor, Nicholas M.I.; Kowal, Julia; Stahlberg, Henning; Locher, Kaspar P.

    In: Nature, Vol. 563, No. 7731, 2018, p. 426-430.

    Research output: Contribution to journalLetterResearchpeer-review

  169. Published

    DNA Repair Network Analysis Reveals Shieldin as a Key Regulator of NHEJ and PARP Inhibitor Sensitivity. / Gupta, Rajat; Somyajit, Kumar; Narita, Takeo; Maskey, Elina; Stanlie, Andre; Kremer, Magdalena; Typas, Dimitris; Lammers, Michael; Mailand, Niels; Nussenzweig, Andre; Lukas, Jiri; Choudhary, Chunaram.

    In: Cell, Vol. 173, No. 4, 2018, p. 972-988.

    Research output: Contribution to journalJournal articleResearchpeer-review

  170. Published

    DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy. / Bennetzen, Martin V.; Kosar, Martin; Bunkenborg, Jakob; Payne, Mark Ronald; Bartkova, Jirina; Lindström, Mikael S; Lukas, Jiri; Andersen, Jens S.; Bartek, Jiri; Larsen, Dorthe Helena.

    In: Cell Cycle, Vol. 17, No. 17, 2018, p. 2146-2163.

    Research output: Contribution to journalJournal articleResearchpeer-review

  171. Published

    Darkness in the Human Gene and Protein Function Space : Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000. / Sinha, Swati; Eisenhaber, Birgit; Jensen, Lars Juhl; Kalbuaji, Bharata; Eisenhaber, Frank.

    In: Proteomics, Vol. 18, No. 21-22, e1800093, 2018, p. 1-13.

    Research output: Contribution to journalJournal articleResearchpeer-review

  172. Published

    Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint. / Wild, Thomas; Budzowska, Magda; Hellmuth, Susanne; Eibes, Susana; Karemore, Gopal; Barisic, Marin; Stemmann, Olaf; Choudhary, Chunaram.

    In: Cell Reports, Vol. 25, No. 9, 2317-2328.e5, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  173. Published

    Dissecting Multi-protein Signaling Complexes by Bimolecular Complementation Affinity Purification (BiCAP). / Hastings, Jordan F; Han, Jeremy Z R; Shearer, Robert F; Kennedy, Sean P; Iconomou, Mary; Saunders, Darren N; Croucher, David R.

    In: Journal of Visualized Experiments, Vol. 136, e57109, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  174. Published

    EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification. / Virreira Winter, Sebastian; Meier, Florian; Wichmann, Christoph; Cox, Juergen; Mann, Matthias; Meissner, Felix.

    In: Nature Methods, Vol. 15, No. 7, 2018, p. 527-530.

    Research output: Contribution to journalJournal articleResearchpeer-review

  175. Published

    ENABLE 2017, the First EUROPEAN PhD and Post-Doc Symposium. Session 3 : In Vitro to In Vivo: Modeling Life in 3D. / Di Mauro, Gianmarco; Dondi, Ambra; Giangreco, Giovanni; Hogrebe, Alexander; Louer, Elja; Magistrati, Elisa; Mullari, Meeli; Turon, Gemma; Verdurmen, Wouter; Cortada, Helena Xicoy; Zivanovic, Sanja.

    In: Journal of Personalized Medicine, Vol. 8, No. 2, 20, 2018, p. 1-5.

    Research output: Contribution to journalJournal articleResearch

  176. Published

    ENABLE 2017, the First EUROPEAN PhD and Post-Doc Symposium. Session 4 : From Discovery to Cure: The Future of Therapeutics. / Di Mauro, Gianmarco; Dondi, Ambra; Giangreco, Giovanni; Hogrebe, Alexander; Louer, Elja; Magistrati, Elisa; Mullari, Meeli; Turon, Gemma; Verdurmen, Wouter; Xicoy Cortada, Helena; Zivanovic, Sanja.

    In: Medical Sciences, Vol. 6, No. 2, 42, 2018, p. 1-6.

    Research output: Contribution to journalJournal articleResearch

  177. Published

    ENABLE 2017, the First European PhD and Post-Doc Symposium. Session 1 : Building the Foundations of Biology: Synthetic and Cellular Research. / Di Mauro, Gianmarco; Dondi, Ambra; Giangreco, Giovanni; Hogrebe, Alexander; Louer, Elja; Magistrati, Elisa; Mullari, Meeli; Turon, Gemma; Verdurmen, Wouter; Xicoy Cortada, Helena; Zivanovic, Sanja.

    In: Biomolecules, Vol. 8, No. 3, 46, 2018, p. 1-6.

    Research output: Contribution to journalJournal articleResearch

  178. Published

    ENABLE 2017, the First European PhD and Post-Doc Symposium. Session 2 : The OMICS Revolution. / Di Mauro, Gianmarco; Dondi, Ambra; Giangreco, Giovanni; Hogrebe, Alexander; Louer, Elja; Magistrati, Elisa; Mullari, Meeli; Turon, Gemma; Verdurmen, Wouter; Xicoy Cortada, Helena; Zivanovic, Sanja.

    In: Biomolecules, Vol. 8, No. 4, 116, 2018, p. 1-6.

    Research output: Contribution to journalJournal articleResearch

  179. Published

    Exploring ECD on a Benchtop Q Exactive Orbitrap Mass Spectrometer. / Fort, Kyle L; Cramer, Christian N.; Voinov, Valery G; Vasil'ev, Yury V; Lopez, Nathan I; Beckman, Joseph S; Heck, Albert J R.

    In: Journal of Proteome Research, Vol. 17, No. 2, 2018, p. 926-933.

    Research output: Contribution to journalJournal articleResearchpeer-review

  180. Published

    Extreme disorder in an ultrahigh-affinity protein complex. / Borgia, Alessandro; Borgia, Madeleine B.; Bugge, Katrine Østergaard; Kissling, Vera M.; Heidarsson, Pétur O.; Fernandes, Catarina B.; Sottini, Andrea; Soranno, Andrea; Buholzer, Karin J.; Nettels, Daniel; Kragelund, Birthe Brandt; Best, Robert B.; Schuler, Benjamin.

    In: Nature, Vol. 555, 2018, p. 61-66.

    Research output: Contribution to journalJournal articleResearchpeer-review

  181. Published

    Future Perspectives on GLP-1 Receptor Agonists and GLP-1/glucagon Receptor Co-agonists in the Treatment of NAFLD. / Seghieri, Marta; Christensen, Alexander S; Andersen, Andreas; Solini, Anna; Knop, Filip K; Vilsbøll, Tina.

    In: Frontiers in Endocrinology, Vol. 9, 649, 2018, p. 1-10.

    Research output: Contribution to journalReviewResearchpeer-review

  182. Published

    Generic Workflow for Mapping of Complex Disulfide Bonds Using In-Source Reduction and Extracted Ion Chromatograms from Data-Dependent Mass Spectrometry. / Cramer, Christian N.; Kelstrup, Christian; Olsen, Jesper V.; Haselmann, Kim F.; Nielsen, Peter Kresten.

    In: Analytical Chemistry, Vol. 90, No. 13, 2018, p. 8202-8210.

    Research output: Contribution to journalJournal articleResearchpeer-review

  183. Published

    Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates. / Pan, Xiaoyong; Wenzel, Anne; Jensen, Lars Juhl; Gorodkin, Jan.

    In: PLoS ONE, Vol. 13, No. 8, e0202369, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  184. Published

    Glucagon receptor signaling in metabolic diseases. / Albrechtsen, Nicolai J. Wewer.

    In: Peptides, Vol. 100, 2018, p. 42-47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  185. Published

    Hepatic NAD+ levels and NAMPT abundance are unaffected during prolonged high-fat diet consumption in C57BL/6JBomTac mice. / Dall, Morten; Penke, Melanie; Sulek, Karolina; Matz-Soja, Madlen; Holst, Birgitte; Garten, Antje; Kiess, Wieland; Treebak, Jonas T.

    In: Molecular and Cellular Endocrinology, Vol. 473, 2018, p. 245-256.

    Research output: Contribution to journalJournal articleResearchpeer-review

  186. Published

    High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform. / Humphrey, Sean J.; Karayel, Ozge; James, David E.; Mann, Matthias.

    In: Nature Protocols (Print), Vol. 13, 2018, p. 1897-1916.

    Research output: Contribution to journalJournal articleResearchpeer-review

  187. Published

    How do CRISPR-Cas RNA-guided endonucleases cut specific DNA regions for Genome Editing? / Montoya, Guillermo.

    In: Acta Crystallographica Section A: Foundations and Advances, Vol. 74, 2018, p. E3.

    Research output: Contribution to journalConference abstract in journalResearch

  188. Published

    How well do force fields capture the strength of salt bridges in proteins? / Ahmed, Mustapha Carab Hussein; Papaleo, Elena; Lindorff-Larsen, Kresten.

    In: PeerJ, Vol. 6, 4967, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  189. Published

    Ibuprofen alters human testicular physiology to produce a state of compensated hypogonadism. / Kristensen, David Møbjerg; Desdoits-Lethimonier, Christèle; Mackey, Abigail L.; Dalgaard, Marlene Danner; De Masi, Federico; Munkbøl, Cecilie Hurup; Styrishave, Bjarne; Antignac, Jean-Philippe; Le Bizec, Bruno; Platel, Christian; Hay-Schmidt, Anders; Jensen, Tina Kold; Lesné, Laurianne; Mazaud-Guittot, Séverine; Kristiansen, Karsten; Brunak, Søren; Kjaer, Michael; Juul, Anders; Jégou, Bernard.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, No. 4, 2018, p. e715-e724.

    Research output: Contribution to journalJournal articleResearchpeer-review

  190. Published

    Ibuprofen is deleterious for the development of first trimester human fetal ovary ex vivo. / Leverrier-Penna, S.; Mitchell, R. T.; Becker, E.; Lecante, L.; Ben Maamar, M.; Homer, N.; Lavoue, V.; Kristensen, D. M.; Dejucq-Rainsford, N.; Jegou, B.; Mazaud-Guittot, S.

    In: Human Reproduction, Vol. 33, No. 3, 2018, p. 482-493.

    Research output: Contribution to journalJournal articleResearchpeer-review

  191. Published

    Identifying the druggable interactome of EWS-FLI1 reveals MCL-1 dependent differential sensitivities of Ewing sarcoma cells to apoptosis inducers. / Tsafou, Kalliopi; Katschnig, Anna Maria; Radic-Sarikas, Branka; Mutz, Cornelia Noëlle; Iljin, Kristiina; Schwentner, Raphaela; Kauer, Maximilian O; Mühlbacher, Karin; Aryee, Dave N T; Westergaard, David; Haapa-Paananen, Saija; Fey, Vidal; Superti-Furga, Giulio; Toretsky, Jeffrey; Brunak, Søren; Kovar, Heinrich.

    In: OncoTarget, Vol. 9, No. 57, 2018, p. 31018-31031.

    Research output: Contribution to journalJournal articleResearchpeer-review

  192. Published

    In vivo brain GPCR signaling elucidated by phosphoproteomics. / Liu, Jeffrey J; Sharma, Kirti; Zangrandi, Luca; Chen, Chongguang; Humphrey, Sean J; Chiu, Yi-Ting; Spetea, Mariana; Liu-Chen, Lee-Yuan; Schwarzer, Christoph; Mann, Matthias.

    In: Science (New York, N.Y.), Vol. 360, No. 6395, 2018, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  193. Published

    Increase in clinically recorded type 2 diabetes after colectomy. / Jensen, Anders B; Sørensen, Thorkild Ia; Pedersen, Oluf; Jess, Tine; Brunak, Søren; Allin, Kristine H.

    In: eLife, Vol. 7, e37420, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  194. Published
  195. Published

    Integrative network analysis highlights biological processes underlying GLP-1 stimulated insulin secretion : A DIRECT study. / Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Allebrandt, Karla Viviani; Brorsson, Caroline Anna; van Leeuwen, Nienke; Banasik, Karina; Mahajan, Anubha; Groves, Christopher J; van de Bunt, Martijn; Dawed, Adem Y; Fritsche, Andreas; Staiger, Harald; Simonis-Bik, Annemarie M C; Deelen, Joris; Kramer, Mark H H; Dietrich, Axel; Hübschle, Thomas; Willemsen, Gonneke; Häring, Hans-Ulrich; de Geus, Eco J C; Boomsma, Dorret I; Eekhoff, Elisabeth M W; Ferrer, Jorge; McCarthy, Mark I; Pearson, Ewan R; Gupta, Ramneek; Brunak, Søren; 't Hart, Leen M.

    In: P L o S One, Vol. 13, No. 1, e0189886, 2018, p. 1-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  196. Published

    Interplay Between Long Noncoding RNAs and MicroRNAs in Cancer. / Russo, Francesco; Fiscon, Giulia; Conte, Federica; Rizzo, Milena; Paci, Paola; Pellegrini, Marco.

    Computational Cell Biology. ed. / Louise von Stechow; Alberto Santos Delgado. Humana Press, 2018. p. 75-92 (Methods in Molecular Biology, Vol. 1819).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  197. Published

    Large-Scale Phosphoproteomics Reveals Shp-2 Phosphatase-Dependent Regulators of Pdgf Receptor Signaling. / Batth, Tanveer S.; Papetti, Moreno; Pfeiffer, Anamarija; Tollenaere, Maxim A.X.; Francavilla, Chiara; Olsen, Jesper V.

    In: Cell Reports, Vol. 22, No. 10, 2018, p. 2784-2796.

    Research output: Contribution to journalJournal articleResearchpeer-review

  198. Published

    Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria. / the 23andMe Research Team.

    In: PLOS Genetics, Vol. 14, No. 12, e1007813, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  199. Published

    Ligand-selective small molecule modulators of the constitutively active vGPCR US28. / Amarandi, Roxana-Maria; Luckmann, Michael; Melynis, Motiejus; Jakobsen, Mette H.; Fallah, Zohreh; Spiess, Katja; Hjorto, Gertrud M.; Pui, Aurel; Frimurer, Thomas M.; Rosenkilde, Mette M.

    In: European Journal of Medicinal Chemistry, Vol. 155, 2018, p. 244-254.

    Research output: Contribution to journalJournal articleResearchpeer-review

  200. Published

    Limits for resolving isobaric tandem mass tag reporter ions using phase constrained spectrum deconvolution. / Kelstrup, Christian D; Aizikov, Konstantin; Batth, Tanveer S; Kreutzman, Arne; Grinfeld, Dmitry; Lange, Oliver; Mourad, Daniel; Makarov, Alexander A.; Olsen, Jesper V.

    In: Journal of Proteome Research, Vol. 17, No. 11, 2018, p. 4008-4016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  201. Published

    MCM2 promotes symmetric inheritance of modified histones during DNA replication. / Petryk, Nataliya; Dalby, Maria; Wenger, Alice; Stromme, Caroline B.; Strandsby, Anne; Andersson, Robin; Groth, Anja.

    In: Science, Vol. 361, No. 6409, 2018, p. 1389-1392.

    Research output: Contribution to journalJournal articleResearchpeer-review

  202. Published

    Minimal information for studies of extracellular vesicles 2018 (MISEV2018) : a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. / Théry, Clotilde; Witwer, Kenneth W; Aikawa, Elena; Alcaraz, Maria Jose; Anderson, Johnathon D; Andriantsitohaina, Ramaroson; Antoniou, Anna; Arab, Tanina; Archer, Fabienne; Atkin-Smith, Georgia K; Ayre, D Craig; Bach, Jean-Marie; Bachurski, Daniel; Baharvand, Hossein; Balaj, Leonora; Baldacchino, Shawn; Bauer, Natalie N; Baxter, Amy A; Bebawy, Mary; Beckham, Carla; Bedina Zavec, Apolonija; Benmoussa, Abderrahim; Berardi, Anna C; Bergese, Paolo; Bielska, Ewa; Blenkiron, Cherie; Bobis-Wozowicz, Sylwia; Boilard, Eric; Boireau, Wilfrid; Bongiovanni, Antonella; Borràs, Francesc E; Bosch, Steffi; Boulanger, Chantal M; Breakefield, Xandra; Breglio, Andrew M; Brennan, Meadhbh Á; Brigstock, David R; Brisson, Alain; Broekman, Marike Ld; Bromberg, Jacqueline F; Bryl-Górecka, Paulina; Buch, Shilpa; Buck, Amy H; Burger, Dylan; Busatto, Sara; Buschmann, Dominik; Jørgensen, Malene Møller; Jacobsen, Søren; Nejsum, Peter; Østergaard, Ole; Xu, Jing.

    In: Journal of Extracellular Vesicles, Vol. 7, No. 1, 1535750, 2018, p. 1-47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  203. Published

    Molecular basis of Tousled-Like Kinase 2 activation. / Mortuza, Gulnahar B.; Hermida, Dario; Pedersen, Anna-Kathrine; Segura-Bayona, Sandra; López-Méndez, Blanca; Redondo, Pilar; Rüther, Patrick; Pozdnyakova, Irina; Garrote, Ana M; Muñoz, Inés G; Villamor-Payà, Marina; Jauset, Cristina; Olsen, Jesper V.; Stracker, Travis H.; Montoya, Guillermo.

    In: Nature Communications, Vol. 9, No. 1, 2535, 2018, p. 2535.

    Research output: Contribution to journalJournal articleResearchpeer-review

  204. Published

    Molecular genetic overlap between migraine and major depressive disorder. / Yang, Yuanhao; Zhao, Huiying; Boomsma, Dorret I.; Ligthart, Lannie; Belin, Andrea C.; Smith, George Davey; Esko, Tonu; Freilinger, Tobias M.; Hansen, Thomas Folkmann; Ikram, M. Arfan; Kallela, Mikko; Kubisch, Christian; Paraskevi, Christofidou; Strachan, David P.; Wessman, Maija; Gormley, Padhraig; Anttila, Verneri; Winsvold, Bendik S.; Palta, Priit; Esko, Tonu; Pers, Tune H.; Farh, Kai How; Cuenca-Leon, Ester; Muona, Mikko; Furlotte, Nicholas A.; Kurth, Tobias; Ingason, Andres; McMahon, George; Ligthart, Lannie; Terwindt, Gisela M.; Kallela, Mikko; Freilinger, Tobias M.; Ran, Caroline; Gordon, Scott G.; Stam, Anine H.; Steinberg, Stacy; Borck, Guntram; Koiranen, Markku; Quaye, Lydia; Adams, Hieab H.H.; Lehtimäki, Terho; Sarin, Antti Pekka; Wedenoja, Juho; Hinds, David A.; Buring, Julie E.; Schürks, Markus; Christensen, Anne Francke; Hansen, Thomas Folkmann; Werge, Thomas; Olesen, Jes.

    In: European Journal of Human Genetics, Vol. 26, No. 8, 2018, p. 1202-1216.

    Research output: Contribution to journalJournal articleResearchpeer-review

  205. Published

    Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer. / Coscia, Fabian; Lengyel, Ernst; Duraiswamy, Jaikumar; Ashcroft, Bradley; Bassani-Sternberg, Michal; Wierer, Michael; Johnson, Alyssa; Wroblewski, Kristen; Montag, Anthony; Yamada, S Diane; López-Méndez, Blanca; Nilsson, Jakob; Mund, Andreas; Mann, Matthias; Curtis, Marion.

    In: Cell, Vol. 175, No. 1, 2018, p. 159-170.e16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  206. Published

    Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability. / Galanos, Panagiotis; Pappas, George; Polyzos, Alexander; Kotsinas, Athanassios; Svolaki, Ioanna; Giakoumakis, Nickolaos N; Glytsou, Christina; Pateras, Ioannis S; Swain, Umakanta; Souliotis, Vassilis L; Georgakilas, Alexandros G; Geacintov, Nicholas; Scorrano, Luca; Lukas, Claudia; Lukas, Jiri; Livneh, Zvi; Lygerou, Zoi; Chowdhury, Dipanjan; Sørensen, Claus Storgaard; Bartek, Jiri; Gorgoulis, Vassilis G.

    In: Genome Biology (Online Edition), Vol. 19, 37, 2018, p. 1-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  207. Published

    NOTCH3 inactivation increases triple negative breast cancer sensitivity to gefitinib by promoting EGFR tyrosine dephosphorylation and its intracellular arrest. / Diluvio, Giulia; Del Gaudio, Francesca; Giuli, Maria Valeria; Franciosa, Giulia; Giuliani, Eugenia; Palermo, Rocco; Besharat, Zein Mersini; Pignataro, Maria Gemma; Vacca, Alessandra; d'Amati, Giulia; Maroder, Marella; Talora, Claudio; Capalbo, Carlo; Bellavia, Diana; Checquolo, Saula.

    In: Critical Reviews in Oncogenesis, Vol. 7, 42, 2018, p. 1-15.

    Research output: Contribution to journalJournal articleResearchpeer-review

  208. Published

    Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer. / Meier, Florian; Brunner, Andreas-David; Koch, Scarlet; Koch, Heiner; Lubeck, Markus; Krause, Michael; Goedecke, Niels; Decker, Jens; Kosinski, Thomas; Park, Melvin A; Bache, Nicolai; Hoerning, Ole; Cox, Jürgen; Räther, Oliver; Mann, Matthias.

    In: Molecular and Cellular Proteomics, Vol. 17, No. 12, 2018, p. 2534-2545.

    Research output: Contribution to journalJournal articleResearchpeer-review

  209. Published

    Opinion : Advocating for science progress as a human right. / Porsdam Mann, S; Donders, Y; Mitchell, C; Bradley, V J; Chou, M F; Mann, M.; Church, G; Porsdam, H.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, No. 43, 2018, p. 10820-10823.

    Research output: Contribution to journalComment/debateCommunication

  210. Published

    Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. / Krahmer, Natalie; Najafi, Bahar; Schueder, Florian; Quagliarini, Fabiana; Steger, Martin; Seitz, Susanne; Kasper, Robert; Salinas, Favio; Cox, Jürgen; Uhlenhaut, Nina Henriette; Walther, Tobias Christian; Jungmann, Ralf; Zeigerer, Anja; Borner, Georg Heinz Helmut; Mann, Matthias.

    In: Developmental Cell, Vol. 47, No. 2, 2018, p. 205-221.E7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  211. Published

    PKD Phosphorylation as Novel Pathway of KV11.1 Regulation. / Steffensen, Annette Buur; Bomholtz, Sofia Hammami; Andersen, Martin Nybo; Olsen, Jesper Velgaard; Mutsaers, N.; Lundegaard, Pia Rengtved; Lundby, Alicia; Schmitt, Nicole.

    In: Cellular Physiology and Biochemistry, Vol. 47, No. 4, 2018, p. 1742-1750.

    Research output: Contribution to journalJournal articleResearchpeer-review

  212. Published

    Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting. / Mackie, Meaghan Emma; Rüther, Patrick Leopold; Samodova, Diana; Di Gianvincenzo, Fabiana; Granzotto, Clara; Lyon, David; Peggie, David A.; Howard, Helen; Harrison, Lynne; Jensen, Lars Juhl; Olsen, Jesper Velgaard; Cappellini, Enrico.

    In: Angewandte Chemie (International ed. in English), Vol. 57, No. 25, 2018, p. 7369-7374.

    Research output: Contribution to journalJournal articleResearchpeer-review

  213. Published

    Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery. / Wewer Albrechtsen, Nicolai J; Geyer, Philipp E; Doll, Sophia; Treit, Peter V; Bojsen-Møller, Kirstine N; Martinussen, Christoffer; Jørgensen, Nils B; Torekov, Signe S; Meier, Florian; Niu, Lili; Santos, Alberto; Keilhauer, Eva C; Holst, Jens J; Madsbad, Sten; Mann, Matthias.

    In: Cell Systems, Vol. 7, No. 6, 2018, p. 601-612.

    Research output: Contribution to journalJournal articleResearchpeer-review

  214. Published

    Polyester based nanovehicles for siRNA delivery. / Xu, Zejun; Wang, Danyang; Cheng, Yanqin; Yang, Mingshi; Wu, Lin-Ping.

    In: Materials Science and Engineering C: Materials for Biological Applications, Vol. 92, 2018, p. 1006-1015.

    Research output: Contribution to journalReviewResearchpeer-review

  215. Published

    Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. / Zepeda Mendoza, Marie Lisandra; Roggenbuck, Michael; Manzano Vargas, Karla; Hansen, Lars Hestbjerg; Brunak, Søren; Gilbert, M. Thomas P.; Sicheritz-Pontén, Thomas.

    In: Acta Veterinaria Scandinavica, Vol. 60, No. 1, 61, 2018, p. 1-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  216. Published

    Proteomic evidence of dietary sources in ancient dental calculus. / Hendy, Jessica; Warinner, Christina; Bouwman, Abigail; Collins, Matthew James; Fiddyment, Sarah; Fischer, Roman; Hagan, Richard; Hofman, Courtney A; Holst, Malin; Chaves, Eros; Klaus, Lauren; Larson, Greger; Mackie, Meaghan; McGrath, Krista; Mundorff, Amy Z; Radini, Anita; Rao, Huiyun; Trachsel, Christian; Velsko, Irina M; Speller, Camilla F.

    In: Proceedings of the Royal Society B: Biological Sciences, Vol. 285, No. 1883, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  217. Published

    Proteomics Analysis of Skeletal Muscle from Leptin-Deficient ob/ob Mice Reveals Adaptive Remodeling of Metabolic Characteristics and Fiber Type Composition. / Schönke, Milena; Björnholm, Marie; Chibalin, Alexander V.; Zierath, Juleen R.; Deshmukh, Atul S.

    In: Proteomics, Vol. 18, No. 5-6, 2018, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  218. Published

    Proteomics for blood biomarker exploration of severe mental illness : pitfalls of the past and potential for the future. / Comes, Ashley L.; Papiol, Sergi; Mueller, Thorsten; Geyer, Philipp E.; Mann, Matthias; Schulze, Thomas G.

    In: Translational Psychiatry, Vol. 8, 160, 2018, p. 1-15.

    Research output: Contribution to journalReviewResearchpeer-review

  219. Published

    Proteomics in the Study of Liver Diseases. / Niu, Lili; Geyer, Philipp E. ; Mann, Matthias.

    The Human Gut-Liver-Axis in Health and Disease. ed. / Aleksander Krag; Torben Hansen. Springer, 2018. p. 165-193.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  220. Published

    Quality control for plasma and cerebrospinal fluid samples using mass spectrometry. / Skotte, Nels H.; Geyer, Phillip E.; Steger, Martin; Treit, Peter V.; Voytik, Eugenia; Hellem, Marie N.; Nielsen, Jørgen E.; Mann, Matthias.

    In: Journal of Neurology, Neurosurgery and Psychiatry, Vol. 89, 2018, p. A31-A32.

    Research output: Contribution to journalConference abstract in journalResearch

  221. Published

    Quantitative Proteomic Analysis Reveals Synaptic Dysfunction in the Amygdala of Rats Susceptible to Chronic Mild Stress. / Zhou, Mi; Liu, Zhao; Yu, Jia; Li, Shuiming; Tang, Min; Zeng, Li; Wang, Haiyang; Xie, Hong; Peng, Li; Huang, Haojun; Zhou, Chanjuan; Xie, Peng; Zhou, Jian.

    In: Neuroscience, Vol. 376, 2018, p. 24-39.

    Research output: Contribution to journalJournal articleResearchpeer-review

  222. Published

    Quantitative metaproteomics of medieval dental calculus reveals individual oral health status. / Jersie-Christensen, Rosa R; Lanigan, Liam T; Lyon, David; Mackie, Meaghan; Belstrøm, Daniel; Kelstrup, Christian D; Fotakis, Anna K; Willerslev, Eske; Lynnerup, Niels; Jensen, Lars J; Cappellini, Enrico; Olsen, Jesper V.

    In: Nature Communications, Vol. 9, 4744, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  223. Published

    Rapid proteomic analysis for solid tumors reveals LSD1 as a drug target in an end-stage cancer patient. / Doll, Sophia; Kriegmair, Maximilian C.; Santos, Alberto; Wierer, Michael; Coscia, Fabian; Neil, Helen Michele; Porubsky, Stefan; Geyer, Philipp E.; Mund, Andreas; Nuhn, Philipp; Mann, Matthias.

    In: Molecular Oncology, Vol. 12, No. 8, 2018, p. 1296-1307.

    Research output: Contribution to journalJournal articleResearchpeer-review

  224. Published

    Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation. / Ahlberg, Gustav; Refsgaard, Lena; Lundegaard, Pia R; Andreasen, Laura; Ranthe, Mattis F; Linscheid, Nora; Nielsen, Jonas B; Melbye, Mads; Haunsø, Stig; Sajadieh, Ahmad; Camp, Lu; Olesen, Søren-Peter; Rasmussen, Simon; Lundby, Alicia; Ellinor, Patrick T; Holst, Anders G; Svendsen, Jesper H; Olesen, Morten S.

    In: Nature Communications, Vol. 9, No. 1, 4316, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  225. Published

    Regulation of eukaryotic elongation factor 1 alpha (eEF1A) by dynamic lysine methylation. / Jakobsson, Magnus E.; Małecki, Jędrzej; Falnes, Pål Ø.

    In: RNA biology, Vol. 15, No. 3, 2018, p. 314-319.

    Research output: Contribution to journalJournal articleResearchpeer-review

  226. Published

    Retinoic Acid Signaling in Thymic Epithelial Cells Regulates Thymopoiesis. / Wendland, Kerstin; Niss, Kristoffer; Kotarsky, Knut; Wu, Nikita Yeuk Hung; White, Andrea J.; Jendholm, Lars Johan; Rivollier, Aymeric; Izarzugaza, Jose M.G.; Brunak, Søren; Holländer, Georg A; Anderson, Graham; Sitnik, Katarzyna M.; Agace, William W.

    In: Journal of Immunology, Vol. 201, No. 2, 2018, p. 524-532.

    Research output: Contribution to journalJournal articleResearchpeer-review

  227. Published

    SPOP promotes transcriptional expression of DNA repair and replication factors to prevent replication stress and genomic instability. / Hjorth-Jensen, Kim; Maya-Mendoza, Apolinar; Dalgaard, Nanna; Sigurðsson, Jón O; Bartek, Jiri; Iglesias-Gato, Diego; Olsen, Jesper V.; Flores-Morales, Amilcar.

    In: Nucleic Acids Research, Vol. 46, No. 18, 2018, p. 9484-9495.

    Research output: Contribution to journalJournal articleResearchpeer-review

  228. Published

    STK3 is a therapeutic target for a subset of acute myeloid leukemias. / Camgoz, Aylin; Paszkowski-Rogacz, Maciej; Satpathy, Shankha; Wermke, Martin; Hamann, Martin V.; von Bonin, Malte; Choudhary, Chunaram; Knapp, Stefan; Buchholz, Frank.

    In: OncoTarget, Vol. 9, No. 39, 2018, p. 25458-25473.

    Research output: Contribution to journalJournal articleResearchpeer-review

  229. Published

    Site-specific characterization of endogenous SUMOylation across species and organs. / Hendriks, Ivo A.; Lyon, David; Su, Dan; Skotte, Niels H; Daniel, Jeremy A; Jensen, Lars J.; Nielsen, Michael L.

    In: Nature Communications, Vol. 9, 2456, 2018, p. 1-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  230. Published

    Skeletal muscle O-GlcNAc transferase is important for muscle energy homeostasis and whole-body insulin sensitivity. / Shi, Hao; Munk, Alexander; Nielsen, Thomas Svava; Daughtry, Morgan R; Larsson, Louise; Li, Shize; Høyer, Kasper F; Geisler, Hannah W; Sulek, Karolina; Kjøbsted, Rasmus; Fisher, Taylor; Andersen, Marianne M; Shen, Zhengxing; Hansen, Ulrik K; England, Eric M; Cheng, Zhiyong; Højlund, Kurt; Wojtaszewski, Jørgen; Yang, Xiaoyong; Hulver, Matthew W; Helm, Richard F; Treebak, Jonas Thue; Gerrard, David E.

    In: Molecular Metabolism, Vol. 11, 2018, p. 160-177.

    Research output: Contribution to journalJournal articleResearchpeer-review

  231. Published

    Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation. / Larsen, Sara C.; Hendriks, Ivo A.; Lyon, David; Jensen, Lars J.; Nielsen, Michael L.

    In: Cell Reports, Vol. 24, No. 9, 2018, p. 2493-2505.

    Research output: Contribution to journalJournal articleResearchpeer-review

  232. Published

    TISSUES 2.0 : an integrative web resource on mammalian tissue expression. / Palasca, Oana; Santos, Alberto; Stolte, Christian; Gorodkin, Jan; Jensen, Lars Juhl.

    In: Database, Vol. 2018, No. 1, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  233. Published

    The ISCB Student Council Internship Program : Expanding computational biology capacity worldwide. / Anupama, Jigisha; Francescatto, Margherita; Rahman, Farzana; Fatima, Nazeefa; DeBlasio, Dan; Shanmugam, Avinash Kumar; Satagopam, Venkata; Santos, Alberto; Kolekar, Pandurang; Michaut, Magali; Guney, Emre.

    In: PLOS Computational Biology, Vol. 14, No. 1, e1005802, 2018, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  234. Published

    The Interplay of Non-coding RNAs and X Chromosome Inactivation in Human Disease. / Russo, Francesco; De Masi, Federico; Brunak, Søren; Belling, Kirstine G.

    Systems Biology. ed. / Nikolaus Rajewsky; Stefan Jurga; Jan Barciszewski. Springer, 2018. p. 229-238 (RNA Technologies).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  235. Published

    The closed form of Mad2 is bound to Mad1 and Cdc20 at unattached kinetochores. / Zhang, Gang; Nilsson, Jakob.

    In: Cell Cycle, Vol. 17, No. 9, 2018, p. 1087-1091.

    Research output: Contribution to journalJournal articleResearchpeer-review

  236. Published

    The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates. / Jakobsson, Magnus E.; Małecki, Jędrzej M; Halabelian, Levon; Nilges, Benedikt S; Pinto, Rita; Kudithipudi, Srikanth; Munk, Stephanie; Davydova, Erna; Zuhairi, Fawzi R; Arrowsmith, Cheryl H; Jeltsch, Albert; Leidel, Sebastian A; Olsen, Jesper V.; Falnes, Pål Ø.

    In: Nature Communications, Vol. 9, No. 1, 3411, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  237. Published

    The governance structure for data access in the DIRECT consortium : an innovative medicines initiative (IMI) project. / Teare, Harriet J A; de Masi, Federico; Banasik, Karina; Barnett, Anna; Herrgard, Sanna; Jablonka, Bernd; Postma, Jacqueline W M; McDonald, Timothy J; Forgie, Ian; Chmura, Piotr J; Rydzka, Emil K; Gupta, Ramneek; Brunak, Søren; Pearson, Ewan; Kaye, Jane.

    In: Life Sciences, Society and Policy, Vol. 14, No. 1, 20, 2018, p. 1-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  238. Published

    The protein kinase SIK downregulates the polarity protein Par3. / Vanlandewijck, Michael; Dadras, Mahsa Shahidi; Lomnytska, Marta; Mahzabin, Tanzila; Miller, Martin Lee; Busch, Christer; Brunak, Søren; Heldin, Carl-Henrik; Moustakas, Aristidis.

    In: OncoTarget, Vol. 9, No. 5, 2018, p. 5716-5735.

    Research output: Contribution to journalJournal articleResearchpeer-review

  239. Published

    The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications. / Iglesias-Gato, Diego; Thysell, Elin; Tyanova, Stefka; Crnalic, Sead; Santos, Alberto; Lima, Thiago S.; Geiger, Tamar; Cox, Juergen; Widmark, Anders; Bergh, Anders; Mann, Matthias; Flores-Morales, Amilcar; Wikström, Pernilla.

    In: Clinical Cancer Research, Vol. 24, No. 21, 2018, p. 5433-5444.

    Research output: Contribution to journalJournal articleResearchpeer-review

  240. Published

    Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome. / Weinert, Brian T.; Narita, Takeo; Satpathy, Shankha; Srinivasan, Balaji; Hansen, Bogi K; Schölz, Christian; Hamilton, William B.; Zucconi, Beth E; Wang, Wesley W; Liu, Wenshe R; Brickman, Joshua M; Kesicki, Edward A; Lai, Albert; Bromberg, Kenneth D; Cole, Philip A; Choudhary, Chunaram.

    In: Cell, Vol. 174, No. 1, 2018, p. 231-244.e12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  241. Published

    Toppar : an interactive browser for viewing association study results. / Juliusdottir, Thorhildur; Banasik, Karina; Robertson, Neil R.; Mott, Richard; McCarthy, Mark I.

    In: Bioinformatics, Vol. 34, No. 11, 2018, p. 1922-1924.

    Research output: Contribution to journalJournal articleResearchpeer-review

  242. Published

    Tousled-like kinases stabilize replication forks and show synthetic lethality with checkpoint and PARP inhibitors. / Lee, Sung-Bau; Segura-Bayona, Sandra; Villamor-Payà, Marina; Saredi, Giulia; Todd, Matthew A M; Attolini, Camille Stephan-Otto; Chang, Ting-Yu; Stracker, Travis H; Groth, Anja.

    In: Science Advances, Vol. 4, No. 8, eaat4985, 2018, p. 1-14.

    Research output: Contribution to journalJournal articleResearchpeer-review

  243. Published

    Towards a coordination of European activities to diagnose and manage insect diseases in production facilities. / Eilenberg, Jørgen; van Oers, M.M.; Jensen, Anders Boeck; Lecocq, Antoine; Maciel Vergara, Gabriela; Andrade Santacoloma, Luna Paola; van Loon, J.J.A.; Hesketh, H.

    In: Journal of Insects as Food and Feed, Vol. 4, No. 3, 2018, p. 157-166.

    Research output: Contribution to journalJournal articleResearchpeer-review

  244. Published

    Toxicogenomics directory of rat hepatotoxicants in vivo and in cultivated hepatocytes. / Grinberg, Marianna; Stöber, Regina M; Albrecht, Wiebke; Edlund, Karolina; Schug, Markus; Godoy, Patricio; Cadenas, Cristina; Marchan, Rosemarie; Lampen, Alfonso; Braeuning, Albert; Buhrke, Thorsten; Leist, Marcel; Oberemm, Axel; Hellwig, Birte; Kamp, Hennicke; Gardner, Iain; Escher, Sylvia; Taboureau, Olivier; Aguayo-Orozco, Alejandro; Sachinidis, Agapios; Ellinger-Ziegelbauer, Heidrun; Rahnenführer, Jörg; Hengstler, Jan G.

    In: Archives of Toxicology, Vol. 92, No. 12, 2018, p. 3517-3533.

    Research output: Contribution to journalJournal articleResearchpeer-review

  245. Published

    Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells. / Winge, Sofia Boeg; Dalgaard, Marlene Danner; Belling, Kirstine G; Jensen, Jacob Malte; Nielsen, John Erik; Aksglaede, Lise; Schierup, Mikkel Heide; Brunak, Søren; Skakkebæk, Niels Erik; Juul, Anders; Rajpert-De Meyts, Ewa; Almstrup, Kristian.

    In: Cell Death & Disease, Vol. 9, No. 6, 586, 2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  246. Published

    Truncated SALL1 Impedes Primary Cilia Function in Townes-Brocks Syndrome. / Bozal-Basterra, Laura; Martín-Ruíz, Itziar; Pirone, Lucia; Liang, Yinwen; Sigurðsson, Jón Otti; Gonzalez-Santamarta, Maria; Giordano, Immacolata; Gabicagogeascoa, Estibaliz; de Luca, Angela; Rodríguez, Jose A; Wilkie, Andrew O M; Kohlhase, Jürgen; Eastwood, Deborah; Yale, Christopher; Olsen, Jesper V.; Rauchman, Michael; Anderson, Kathryn V; Sutherland, James D; Barrio, Rosa.

    In: American Journal of Human Genetics, Vol. 102, No. 2, 2018, p. 249-265.

    Research output: Contribution to journalJournal articleResearchpeer-review

  247. Published

    UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites. / Akimov, Vyacheslav; Barrio-Hernandez, Inigo; Hansen, Sten V.F.; Hallenborg, Philip; Pedersen, Anna-Kathrine; Bekker-Jensen, Dorte B.; Puglia, Michele; Christensen, Stine D K; Vanselow, Jens T.; Nielsen, Mogens M.; Kratchmarova, Irina; Kelstrup, Christian D.; Olsen, Jesper V.; Blagoev, Blagoy.

    In: Nature Structural & Molecular Biology, Vol. 25, 2018, p. 631-640.

    Research output: Contribution to journalJournal articleResearchpeer-review

  248. Published

    Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. / Prieto, Jesús; Redondo, Pilar; López-Méndez, Blanca; D'Abramo, Marco; Merino, Nekane; Blanco, Francisco J; Duchateau, Phillipe; Montoya, Guillermo; Molina, Rafael.

    In: Scientific Reports, Vol. 8, 10286, 2018, p. 1-9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  249. Published

    Unexplored therapeutic opportunities in the human genome. / Oprea, Tudor I; Bologa, Cristian G; Brunak, Søren; Campbell, Allen; Gan, Gregory N; Gaulton, Anna; Gomez, Shawn M; Guha, Rajarshi; Hersey, Anne; Holmes, Jayme; Jadhav, Ajit; Jensen, Lars Juhl; Johnson, Gary L; Karlson, Anneli; Leach, Andrew R; Ma'ayan, Avi; Malovannaya, Anna; Mani, Subramani; Mathias, Stephen L; McManus, Michael T; Meehan, Terrence F; von Mering, Christian; Muthas, Daniel; Nguyen, Dac-Trung; Overington, John P; Papadatos, George; Qin, Jun; Reich, Christian; Roth, Bryan L; Schürer, Stephan C; Simeonov, Anton; Sklar, Larry A; Southall, Noel; Tomita, Susumu; Tudose, Ilinca; Ursu, Oleg; Vidovic, Dušica; Waller, Anna; Westergaard, David; Yang, Jeremy J; Zahoránszky-Köhalmi, Gergely.

    In: Nature Reviews. Drug Discovery, Vol. 17, No. 5, 2018, p. 317-332.

    Research output: Contribution to journalReviewResearchpeer-review

  250. Published

    Viruses.STRING : A Virus-Host Protein-Protein Interaction Database. / Cook, Helen Victoria; Doncheva, Nadezhda Tsankova; Szklarczyk, Damian; von Mering, Christian; Jensen, Lars Juhl.

    In: Viruses, Vol. 10, No. 10, 519, 2018, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  251. Published

    ZUFSP Deubiquitylates K63-Linked Polyubiquitin Chains to Promote Genome Stability. / Haahr, Peter; Borgermann, Nikoline; Guo, Xiaohu; Typas, Dimitris; Achuthankutty, Divya; Hoffmann, Saskia; Shearer, Robert; Sixma, Titia K; Mailand, Niels.

    In: Molecular Cell, Vol. 70, No. 1, 2018, p. 165-174.

    Research output: Contribution to journalJournal articleResearchpeer-review

  252. Published

    p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage. / Borisova, Marina E; Voigt, Andrea; Tollenaere, Maxim A.X.; Sahu, Sanjeeb Kumar; Juretschke, Thomas; Kreim, Nastasja; Mailand, Niels; Choudhary, Chunaram; Bekker-Jensen, Simon; Akutsu, Masato; Wagner, Sebastian A; Beli, Petra.

    In: Nature Communications, Vol. 9, 1017, 2018, p. 1-16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  253. 2017
  254. Published

    lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1. / Chakraborty, Debojyoti; Paszkowski-Rogacz, Maciej; Berger, Nicolas; Ding, Li; Mircetic, Jovan; Fu, Jun; Iesmantavicius, Vytautas; Choudhary, Chunaram; Anastassiadis, Konstantinos; Stewart, A Francis; Buchholz, Frank.

    In: Cell Reports, Vol. 21, No. 11, 12.12.2017, p. 3012-3021.

    Research output: Contribution to journalJournal articleResearchpeer-review

  255. Published

    Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI. / Alba, Josephine; Marcaida, Maria Jose; Prieto, Jesus; Montoya, Guillermo; Molina, Rafael; D'Abramo, Marco.

    In: Journal of Computer - Aided Molecular Design, Vol. 31, No. 12, 12.2017, p. 1063-1072.

    Research output: Contribution to journalJournal articleResearchpeer-review

  256. Published

    Region and cell-type resolved quantitative proteomic map of the human heart. / Doll, Sophia; Dreßen, Martina; Geyer, Philipp E; Itzhak, Daniel N; Braun, Christian; Doppler, Stefanie A; Meier, Florian; Deutsch, Marcus-Andre; Lahm, Harald; Lange, Rüdiger; Krane, Markus; Mann, Matthias.

    In: Nature Communications, Vol. 8, No. 1, 1469, 13.11.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  257. Published

    Redox-sensitive alteration of replisome architecture safeguards genome integrity. / Somyajit, Kumar; Gupta, Rajat; Sedlackova, Hana; Neelsen, Kai John; Ochs, Fena; Rask, Maj-Britt; Choudhary, Chunaram; Lukas, Jiri.

    In: Science, Vol. 358, No. 6364, 10.11.2017, p. 797-802.

    Research output: Contribution to journalJournal articleResearchpeer-review

  258. Published

    Drug target ontology to classify and integrate drug discovery data. / Lin, Yu; Mehta, Saurabh; Küçük-McGinty, Hande; Turner, John Paul; Vidovic, Dusica; Forlin, Michele; Koleti, Amar; Nguyen, Dac-Trung; Jensen, Lars Juhl; Guha, Rajarshi; Mathias, Stephen L; Ursu, Oleg; Stathias, Vasileios; Duan, Jianbin; Nabizadeh, Nooshin; Chung, Caty; Mader, Christopher; Visser, Ubbo; Yang, Jeremy J; Bologa, Cristian G; Oprea, Tudor I; Schürer, Stephan C.

    In: Journal of Biomedical Semantics, Vol. 8, No. 1, 50, 09.11.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  259. Published

    A Primer on Concepts and Applications of Proteomics in Neuroscience. / Hosp, Fabian; Mann, Matthias.

    In: Neuron, Vol. 96, No. 3, 01.11.2017, p. 558-571.

    Research output: Contribution to journalReviewResearchpeer-review

  260. Published

    Adverse outcome pathways : opportunities, limitations and open questions. / Leist, Marcel; Ghallab, Ahmed; Graepel, Rabea; Marchan, Rosemarie; Hassan, Reham; Bennekou, Susanne Hougaard; Limonciel, Alice; Vinken, Mathieu; Schildknecht, Stefan; Waldmann, Tanja; Danen, Erik; van Ravenzwaay, Ben; Kamp, Hennicke; Gardner, Iain; Godoy, Patricio; Bois, Frederic Y; Braeuning, Albert; Reif, Raymond; Oesch, Franz; Drasdo, Dirk; Höhme, Stefan; Schwarz, Michael; Hartung, Thomas; Braunbeck, Thomas; Beltman, Joost; Vrieling, Harry; Sanz, Ferran; Forsby, Anna; Gadaleta, Domenico; Fisher, Ciarán; Kelm, Jens; Fluri, David; Ecker, Gerhard; Zdrazil, Barbara; Terron, Andrea; Jennings, Paul; van der Burg, Bart; Dooley, Steven; Meijer, Annemarie H; Willighagen, Egon; Martens, Marvin; Evelo, Chris; Mombelli, Enrico; Taboureau, Olivier; Mantovani, Alberto; Hardy, Barry; Koch, Bjorn; Escher, Sylvia; van Thriel, Christoph; Cadenas, Cristina; Kroese, D; van de Water, Bob; Hengstler, Jan G.

    In: Archives of Toxicology, Vol. 91, No. 11, 11.2017, p. 3477-3505.

    Research output: Contribution to journalJournal articleResearchpeer-review

  261. Published

    Circulating Glucagon 1-61 Regulates Blood Glucose by Increasing Insulin Secretion and Hepatic Glucose Production. / Albrechtsen, Nicolai J. Wewer; Kuhre, Rune E.; Hornburg, Daniel; Jensen, Christian Z.; Hornum, Mads; Dirksen, Carsten; Svane, Maria; Gasbjerg, Laerke S.; Jorgensen, Nils B.; Gabe, Maria N.; Balk-Moller, Emilie; Albrechtsen, Reidar; Winther-Sorensen, Marie; Galsgaard, Katrine D.; Meissner, Felix; Jorsal, Tina; Lund, Asger; Vilsboll, Tina; Eliasen, Rasmus; Bojsen-Moller, Kirstine N.; Idorn, Thomas; Deacon, Carolyn F.; Knop, Filip K.; Rosenkilde, Mette M.; Hartmann, Bolette; Feldt-Rasmussen, Bo; Mann, Matthias; Madsbad, Sten; Holst, Jens J.

    In: Cell Reports, Vol. 21, No. 6, 11.2017, p. 1452-1460.

    Research output: Contribution to journalJournal articleResearchpeer-review

  262. Published

    Class 2 CRISPR-Cas RNA-guided endonucleases : Swiss Army knives of genome editing. / Stella, Stefano; Alcón, Pablo; Montoya, Guillermo.

    In: Nature Structural and Molecular Biology, Vol. 24, No. 11, 11.2017, p. 882-892.

    Research output: Contribution to journalReviewResearchpeer-review

  263. Published

    Protein features as determinants of wild-type glycoside hydrolase thermostability. / Geertz-Hansen, Henrik Marcus; Kiemer, Lars; Nielsen, Morten; Stanchev, Kiril; Blom, Nikolaj; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins: Structure, Function, and Bioinformatics, Vol. 85, No. 11, 11.2017, p. 2036-2044.

    Research output: Contribution to journalJournal articleResearchpeer-review

  264. Published

    RADX interacts with single-stranded DNA to promote replication fork stability. / Schubert, Lisa; Ho, Teresa; Hoffmann, Saskia; Haahr, Peter; Guérillon, Claire; Mailand, Niels.

    In: EMBO Reports, Vol. 18, No. 11, 11.2017, p. 1991-2003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  265. Published

    PTIP chromatin regulator controls development and activation of B cell subsets to license humoral immunity in mice. / Su, Dan; Vanhee, Stijn; Soria, Rebeca; Gyllenbäck, Elin Jaensson; Starnes, Linda M; Højfeldt, Martina Kubec; Pedersen, Gabriel K; Yuan, Joan; Daniel, Jeremy A.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, No. 44, 31.10.2017, p. E9328-E9337.

    Research output: Contribution to journalJournal articleResearchpeer-review

  266. Published

    Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail. / Han, Wenyuan; Pan, Saifu; López-Méndez, Blanca; Montoya, Guillermo; She, Qunxin.

    In: Nucleic Acids Research, Vol. 45, No. 18, gkx726, 13.10.2017, p. 10740-10750.

    Research output: Contribution to journalJournal articleResearchpeer-review

  267. Published

    Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours. / Lasko, Loren M; Jakob, Clarissa G; Edalji, Rohinton P; Qiu, Wei; Montgomery, Debra; Digiammarino, Enrico L; Hansen, T Matt; Risi, Roberto M; Frey, Robin; Manaves, Vlasios; Shaw, Bailin; Algire, Mikkel; Hessler, Paul; Lam, Lloyd T; Uziel, Tamar; Faivre, Emily; Ferguson, Debra; Buchanan, Fritz G; Martin, Ruth L; Torrent, Maricel; Chiang, Gary G; Karukurichi, Kannan; Langston, J William; Weinert, Brian T; Choudhary, Chunaram; de Vries, Peter; Van Drie, John H; McElligott, David; Kesicki, Ed; Marmorstein, Ronen; Sun, Chaohong; Cole, Philip A; Rosenberg, Saul H; Michaelides, Michael R; Lai, Albert; Bromberg, Kenneth D.

    In: Nature, Vol. 550, No. 7674, 05.10.2017, p. 128-132.

    Research output: Contribution to journalJournal articleResearchpeer-review

  268. Published

    Progressive resistance training in head and neck cancer patients undergoing concomitant chemoradiotherapy. / Lonkvist, Camilla K; Vinther, Anders; Zerahn, Bo; Rosenbom, Eva; Deshmukh, Atul S; Hojman, Pernille; Gehl, Julie.

    In: Laryngoscope Investigative Otolaryngology, Vol. 2, No. 5, 10.2017, p. 295-306.

    Research output: Contribution to journalJournal articleResearchpeer-review

  269. Published

    Why is it so difficult to measure glucagon-like peptide-1 in a mouse? / Windeløv, Johanne A; Wewer Albrechtsen, Nicolai J; Kuhre, Rune E; Jepsen, Sara L; Hornburg, Daniel; Pedersen, Jens; Jensen, Elisa P; Galsgaard, Katrine D; Winther-Sørensen, Marie; Ørgaard, Anne; Deacon, Carolyn F; Mann, Matthias; Kissow, Hannelouise; Hartmann, Bolette; Holst, Jens J.

    In: Diabetologia, Vol. 60, No. 10, 10.2017, p. 2066-2075.

    Research output: Contribution to journalJournal articleResearchpeer-review

  270. Published

    Revisiting biomarker discovery by plasma proteomics. / Geyer, Philipp E; Holdt, Lesca M; Teupser, Daniel; Mann, Matthias.

    In: Molecular Systems Biology, Vol. 13, No. 9, 942, 26.09.2017.

    Research output: Contribution to journalReviewResearchpeer-review

  271. Published

    Assembly and analysis of 100 full MHC haplotypes from the Danish population. / Jensen, Jacob M.; Villesen, Palle; Friborg, Rune M.; Mailund, Thomas; Besenbacher, Søren; Sørensen, Lasse Maretty; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Skov, Laurits; Belling, Kirstine G; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; Beusekom, Johan V.; Espeseth, Thomas; Flindt, Esben; Halager, Anders E.; Hellard, Stephanie Le; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Bolund, Lars; Krogh, Anders; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Genome Research, Vol. 27, No. 9, 09.2017, p. 1597-1607.

    Research output: Contribution to journalJournal articleResearchpeer-review

  272. Published

    Synthetic lethality between murine DNA repair factors XLF and DNA-PKcs is rescued by inactivation of Ku70. / Xing, Mengtan; Bjørås, Magnar; Daniel, Jeremy A; Alt, Frederick W; Oksenych, Valentyn.

    In: DNA Repair, Vol. 57, 09.2017, p. 133-138.

    Research output: Contribution to journalJournal articleResearchpeer-review

  273. Published

    TIN-X : target importance and novelty explorer. / Cannon, Daniel C; Yang, Jeremy J; Mathias, Stephen L; Ursu, Oleg; Mani, Subramani; Waller, Anna; Schürer, Stephan C; Jensen, Lars Juhl; Sklar, Larry A; Bologa, Cristian G; Oprea, Tudor I.

    In: Bioinformatics, Vol. 33, No. 16, 15.08.2017, p. 2601-2603.

    Research output: Contribution to journalJournal articleResearchpeer-review

  274. Published

    Localization of PP2A-B56 to centromeres in Drosophila. / Hertz, Emil Peter Thrane; Nilsson, Jakob.

    In: Cell Cycle, Vol. 16, No. 15, 03.08.2017, p. 1385-1386.

    Research output: Contribution to journalEditorialResearchpeer-review

  275. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. / Sørensen, Lasse Maretty; Jensen, Jacob Malte; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Villesen, Palle; Skov, Laurits; Belling, Kirstine G; Have, Christian Theil; Izarzugaza, Jose M. G.; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M.; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf Borbye; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans Rudolf Lytchoff; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Nature, Vol. 548, No. 7665, 03.08.2017, p. 87-91.

    Research output: Contribution to journalLetterResearchpeer-review

  276. Published

    Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper. / Huerta-Cepas, Jaime; Forslund, Kristoffer; Coelho, Luis Pedro; Szklarczyk, Damian; Jensen, Lars Juhl; von Mering, Christian; Bork, Peer.

    In: Molecular Biology and Evolution, Vol. 34, No. 8, 01.08.2017, p. 2115-2122.

    Research output: Contribution to journalJournal articleResearchpeer-review

  277. Published

    Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor. / Sanchez-Quiles, Virginia; Akimov, Vyacheslav; Osinalde, Nerea; Francavilla, Chiara; Puglia, Michele; Barrio-Hernandez, Inigo; Kratchmarova, Irina; Olsen, Jesper V; Blagoev, Blagoy.

    In: Molecular and Cellular Proteomics, Vol. 16, No. 8, 08.2017, p. 1433-1446.

    Research output: Contribution to journalJournal articleResearchpeer-review

  278. Published

    Erratum : Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage. / Stella, Stefano; Alcón, Pablo; Montoya, Guillermo.

    In: Nature, Vol. 547, No. 7664, 27.07.2017, p. 476.

    Research output: Contribution to journalJournal articleCommunication

  279. Published

    Assembly of Francisella novicida Cpf1 endonuclease in complex with guide RNA and target DNA. / Alcón, Pablo; Montoya, Guillermo; Stella, Stefano.

    In: Acta Crystallographica Section F: Structural Biology Communications, Vol. 73, No. Pt 7, 01.07.2017, p. 409-415.

    Research output: Contribution to journalJournal articleResearchpeer-review

  280. Published

    Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage. / Stella, Stefano; Alcón, Pablo; Montoya, Guillermo.

    In: Nature, Vol. 546, No. 7659, 22.06.2017, p. 559-563.

    Research output: Contribution to journalLetterResearchpeer-review

  281. Published

    Replication Catastrophe : When a Checkpoint Fails because of Exhaustion. / Toledo, Luis; Neelsen, Kai John; Lukas, Jiri.

    In: Molecular Cell, Vol. 66, No. 6, 15.06.2017, p. 735-749.

    Research output: Contribution to journalReviewResearchpeer-review

  282. Published

    Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signalling. / Zhang, Gang; Kruse, Thomas; López-Méndez, Blanca; Sylvestersen, Kathrine Beck; Garvanska, Dimitriya H; Schopper, Simone; Nielsen, Michael Lund; Nilsson, Jakob.

    In: Nature Communications, Vol. 8, 15822, 12.06.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  283. Published

    Complete Mapping of Complex Disulfide Patterns with Closely-Spaced Cysteines by In-Source Reduction and Data-Dependent Mass Spectrometry. / Cramer, Christian N; Kelstrup, Christian D; Olsen, Jesper V; Haselmann, Kim F; Nielsen, Peter Kresten.

    In: Analytical Chemistry, Vol. 89, No. 11, 06.06.2017, p. 5949-5957.

    Research output: Contribution to journalJournal articleResearchpeer-review

  284. Published

    Improved Reversed Phase Chromatography of Hydrophilic Peptides from Spatial and Temporal Changes in Column Temperature. / Young, Clifford; Podtelejnikov, Alexandre V; Nielsen, Michael Lund.

    In: Journal of Proteome Research, Vol. 16, No. 6, 02.06.2017, p. 2307-2317.

    Research output: Contribution to journalJournal articleResearchpeer-review

  285. Published

    Proteomic profiling of archaeological human bone. / Sawafuji, Rikai; Cappellini, Enrico; Nagaoka, Tomohito; Fotakis, Anna Katerina; Jersie-Christensen, Rosa Rakownikow; Olsen, Jesper Velgaard; Hirata, Kazuaki; Ueda, Shintaroh.

    In: Royal Society Open Science, Vol. 4, No. 6, 161004, 06.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  286. Published

    Corrigendum : Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. / Forslund, Kristoffer; Hildebrand, Falk; Nielsen, Trine; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara; Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Arumugam, Manimozhiyan; Kristiansen, Karsten; Voigt, Anita Yvonne; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Doré, Joel; Nielsen, H Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S. Dusko; Bork, Peer; Pedersen, Oluf; MetaHIT consortium.

    In: Nature, Vol. 545, No. 116, 22318, 03.05.2017.

    Research output: Contribution to journalComment/debateResearch

  287. Published

    Comparison of global gene expression profiles of microdissected human foetal Leydig cells with their normal and hyperplastic adult equivalents. / Lottrup, Grete; Belling, Kirstine; Leffers, Henrik; Nielsen, John E.; Dalgaard, Marlene D; Juul, Anders; Skakkebæk, Niels E; Brunak, Søren; Meyts, Ewa Rajpert-De.

    In: Molecular Human Reproduction, Vol. 23, No. 5, 01.05.2017, p. 339-354.

    Research output: Contribution to journalJournal articleResearchpeer-review

  288. Published

    Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome. / Weinert, Brian Tate; Satpathy, Shankha; Hansen, Bogi Karbech; Lyon, David; Jensen, Lars Juhl; Choudhary, Chuna Ram.

    In: Molecular and Cellular Proteomics, Vol. 16, 05.2017, p. 759-769.

    Research output: Contribution to journalJournal articleResearchpeer-review

  289. Published

    Klinefelter syndrome comorbidities linked to increased X chromosome gene dosage and altered protein interactome activity. / Belling, Kirstine; Russo, Francesco; Jensen, Anders B.; Dalgaard, Marlene D; Westergaard, David; Rajpert-De Meyts, Ewa; Skakkebæk, Niels E.; Juul, Anders; Brunak, Søren.

    In: Human Molecular Genetics, Vol. 26, No. 7, 01.04.2017, p. 1219-1229.

    Research output: Contribution to journalJournal articleResearchpeer-review

  290. Published

    Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics. / Kulak, Nils A; Geyer, Philipp E; Mann, Matthias.

    In: Molecular and Cellular Proteomics, Vol. 16, No. 4, 04.2017, p. 694-705.

    Research output: Contribution to journalJournal articleResearchpeer-review

  291. Published

    Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer. / Francavilla, Chiara; Lupia, Michela; Tsafou, Kalliopi; Villa, Alessandra; Kowalczyk, Katarzyna; Rakownikow Jersie-Christensen, Rosa; Bertalot, Giovanni; Confalonieri, Stefano; Brunak, Søren; Jensen, Lars J; Cavallaro, Ugo; Olsen, Jesper V.

    In: Cell Reports, Vol. 18, No. 13, 28.03.2017, p. 3242-3256.

    Research output: Contribution to journalJournal articleResearchpeer-review

  292. Published

    Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations. / Kirk, Isa Kristina; Weinhold, Nils; Belling, Kirstine; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Leffers, Henrik; Juul, Anders; Brunak, Søren.

    In: Cell Systems, Vol. 4, No. 3, 357-364.e3, 22.03.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  293. Published

    DEK is required for homologous recombination repair of DNA breaks. / Smith, Eric A; Gole, Boris; Willis, Nicholas A; Soria, Rebeca; Starnes, Linda M; Krumpelbeck, Eric F; Jegga, Anil G; Ali, Abdullah M; Guo, Haihong; Meetei, Amom R; Andreassen, Paul R; Kappes, Ferdinand; Vinnedge, Lisa M Privette; Daniel, Jeremy A; Scully, Ralph; Wiesmüller, Lisa; Wells, Susanne I.

    In: Scientific Reports, Vol. 7, 44662, 20.03.2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  294. Published

    A novel humanized mouse model of Huntington disease for preclinical development of therapeutics targeting mutant huntingtin alleles. / Southwell, Amber L; Skotte, Niels H; Villanueva, Erika B; Østergaard, Michael E; Gu, Xiaofeng; Kordasiewicz, Holly B; Kay, Chris; Cheung, Daphne; Xie, Yuanyun; Waltl, Sabine; Dal Cengio, Louisa; Findlay-Black, Hailey; Doty, Crystal N; Petoukhov, Eugenia; Iworima, Diepiriye; Slama, Ramy; Ooi, Jolene; Pouladi, Mahmoud A; Yang, X William; Swayze, Eric E; Seth, Punit P; Hayden, Michael R.

    In: Human Molecular Genetics, Vol. 26, No. 6, 15.03.2017, p. 1115-1132.

    Research output: Contribution to journalJournal articleResearchpeer-review

  295. Published

    Early differences in islets from prediabetic NOD mice : combined microarray and proteomic analysis. / Crèvecoeur, Inne; Gudmundsdottir, Valborg; Vig, Saurabh; Marques Câmara Sodré, Fernanda; D'Hertog, Wannes; Fierro, Ana Carolina; Van Lommel, Leentje; Gysemans, Conny; Marchal, Kathleen; Waelkens, Etienne; Schuit, Frans; Brunak, Søren; Overbergh, Lut; Mathieu, Chantal.

    In: Diabetologia, Vol. 60, No. 3, 03.2017, p. 475-489.

    Research output: Contribution to journalJournal articleResearchpeer-review

  296. Published

    Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation. / Hendriks, Ivo A; Lyon, David; Young, Clifford; Jensen, Lars J; Vertegaal, Alfred C O; Nielsen, Michael Lund.

    In: Nature Structural and Molecular Biology, Vol. 24, No. 3, 03.2017, p. 325-336.

    Research output: Contribution to journalJournal articleResearchpeer-review

  297. Published

    miRNAs in Human Subcutaneous Adipose Tissue : Effects of Weight Loss Induced by Hypocaloric Diet and Exercise. / Kristensen, Malene M.; Davidsen, Peter K.; Vigelso, Andreas; Hansen, Christina N.; Jensen, Lars J.; Jessen, Niels; Bruun, Jens M.; Dela, Flemming; Helge, Jorn W.

    In: Obesity, Vol. 25, No. 3, 03.2017, p. 572-580.

    Research output: Contribution to journalJournal articleResearchpeer-review

  298. Published

    Sexual dimorphisms in genetic loci linked to body fat Distribution. / Pulit, Sara L.; Karaderi, Tugce; Lindgren, Cecilia M.

    In: Bioscience Reports, Vol. 37, No. 1, BSR20160184, 28.02.2017.

    Research output: Contribution to journalReviewResearchpeer-review

  299. Published

    Cutavirus in cutaneous malignant melanoma. / Mollerup, Sarah; Fridholm, Eva Marie Helena; Vinner, Lasse; Kjartansdóttir, Kristin Rós; Friis-Nielsen, Jens; Asplund, Maria; Romero, Jose Alejandro Herrera; Steiniche, Torben; Mourier, Tobias; Brunak, Søren; Willerslev, Eske; Izarzugaza, Jose M. G.; Hansen, Anders Johannes; Nielsen, Lars P.

    In: Emerging Infectious Diseases , Vol. 23, No. 2, 02.2017, p. 363-365.

    Research output: Contribution to journalLetterResearchpeer-review

  300. Published

    Genetic determinants of serum vitamin B12 and their relation to body mass index. / Allin, Kristine H; Friedrich, Nele; Pietzner, Maik; Grarup, Niels; Thuesen, Betina H; Linneberg, Allan; Pisinger, Charlotta; Hansen, Torben; Pedersen, Oluf; Sandholt, Camilla H.

    In: European Journal of Epidemiology, Vol. 32, No. 2, 02.2017, p. 125–134.

    Research output: Contribution to journalJournal articleResearchpeer-review

  301. Published

    Proteomics insights into DNA damage response and translating this knowledge to clinical strategies. / von Stechow, Louise; Olsen, Jesper V.

    In: Proteomics, Vol. 17, No. 3-4, 1600018, 02.2017.

    Research output: Contribution to journalReviewResearchpeer-review

  302. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Greg; Workman, Christopher T; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans H; Brunak, Søren; Jensen, Thomas S; Hansen, Kasper Lage.

    In: Nature Methods, Vol. 14, No. 1, 01.2017, p. 61–64.

    Research output: Contribution to journalLetterResearchpeer-review

  303. Published

    Combinatorial Drug Screening Identifies Ewing Sarcoma–specific Sensitivities. / Radic-Sarikas, Branka; Tsafou, Kalliopi P; Emdal, Kristina B; Papamarkou, Theodore; Huber, Kilian V M; Mutz, Cornelia; Toretsky, Jeffrey A; Bennett, Keiryn L; Olsen, Jesper V; Brunak, Søren; Kovar, Heinrich; Superti-Furga, Giulio.

    In: Molecular Cancer Therapeutics, Vol. 16, No. 1, 01.2017, p. 88-101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  304. Published

    Pharos : Collating protein information to shed light on the druggable genome. / Nguyen, Dac-Trung; Mathias, Stephen; Bologa, Cristian; Brunak, Soren; Fernandez, Nicolas; Gaulton, Anna; Hersey, Anne; Holmes, Jayme; Jensen, Lars Juhl; Karlsson, Anneli; Liu, Guixia; Ma'ayan, Avi; Mandava, Geetha; Mani, Subramani; Mehta, Saurabh; Overington, John; Patel, Juhee; Rouillard, Andrew D; Schürer, Stephan; Sheils, Timothy; Simeonov, Anton; Sklar, Larry A; Southall, Noel; Ursu, Oleg; Vidovic, Dusica; Waller, Anna; Yang, Jeremy; Jadhav, Ajit; Oprea, Tudor I; Guha, Rajarshi.

    In: Nucleic Acids Research, Vol. 45, No. D1, 01.2017, p. D995–D1002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  305. Published

    The STRING database in 2017 : quality-controlled protein-protein association networks, made broadly accessible. / Szklarczyk, Damian; Morris, John H; Cook, Helen; Kuhn, Michael; Wyder, Stefan; Simonovic, Milan; Santos Delgado, Alberto; Doncheva, Nadezhda T; Roth, Alexander; Bork, Peer; Jensen, Lars J; von Mering, Christian.

    In: Nucleic Acids Research, Vol. 45, No. D1, 01.2017, p. D362-D368.

    Research output: Contribution to journalJournal articleResearchpeer-review

  306. Published

    A Genome-Wide Association Study of IVGTT-Based Measures of First Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants. / Wood, Andrew R; Jonsson, Anna; Jackson, Anne U; Wang, Tian-Nan; van Leewen, Nienke; Palmer, Nicholette D; Kobes, Sayuko; Deelen, Joris; Boquete-Vilarino, Lorena; Paananen, Jussi; Stančáková, Alena; Boomsma, Dorret I; de Geus, Eco Jc; Eekhoff, Elisabeth Mw; Fritsche, Andreas; Kramer, Mark; Nijpels, Giel; Simonis-Bik, Annemarie M C; van Haeften, Timon W; Mahajan, Anubha; Boehnke, Michael; Bergman, Richard N; Tuomilehto, Jaakko; Collins, Francis S; Mohlke, Karen L; Banasik, Karina; Groves, Christopher J; McCarthy, Mark I; Pearson, Ewan R; Natali, Andrea; Mari, Andrea; Buchanan, Thomas A; Taylor, Kent D; Xiang, Anny H; Gjesing, Anette P; Grarup, Niels; Eiberg, Hans; Pedersen, Oluf; Chen, Yii-Derr; Laakso, Markku; Norris, Jill M; Smith, Ulf; Wagenknecht, Lynne E; Baier, Leslie; Bowden, Donald W; Hansen, Torben; Walker, Mark; Watanabe, Richard M; 't Hart, Leen M; Hanson, Robert L; Frayling, Timothy M.

    In: Diabetes, Vol. 66, No. 8, 2017, p. 2296-2309.

    Research output: Contribution to journalJournal articleResearchpeer-review

  307. Published

    A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation. / Pirone, Lucia; Xolalpa, Wendy; Sigurdsson, Jón Otti; Ramirez, Juanma; Pérez, Coralia; González, Monika; de Sabando, Ainara Ruiz; Elortza, Félix; Rodriguez, Manuel S; Mayor, Ugo; Olsen, Jesper V; Barrio, Rosa; Sutherland, James D.

    In: Scientific Reports, Vol. 7, 40756, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  308. Published

    A novel TPR-BEN domain interaction mediates PICH-BEND3 association. / Pitchai, Ganesha P; Kaulich, Manuel; Bizard, Anna H; Mesa, Pablo; Yao, Qi; Sarlos, Kata; Streicher, Werner W; Nigg, Erich A; Montoya, Guillermo; Hickson, Ian D.

    In: Nucleic Acids Research, Vol. 19, No. 2, 2017, p. 11413–11424.

    Research output: Contribution to journalJournal articleResearchpeer-review

  309. Published

    An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes. / Bekker-Jensen, Dorte B; Kelstrup, Christian D; Batth, Tanveer S; Larsen, Sara C; Haldrup, Christa; Bramsen, Jesper B; Sørensen, Karina D; Høyer, Søren; Ørntoft, Torben F; Andersen, Claus L; Nielsen, Michael L; Olsen, Jesper V.

    In: Cell Systems, Vol. 4, No. 6, 2017, p. 587-599, e1-e4.

    Research output: Contribution to journalJournal articleResearchpeer-review

  310. Published

    Association studies of genetic scores of serum vitamin B12 and folate levels with symptoms of depression and anxiety in two danish population studies. / Møllehave, L T; Skaaby, T; Simonsen, K S; Thuesen, B H; Mortensen, Erik Lykke; Sandholt, C H; Pedersen, O; Grarup, N; Hansen, T; Linneberg, A.

    In: European Journal of Clinical Nutrition, Vol. 71, 2017, p. 1054-1060.

    Research output: Contribution to journalJournal articleResearchpeer-review

  311. Published

    Citrullination modulates oligodendrocyte differentiation. / Falcao, A.; Meijer, M.; Rinwa, P.; Cummings, T.; Varas, M.; Liang, J.; Casaccia, P.; Christophorou, M.; Nielsen, M. Lund; Ernfors, P.; Castelo-Branco, G.

    In: Glia, Vol. 65, 2017, p. E389-E389.

    Research output: Contribution to journalJournal articleResearchpeer-review

  312. Published

    Dairy consumption, systolic blood pressure, and risk of hypertension : Mendelian randomization study. / Ding, Ming; Huang, Tao; Bergholdt, Helle K M; Sørensen, Thorkild I.A.; Linneberg, Allan René; Sandholt, Camilla Helene; Pedersen, Oluf ; Hansen, Torben; Kilpeläinen, Tuomas O; CHARGE Consortium ; Nordestgaard, Børge G; Ellervik, Christina; Qi, Lu; Mendelian Randomization of Dairy Consumption Working Group.

    In: The BMJ, Vol. 356, j1000, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  313. Published

    Discovering the miR-26a-5p Targetome in Prostate Cancer Cells. / Rizzo, Milena; Berti, Gabriele; Russo, Francesco; Fazio, Sofia; Evangelista, Monica; D'Aurizio, Romina; Pellegrini, Marco; Rainaldi, Giuseppe.

    In: Journal of Cancer, Vol. 8, No. 14, 2017, p. 2729-2739.

    Research output: Contribution to journalJournal articleResearchpeer-review

  314. Published

    Distinct kinetics of serine and threonine dephosphorylation are essential for mitosis. / Hein, Jamin B; Hertz, Emil P T; Garvanska, Dimitriya H; Kruse, Thomas; Nilsson, Jakob.

    In: Nature Cell Biology, Vol. 19, 2017, p. 1433-1440.

    Research output: Contribution to journalJournal articleResearchpeer-review

  315. Published

    Electron Microscopy Structural Insights into CPAP Oligomeric Behavior : A Plausible Assembly Process of a Supramolecular Scaffold of the Centrosome. / Alvarez-Cabrera, Ana L; Delgado, Sandra; Gil-Carton, David; Mortuza, Gulnahar B; Montoya, Guillermo; Sorzano, Carlos O S; Tang, Tang K; Carazo, Jose M.

    In: Frontiers in Molecular Biosciences, Vol. 4, 17, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  316. Published

    FGF21 Is a Sugar-Induced Hormone Associated with Sweet Intake and Preference in Humans. / Søberg, Susanna; Sandholt, Camilla Helene; Z. Jespersen, Naja ; Toft, Ulla; L. Madsen, Anja ; von Holstein-Rathlou, Stephanie Ø; Grevengoed, Trisha Jean; Christensen, Karl Bang; Bredie, Wender; Potthoff, Matthew J; P. J. Solomon, Thomas; Schéele, Camilla Charlotte; Linneberg, Allan René; Jørgensen, Torben; Pedersen, Oluf Borbye; Hansen, Torben; Gillum, Matthew Paul; Grarup, Niels.

    In: Cell Metabolism, Vol. 25, No. 5, 2017, p. 1045-1053.

    Research output: Contribution to journalJournal articleResearchpeer-review

  317. Published

    Human Environmental Disease Network : A computational model to assess toxicology of contaminants. / Taboureau, Olivier; Audouze, Karine.

    In: Altex, Vol. 17, No. 2, 2017, p. 289-300.

    Research output: Contribution to journalJournal articleResearchpeer-review

  318. Published

    KIT(D816V) Induces SRC-Mediated Tyrosine Phosphorylation of MITF and Altered Transcription Program in Melanoma. / Phung, Bengt; Kazi, Julhash U; Lundby, Alicia; Bergsteinsdottir, Kristin; Sun, Jianmin; Goding, Colin R; Jönsson, Göran; Olsen, Jesper V; Steingrímsson, Eiríkur; Rönnstrand, Lars.

    In: Molecular cancer research : MCR, Vol. 15, No. 9, 2017, p. 1265-1274.

    Research output: Contribution to journalJournal articleResearchpeer-review

  319. Published

    Large-scale phosphoproteomics reveals Shp2 phosphatase-dependent regulators of Pdgf receptor signaling. / Batth, Tanveer S.; Papetti, Moreno; Pfeiffer, Anamarija; Francavilla, Chiara; Olsen, Jesper V.

    In: Molecular & Cellular Proteomics, Vol. 16, No. 8, 2017, p. S46-S46.

    Research output: Contribution to journalJournal articleResearchpeer-review

  320. Published

    Mammary alveolar epithelial cells convert to brown adipocytes in post-lactating mice. / Giordano, Antonio; Perugini, Jessica; Kristensen, David Møbjerg; Sartini, Loris; Frontini, Andrea; Kajimura, Shingo; Kristiansen, Karsten; Cinti, Saverio.

    In: Journal of Cellular Physiology, Vol. 232, No. 11, 2017, p. 2923-2928.

    Research output: Contribution to journalJournal articleResearchpeer-review

  321. Published

    MicroRNAs, Regulatory Networks, and Comorbidities : Decoding Complex Systems. / Russo, Francesco; Belling, Kirstine; Jensen, Anders Boeck; Scoyni, Flavia; Brunak, Søren; Pellegrini, Marco.

    In: Methods in molecular biology (Clifton, N.J.), Vol. 1580, 2017, p. 281-295.

    Research output: Contribution to journalJournal articleResearchpeer-review

  322. Published

    Model-Based Discovery of Synthetic Agonists for the Zn2+-Sensing G-Protein-Coupled Receptor 39 (GPR39) Reveals Novel Biological Functions. / Frimurer, Thomas M.; Mende, Franziska; Graae, Anne-Sofie; Engelstoft, Maja S.; Egerod, Kristoffer L.; Nygaard, Rie; Gerlach, Lars-Ole; Hansen, Jakob Bondo; Schwartz, Thue W.; Holst, Birgitte.

    In: Journal of Medicinal Chemistry, Vol. 60, No. 3, 2017, p. 886-898.

    Research output: Contribution to journalJournal articleResearchpeer-review

  323. Published

    Pancreatic Islet Protein Complexes and Their Dysregulation in Type 2 Diabetes. / Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Brunak, Søren.

    In: Frontiers in Genetics, Vol. 8, 43, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  324. Published

    Plenary Lecture Proteomics technologies for signaling, clinical applications. / Mann, Matthias.

    2017. S62-S62.

    Research output: Contribution to conferenceConference abstract for conferenceCommunication

  325. Published

    Prenatal exposure to paracetamol/acetaminophen and precursor aniline impairs masculinisation of male brain and behaviour. / Hay-Schmidt, Anders; Finkielman, Olivia T. Ejlstrup; Jensen, Benjamin Anderschou Holbech; Høgsbro, Christine F.; Holm, Jacob Bak; Johansen, Kristoffer Haurum; Jensen, Tina Kold; Andrade, Anderson Martino; Swan, Shanna H.; Bornehag, Carl-Gustaf; Brunak, Søren; Jegou, Bernard; Kristiansen, Karsten; Kristensen, David Møbjerg.

    In: Reproduction, Vol. 154, No. 2, 2017, p. 145-152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  326. Published

    Proteome-Wide Identification of In Vivo ADP-Ribose Acceptor Sites by Liquid Chromatography-Tandem Mass Spectrometry. / Larsen, Sara C; Leutert, Mario; Bilan, Vera; Martello, Rita; Jungmichel, Stephanie; Young, Clifford; Hottiger, Michael O; Nielsen, Michael L.

    Poly(ADP-Ribose) Polymerase. ed. / Alexei V. Tulin. Vol. 1608 Humana Press, 2017. p. 149-162 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  327. Published

    Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress. / Munk, Stephanie; Sigurðsson, Jón Otti; Xiao, Zhenyu; Batth, Tanveer Singh; Franciosa, Giulia; von Stechow, Louise; Lopez-Contreras, Andres Joaquin; Vertegaal, Alfred Cornelis Otto; Olsen, Jesper Velgaard.

    In: Cell Reports, Vol. 21, No. 2, 2017, p. 546-558.

    Research output: Contribution to journalJournal articleResearchpeer-review

  328. Published

    Quantitation of Poly(ADP-Ribose) by Isotope Dilution Mass Spectrometry. / Zubel, Tabea; Martello, Rita; Bürkle, Alexander; Mangerich, Aswin.

    Poly(ADP-Ribose) Polymerase . ed. / Alexei V. Tulin. Vol. 1608 Humana Press, 2017. p. 3-18 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  329. Published

    RAIN : RNA-protein Association and Interaction Networks. / Junge, Alexander; Refsgaard, Jan C; Garde, Christian; Pan, Xiaoyong; Santos, Alberto; Alkan, Ferhat; Anthon, Christian; von Mering, Christian; Workman, Christopher T; Jensen, Lars Juhl; Gorodkin, Jan.

    In: Database, Vol. 2017, baw167, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  330. Published

    REDUCED HSP70 AND GLUTAMINE IN PEDIATRIC SEVERE MALARIA ANEMIA: ROLE OF HEMOZOIN IN SUPPRESSING HSP70 AND NF-kappa B ACTIVATION. / Moseley, Pope Lloyd.

    In: American Journal of Tropical Medicine and Hygiene, Vol. 97, No. 5, 2017, p. 517.

    Research output: Contribution to journalJournal articleResearchpeer-review

  331. Published

    RNAscClust : Clustering RNA sequences using structure conservation and graph based motifs. / Miladi, Milad; Junge, Alexander; Costa, Fabrizio; Seemann, Stefan E.; Havgaard, Jakob Hull; Gorodkin, Jan; Backofen, Rolf.

    In: Bioinformatics, Vol. 33, No. 14, 2017, p. 2089-2096.

    Research output: Contribution to journalJournal articleResearchpeer-review

  332. Published

    Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification. / Mullari, Meeli; Lyon, David; Jensen, Lars Juhl; Nielsen, Michael L.

    In: Journal of Proteome Research, Vol. 16, No. 8, 2017, p. 2762-2772.

    Research output: Contribution to journalJournal articleResearchpeer-review

  333. Published

    Structure-based discovery of novel US28 small molecule ligands with different modes of action. / Lückmann, Michael; Amarandi, Roxana-Maria; Papargyri, Natalia; Jakobsen, Mette H; Christiansen, Elisabeth; Jensen, Lars Juhl; Pui, Aurel; Schwartz, Thue W.; Rosenkilde, Mette Marie; Frimurer, Thomas Michael.

    In: Chemical Biology & Drug Design, Vol. 89, No. 3, 2017, p. 289–296.

    Research output: Contribution to journalJournal articleResearchpeer-review

  334. Published

    The impact of the protein interactome on the syntenic structure of mammalian genomes. / Kirk, Isa Kristina; Weinhold, Nils; Brunak, Søren; Belling, Kirstine.

    In: PLOS ONE, Vol. 12, No. 9, e0179112, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  335. Published

    The miRNA Pull Out Assay as a Method to Validate the miR-28-5p Targets Identified in Other Tumor Contexts in Prostate Cancer. / Rizzo, Milena; Berti, Gabriele; Russo, Francesco; Evangelista, Monica; Pellegrini, Marco; Rainaldi, Giuseppe.

    In: International Journal of Genomics, Vol. 2017, 5214806, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  336. Published

    The ubiquitin ligase Cullin5SOCS2 regulates NDR1/STK38 stability and NF-κB transactivation. / Paul, Indranil; Batth, Tanveer S; Iglesias-Gato, Diego; Al-Araimi, Amna; Al-Haddabi, Ibrahim; Alkharusi, Amira; Norstedt, Gunnar; Olsen, Jesper V; Zadjali, Fahad; Flores-Morales, Amilcar.

    In: Scientific Reports, Vol. 7, 42800, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  337. Published

    Transcriptome and metabolite changes during hydrogen cyanamide-induced floral bud break in sweet cherry. / Ionescu, Irina Alexandra; Lopez-Ortega, Gregorio; Burow, Meike; Bayo-Canha, Almudena; Junge, Alexander; Gericke, Oliver; Møller, Birger Lindberg; Sánchez Pérez, Raquel.

    In: Frontiers in Plant Science, Vol. 8, 1233, 2017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  338. 2016
  339. Published

    Proteomics reveals the effects of sustained weight loss on the human plasma proteome. / Geyer, Philipp E; Wewer Albrechtsen, Nicolai J; Tyanova, Stefka; Grassl, Niklas; Iepsen, Eva Pers Winning; Lundgren, Julie; Madsbad, Sten; Holst, Jens J; Torekov, Signe S; Mann, Matthias.

    In: Molecular Systems Biology, Vol. 12, 901, 22.12.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  340. Published

    Seqenv : linking sequences to environments through text mining. / Sinclair, Lucas; Ijaz, Umer Z; Jensen, Lars Juhl; Coolen, Marco J L; Gubry-Rangin, Cecile; Chroňáková, Alica; Oulas, Anastasis; Pavloudi, Christina; Schnetzer, Julia; Weimann, Aaron; Ijaz, Ali; Eiler, Alexander; Quince, Christopher; Pafilis, Evangelos.

    In: PeerJ, Vol. 4, e2690, 20.12.2016, p. 1-17.

    Research output: Contribution to journalJournal articleResearchpeer-review

  341. Published

    Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks. / Sotiriou, Sotirios K; Kamileri, Irene; Lugli, Natalia; Evangelou, Konstantinos; Da-Ré, Caterina; Huber, Florian; Padayachy, Laura; Tardy, Sebastien; Nicati, Noemie L; Barriot, Samia; Ochs, Fena; Lukas, Claudia; Lukas, Jiri; Gorgoulis, Vassilis G; Scapozza, Leonardo; Halazonetis, Thanos D.

    In: Molecular Cell, Vol. 64, No. 6, 15.12.2016, p. 1127-1134.

    Research output: Contribution to journalJournal articleResearchpeer-review

  342. Published

    Profiling DNA damage response following mitotic perturbations. / Pedersen, Ronni Sølvhøi; Karemore, Gopal; Gudjonsson, Thorkell; Rask, Maj-Britt; Neumann, Beate; Hériché, Jean-Karim; Pepperkok, Rainer; Ellenberg, Jan; Gerlich, Daniel W; Lukas, Jiri; Lukas, Claudia.

    In: Nature Communications, Vol. 7, 13887, 15.12.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  343. Published

    Effect of DNA on the conformational dynamics of the endonucleases I-DmoI as provided by molecular dynamics simulations. / Grottesi, Alessandro; Cecconi, Simone; Molina, Rafael; D'abramo, Marco.

    In: Biopolymers, Vol. 105, No. 12, 12.2016, p. 898-904.

    Research output: Contribution to journalJournal articleResearchpeer-review

  344. Published

    Increasing insulin resistance accentuates the effect of triglyceride-associated loci on serum triglycerides during 5 years. / Justesen, Johanne M; Andersson, Ehm Astrid ; Allin, Kristine H; Sandholt, Camilla H; Jørgensen, Torben; Linneberg, Allan; Jørgensen, Marit E; Hansen, Torben; Pedersen, Oluf; Grarup, Niels.

    In: Journal of Lipid Research, Vol. 57, No. 12, 12.2016, p. 2193-2199.

    Research output: Contribution to journalJournal articleResearchpeer-review

  345. Published

    Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation. / Østergaard, Ole; Follmann, Frank; Olsen, Anja W; Heegaard, Niels H; Andersen, Peter; Rosenkrands, Ida.

    In: Molecular and Cellular Proteomics, Vol. 15, No. 12, 12.2016, p. 3540-3550.

    Research output: Contribution to journalJournal articleResearchpeer-review

  346. E-pub ahead of print

    Chronic obstructive pulmonary disease phenotypes using cluster analysis of electronic medical records. / Vazquez Guillamet, Rodrigo; Ursu, Oleg; Iwamoto, Gary; Moseley, Pope L; Oprea, Tudor.

    In: Health Informatics Journal, 17.11.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  347. Published

    Genetic Correlation between Body Fat Percentage and Cardiorespiratory Fitness Suggests Common Genetic Etiology. / Schnurr, Theresia Maria; Gjesing, Anette Marianne Prior; Sandholt, Camilla Helene; Jonsson, Anna Elisabet; Mahendran, Yuvaraj; Have, Christian Theil; Ekstrøm, Claus Thorn; Bjerregaard, Anne-Louise; Brage, Søren; Witte, Daniel; Jørgensen, Marit Eika; Aadahl, Mette; Thuesen, Betina Heinsbæk; Linneberg, Allan René; Eiberg, Hans Rudolf Lytchoff; Pedersen, Oluf Borbye; Grarup, Niels; Oskari Kilpeläinen, Tuomas; Hansen, Torben.

    In: P L o S One, Vol. 11, No. 11, e0166738, 15.11.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  348. Published

    High-throughput immuno-profiling of mamba (Dendroaspis) venom toxin epitopes using high-density peptide microarrays. / Engmark, Mikael; Andersen, Mikael R.; Laustsen, Andreas H; Patel, Jigar; Sullivan, Eric; de Masi, Federico; Hansen, Christian S; Kringelum, Jens V; Lomonte, Bruno; Gutiérrez, José María; Lund, Ole.

    In: Scientific Reports, Vol. 6, 36629, 08.11.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  349. Published

    EphrinB1/EphB3b Coordinate Bidirectional Epithelial-Mesenchymal Interactions Controlling Liver Morphogenesis and Laterality. / Cayuso, Jordi; Dzementsei, Aliaksandr; Fischer, Johanna C; Karemore, Gopal; Caviglia, Sara; Bartholdson, Josefin; Wright, Gavin J; Ober, Elke A.

    In: Developmental Cell, Vol. 39, No. 3, 07.11.2016, p. 316-328.

    Research output: Contribution to journalJournal articleResearchpeer-review

  350. Published

    SCAI promotes DNA double-strand break repair in distinct chromosomal contexts. / Hansen, Rebecca Kring; Mund, Andreas; Poulsen, Sara Lund; Sandoval, Maria; Klement, Karolin; Tsouroula, Katerina; Tollenaere, Maxim A X; Räschle, Markus; Soria, Rebeca; Offermanns, Stefan; Worzfeld, Thomas; Grosse, Robert; Brandt, Dominique T; Rozell, Björn; Mann, Matthias; Cole, Francesca; Soutoglou, Evi; Goodarzi, Aaron A; Daniel, Jeremy A; Mailand, Niels; Bekker-Jensen, Simon.

    In: Nature Cell Biology, Vol. 18, No. 12, 07.11.2016, p. 1357–1366.

    Research output: Contribution to journalLetterResearchpeer-review

  351. Published

    Diagnosis trajectories of prior multi-morbidity predict sepsis mortality. / Beck, Mette K; Jensen, Anders Boeck; Nielsen, Annelaura Bach; Perner, Anders; Moseley, Pope L; Brunak, Søren.

    In: Scientific Reports, Vol. 6, 36624, 04.11.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  352. Published

    Loss of CHD1 causes DNA repair defects and enhances prostate cancer therapeutic responsiveness. / Kari, Vijayalakshmi; Mansour, Wael Yassin; Raul, Sanjay Kumar; Baumgart, Simon J; Mund, Andreas; Grade, Marian; Sirma, Hüseyin; Simon, Ronald; Will, Hans; Dobbelstein, Matthias; Dikomey, Ekkehard; Johnsen, Steven A.

    In: E M B O Reports, Vol. 17, No. 11, 01.11.2016, p. 1609-1623.

    Research output: Contribution to journalJournal articleResearchpeer-review

  353. Published

    Activation of the ATR kinase by the RPA-binding protein ETAA1. / Haahr, Peter; Hoffmann, Saskia; Tollenaere, Maxim A X; Ho, Teresa; Toledo Lazaro, Luis Ignacio; Mann, Matthias; Bekker-Jensen, Simon; Räschle, Markus; Mailand, Niels.

    In: Nature Cell Biology, Vol. 18, No. 11, 11.2016, p. 1196–1207.

    Research output: Contribution to journalJournal articleResearchpeer-review

  354. Published

    E4 ligase-specific ubiquitination hubs coordinate DNA double-strand-break repair and apoptosis. / Ackermann, Leena; Schell, Michael; Pokrzywa, Wojciech; Kevei, Éva; Gartner, Anton; Schumacher, Björn; Hoppe, Thorsten.

    In: Nature Structural & Molecular Biology, Vol. 23, No. 11, 11.2016, p. 995-1002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  355. Published

    Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue. / Martello, Rita; Leutert, Mario; Jungmichel, Stephanie; Bilan, Vera; Larsen, Sara C; Young, Clifford; Hottiger, Michael O; Nielsen, Michael L.

    In: Nature Communications, Vol. 7, 12917, 01.10.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  356. Published

    Generation and analyses of human synthetic antibody libraries and their application for protein microarrays. / Säll, Anna; Walle, Maria; Wingren, Christer; Müller, Susanne; Nyman, Tomas; Lages Lino Vala, Andrea; Ohlin, Mats; Borrebaeck, Carl A K; Persson, Helena.

    In: Protein Engineering Design and Selection (Print), Vol. 29, No. 10, 10.2016, p. 427-37.

    Research output: Contribution to journalJournal articleResearchpeer-review

  357. Published

    Network biology concepts in complex disease comorbidities. / Hu, Jessica Xin; Thomas, Cecilia Engel; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 17, 10.2016, p. 615–629.

    Research output: Contribution to journalReviewResearchpeer-review

  358. Published

    The hunt for fatal myocardial infarction biomarkers : predictive circulating microRNAs. / Russo, Francesco; Rizzo, Milena; Belling, Kirstine; Brunak, Søren; Folkersen, Lasse.

    In: Journal of Translational Medicine, Vol. 4, No. Suppl 1, S1, 10.2016.

    Research output: Contribution to journalEditorialResearch

  359. Published

    52 Genetic Loci Influencing Myocardial Mass. / van der Harst, Pim; van Setten, Jessica; Verweij, Niek; Vogler, Georg; Franke, Lude; Maurano, Matthew T; Wang, Xinchen; Mateo Leach, Irene; Eijgelsheim, Mark; Sotoodehnia, Nona; Hayward, Caroline; Sorice, Rossella; Meirelles, Osorio; Lyytikäinen, Leo-Pekka; Polašek, Ozren; Tanaka, Toshiko; Arking, Dan E; Ulivi, Sheila; Trompet, Stella; Müller-Nurasyid, Martina; Smith, Albert V; Dörr, Marcus; Kerr, Kathleen F; Magnani, Jared W; Del Greco M, Fabiola; Zhang, Weihua; Nolte, Ilja M; Silva, Claudia T; Padmanabhan, Sandosh; Tragante, Vinicius; Esko, Tõnu; Abecasis, Gonçalo R; Adriaens, Michiel E; Andersen, Karl; Barnett, Phil; Bis, Joshua C; Bodmer, Rolf; Buckley, Brendan M; Campbell, Harry; Cannon, Megan V; Chakravarti, Aravinda; Chen, Lin Y; Delitala, Alessandro; Devereux, Richard B; Doevendans, Pieter A; Dominiczak, Anna F; Ferrucci, Luigi; Ford, Ian; Gieger, Christian; Harris, Tamara B; Haugen, Eric; Heinig, Matthias; Hernandez, Dena G; Hillege, Hans L; Hirschhorn, Joel N; Hofman, Albert; Hubner, Norbert; Hwang, Shih-Jen; Iorio, Annamaria; Kähönen, Mika; Kellis, Manolis; Kolcic, Ivana; Kooner, Ishminder K; Kooner, Jaspal S; Kors, Jan A; Lakatta, Edward G; Lage, Kasper; Launer, Lenore J; Levy, Daniel; Lundby, Alicia; Macfarlane, Peter W; May, Dalit; Meitinger, Thomas; Metspalu, Andres; Nappo, Stefania; Naitza, Silvia; Neph, Shane; Nord, Alex S; Nutile, Teresa; Okin, Peter M; Olsen, Jesper V; Oostra, Ben A; Penninger, Josef M; Pennacchio, Len A; Pers, Tune H; Perz, Siegfried; Peters, Annette; Pinto, Yigal M; Pfeufer, Arne; Pilia, Maria Grazia; Pramstaller, Peter P; Prins, Bram P; Raitakari, Olli T; Raychaudhuri, Soumya; Rice, Ken M; Rossin, Elizabeth J; Rotter, Jerome I; Schafer, Sebastian; Schlessinger, David; Schmidt, Carsten O; Sehmi, Jobanpreet; Silljé, Herman H W; Sinagra, Gianfranco; Sinner, Moritz F; Slowikowski, Kamil; Soliman, Elsayed Z; Spector, Timothy D; Spiering, Wilko; Stamatoyannopoulos, John A; Stolk, Ronald P; Strauch, Konstantin; Tan, Sian-Tsung; Tarasov, Kirill V; Trinh, Bosco; Uitterlinden, Andre G; van den Boogaard, Malou; van Duijn, Cornelia M; van Gilst, Wiek H; Viikari, Jorma S; Visscher, Peter M; Vitart, Veronique; Völker, Uwe; Waldenberger, Melanie; Weichenberger, Christian X; Westra, Harm-Jan; Wijmenga, Cisca; Wolffenbuttel, Bruce H; Yang, Jian; Bezzina, Connie R; Munroe, Patricia B; Snieder, Harold; Wright, Alan F; Rudan, Igor; Boyer, Laurie A; Asselbergs, Folkert W; van Veldhuisen, Dirk J; Stricker, Bruno H; Psaty, Bruce M; Ciullo, Marina; Sanna, Serena; Lehtimäki, Terho; Wilson, James F; Bandinelli, Stefania; Alonso, Alvaro; Gasparini, Paolo; Jukema, J Wouter; Kääb, Stefan; Gudnason, Vilmundur; Felix, Stephan B; Heckbert, Susan R; de Boer, Rudolf A; Newton-Cheh, Christopher; Hicks, Andrew A; Chambers, John C; Jamshidi, Yalda; Visel, Axel; Christoffels, Vincent M; Isaacs, Aaron; Samani, Nilesh J; de Bakker, Paul I W.

    In: Journal of the American College of Cardiology, Vol. 68, No. 13, 27.09.2016, p. 1435-48.

    Research output: Contribution to journalJournal articleResearchpeer-review

  360. Published

    Molecular architecture of the recombinant human MCM2-7 helicase in complex with nucleotides and DNA. / Boskovic, Jasminka; Bragado-Nilsson, Elisabeth; Saligram Prabhakar, Bhargav; Yefimenko, Igor; Martínez-Gago, Jaime; Muñoz, Sergio; Méndez, Juan; Montoya, Guillermo.

    In: Cell Cycle, Vol. 15, No. 18, 16.09.2016, p. 2431-40.

    Research output: Contribution to journalJournal articleResearchpeer-review

  361. Published

    Mass-spectrometric exploration of proteome structure and function. / Aebersold, Ruedi; Mann, Matthias.

    In: Nature, Vol. 537, No. 7620, 15.09.2016, p. 347-55.

    Research output: Contribution to journalJournal articleResearchpeer-review

  362. Published

    Prolyl-isomerase Pin1 controls Notch3 protein expression and regulates T-ALL progression. / Franciosa, G.; Diluvio, G.; Del Gaudio, F.; Giuli, M. V.; Palermo, R.; Grazioli, P.; Campese, A. F.; Talora, C.; Bellavia, D.; D'Amati, G.; Besharat, Z. M.; Nicoletti, C.; Siebel, C. W.; Choy, L.; Rustighi, A.; Sal, G. Del; Screpanti, I.; Checquolo, S.

    In: Oncogene, Vol. 35, No. 36, 08.09.2016, p. 4741-4751.

    Research output: Contribution to journalJournal articleResearchpeer-review

  363. Published

    Synergistic inhibition of the APC/C by the removal of APC15 in HCT116 cells lacking UBE2C. / Garvanska, Dimitriya H; Larsen, Marie Sofie Yoo; Nilsson, Jakob.

    In: Biology Open, Vol. 5, 02.09.2016, p. 1441-1448.

    Research output: Contribution to journalJournal articleResearchpeer-review

  364. Published

    SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes. / Wagner, Sebastian A; Satpathy, Shankha; Beli, Petra; Choudhary, Chuna Ram.

    In: E M B O Journal, Vol. 35, No. 17, 01.09.2016, p. 1868-1884.

    Research output: Contribution to journalJournal articleResearchpeer-review

  365. Published

    A comprehensive compilation of SUMO proteomics. / Hendriks, Ivo A; Vertegaal, Alfred C O.

    In: Nature Reviews. Molecular Cell Biology, Vol. 17, No. 9, 09.2016, p. 581-95.

    Research output: Contribution to journalJournal articleResearchpeer-review

  366. Published

    Orthologous and Paralogous AmpD Peptidoglycan Amidases from Gram-Negative Bacteria. / Rivera, Ivanna; Molina, Rafael; Lee, Mijoon; Mobashery, Shahriar; Hermoso, Juan A.

    In: Microbial Drug Resistance, Vol. 22, No. 6, 09.2016, p. 470-6.

    Research output: Contribution to journalReviewResearchpeer-review

  367. Published

    Renew or die : The molecular mechanisms of peptidoglycan recycling and antibiotic resistance in Gram-negative pathogens. / Domínguez-Gil, Teresa; Molina, Rafael; Alcorlo, Martín; Hermoso, Juan A.

    In: Drug Resistance Updates, Vol. 28, 09.2016, p. 91-104.

    Research output: Contribution to journalReviewResearchpeer-review

  368. Published

    Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality. / Kibat, Janek; Schirrmann, Thomas; Knape, Matthias J; Helmsing, Saskia; Meier, Doris; Hust, Michael; Schröder, Christoph; Bertinetti, Daniela; Winter, Gerhard; Pardes, Khalid; Funk, Mia; Lages Lino Vala, Andrea; Giese, Nathalia; Herberg, Friedrich W; Dübel, Stefan; Hoheisel, Jörg D.

    In: New Biotechnology, Vol. 33, No. 5A, 09.2016, p. 574-581.

    Research output: Contribution to journalJournal articleResearchpeer-review

  369. Published

    Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells. / Larsen, Sara C; Sylvestersen, Kathrine B; Mund, Andreas; Lyon, David; Mullari, Meeli; Madsen, Maria V; Daniel, Jeremy A; Jensen, Lars J; Nielsen, Michael Lund.

    In: Science signaling, Vol. 9, No. 443, rs9, 30.08.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  370. Published

    Transcriptional interactions suggest niche segregation among microorganisms in the human gut. / Plichta, Damian Rafal; Juncker, Agnieszka Sierakowska; Bertalan, Marcelo; Rettedal, Elizabeth; Gautier, Laurent; Varela, Encarna; Manichanh, Chaysavanh; Fouqueray, Charlène; Levenez, Florence; Nielsen, Trine; Doré, Joël; Machado, Ana Manuel Dantas; de Evgrafov, Mari Cristina Rodriguez; Hansen, Torben; Jørgensen, Torben; Bork, Peer; Guarner, Francisco; Pedersen, Oluf; Metagenomics of the Human Intestinal Tract (MetaHIT) Consortium; Sommer, Morten O A; Ehrlich, S Dusko; Sicheritz-Pontén, Thomas; Brunak, Søren; Nielsen, H Bjørn.

    In: Nature Microbiology, Vol. 1, 16152, 26.08.2016, p. 1-6.

    Research output: Contribution to journalLetterResearchpeer-review

  371. Published

    Cellular Barcoding Links B-1a B Cell Potential to a Fetal Hematopoietic Stem Cell State at the Single-Cell Level. / Kristiansen, Trine A; Jaensson Gyllenbäck, Elin; Zriwil, Alya; Björklund, Tomas; Daniel, Jeremy A; Sitnicka, Ewa; Soneji, Shamit; Bryder, David; Yuan, Joan.

    In: Immunity, Vol. 45, No. 2, 16.08.2016, p. 346-57.

    Research output: Contribution to journalJournal articleResearchpeer-review

  372. Published

    53BP1 fosters fidelity of homology-directed DNA repair. / Ochs, Fena; Somyajit, Kumar; Altmeyer, Matthias; Rask, Maj-Britt Druedahl; Lukas, Jiri; Lukas, Claudia.

    In: Nature Structural and Molecular Biology, Vol. 23, No. 8, 08.2016, p. 714-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  373. Published

    Characterization of the NTPR and BD1 interacting domains of the human PICH-BEND3 complex. / Pitchai, Ganesha P; Hickson, Ian D; Streicher, Werner; Montoya, Guillermo; Mesa, Pablo.

    In: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, Vol. 72, No. 8, 08.2016, p. 646-651.

    Research output: Contribution to journalJournal articleResearchpeer-review

  374. Published

    Continual removal of H3K9 promoter methylation by Jmjd2 demethylases is vital for ESC self-renewal and early development. / Pedersen, Marianne Terndrup; Kooistra, Susanne Marije; Radzisheuskaya, Aliaksandra; Laugesen, Anne; Johansen, Jens Vilstrup; Hayward, Daniel Geoffrey; Nilsson, Jakob; Agger, Karl; Helin, Kristian.

    In: E M B O Journal, Vol. 35, No. 14, 15.07.2016, p. 1550-64.

    Research output: Contribution to journalJournal articleResearchpeer-review

  375. Published

    Discovering miRNA regulatory networks in holt-oram syndrome using a zebrafish model. / D'Aurizio, Romina; Russo, Francesco; Chiavacci, Elena; Baumgart, Mario; Groth, Marco; D'Onofrio, Mara; Arisi, Ivan; Rainaldi, Giuseppe; Pitto, Letizia; Pellegrini, Marco.

    In: Frontiers in Bioengineering and Biotechnology, Vol. 4, No. JUL, 60, 14.07.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  376. Published

    Cetuximab Resistance in Squamous Carcinomas of the Upper Aerodigestive Tract Is Driven by Receptor Tyrosine Kinase Plasticity : Potential for mAb Mixtures. / Kjær, Ida; Lindsted, Trine; Fröhlich, Camilla; Olsen, Jesper Velgaard; Horak, Ivan David; Kragh, Michael; Pedersen, Mikkel Wandahl.

    In: Molecular Cancer Therapeutics, Vol. 15, No. 7, 07.2016, p. 1614-1626.

    Research output: Contribution to journalJournal articleResearchpeer-review

  377. Published

    The genome editing revolution : A CRISPR-Cas TALE off-target story. / Stella, Stefano; Montoya, Guillermo.

    In: BioEssays, Vol. 38, No. S1, 07.2016, p. S4-S13.

    Research output: Contribution to journalJournal articleResearchpeer-review

  378. Published

    H4K20me0 marks post-replicative chromatin and recruits the TONSL–MMS22L DNA repair complex. / Saredi, Giulia; Huang, Hongda; Hammond, Colin M; Alabert, Constance; Bekker-Jensen, Simon; Forne, Ignasi; Reverón-Gómez, Nazaret; Foster, Benjamin M; Mlejnkova, Lucie; Bartke, Till; Cejka, Petr; Mailand, Niels; Imhof, Axel; Patel, Dinshaw J; Groth, Anja.

    In: Nature, Vol. 534, No. 7609, 30.06.2016, p. 714-8.

    Research output: Contribution to journalJournal articleResearchpeer-review

  379. Published

    Writers, Readers, and Erasers of Histone Ubiquitylation in DNA Double-Strand Break Repair. / Smeenk, Godelieve; Mailand, Niels.

    In: Frontiers in Genetics, Vol. 7, 122, 28.06.2016.

    Research output: Contribution to journalReviewResearchpeer-review

  380. Published

    KinMutRF : a random forest classifier of sequence variants in the human protein kinase superfamily. / Pons, Tirso; Vazquez, Miguel; Matey-Hernandez, María Luisa; Brunak, Søren; Valencia, Alfonso; Izarzugaza, Jose Mg.

    In: BMC Genomics, Vol. 17, No. Suppl 2, 396, 23.06.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  381. Published

    Structural Analysis of a Complex between Small Ubiquitin-like Modifier 1 (SUMO1) and the ZZ Domain of CREB-binding Protein (CBP/p300) Reveals a New Interaction Surface on SUMO. / Diehl, Carl; Akke, Mikael; Bekker-Jensen, Simon; Mailand, Niels; Streicher, Werner; Wikström, Mats.

    In: Journal of Biological Chemistry, Vol. 291, No. 24, 10.06.2016, p. 12658-12672.

    Research output: Contribution to journalJournal articleResearchpeer-review

  382. Published

    Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking. / Francavilla, Chiara; Papetti, Moreno; Rigbolt, Kristoffer T G; Pedersen, Anna-Kathrine; Sigurdsson, Jon O; Cazzamali, Giuseppe; Karemore, Gopal; Blagoev, Blagoy; Olsen, Jesper V.

    In: Nature Structural and Molecular Biology, Vol. 23, No. 6, 06.2016, p. 608–618.

    Research output: Contribution to journalJournal articleResearchpeer-review

  383. Published

    Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers. / Schwertman, Petra; Bekker-Jensen, Simon; Mailand, Niels.

    In: Nature Reviews. Molecular Cell Biology, Vol. 17, No. 6, 06.2016, p. 379-94.

    Research output: Contribution to journalJournal articleResearchpeer-review

  384. Published

    Structure of the I-SceI nuclease complexed with its dsDNA target and three catalytic metal ions. / Prieto, Jesús; Redondo, Pilar; Merino, Nekane; Villate, Maider; Montoya, Guillermo; Blanco, Francisco J; Molina, Rafael.

    In: Acta crystallographica. Section F, Structural biology communications, Vol. 72, No. Pt 6, 06.2016, p. 473-9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  385. Published

    The effect of insulin resistance and exercise on the percentage of CD16(+) monocyte subset in obese individuals. / de Matos, Mariana A; Duarte, Tamiris C; Ottone, Vinícius de O; Sampaio, Pâmela F da M; Costa, Karine B; de Oliveira, Marcos F Andrade; Moseley, Pope L; Schneider, Suzanne M; Coimbra, Cândido C; Brito-Melo, Gustavo E A; Magalhães, Flávio de C; Amorim, Fabiano T; Rocha-Vieira, Etel.

    In: Cell Biochemistry and Function, Vol. 34, No. 4, 06.2016, p. 209-16.

    Research output: Contribution to journalJournal articleResearchpeer-review

  386. Published

    Biophysical and Structural Characterization of the Interaction Between PICH and BEND3. / Pitchai, Ganesha Pandian.

    2016.

    Research output: Book/ReportPh.D. thesisResearch

  387. Published

    Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. / Brunk, Elizabeth; George, Kevin W; Alonso-Gutierrez, Jorge; Thompson, Mitchell; Baidoo, Edward; Wang, George; Petzold, Christopher J; McCloskey, Douglas; Monk, Jonathan; Yang, Laurence; O'Brien, Edward J; Batth, Tanveer S; Martin, Hector Garcia; Feist, Adam; Adams, Paul D; Keasling, Jay D; Palsson, Bernhard O; Lee, Taek Soon.

    In: Cell Systems, Vol. 2, No. 5, 25.05.2016, p. 335-46.

    Research output: Contribution to journalJournal articleResearchpeer-review

  388. Published

    Testing the role of predicted gene knockouts in human anthropometric trait variation. / NHLBI GO Exome Sequence Project; GOT2D; T2D-GENES; GIANT Consortium.

    In: Human Molecular Genetics, Vol. 25, No. 10, 15.05.2016, p. 2082-2092.

    Research output: Contribution to journalJournal articleResearchpeer-review

  389. Published

    Familial Atrial Septal Defect and Sudden Cardiac Death : Identification of a Novel NKX2-5 Mutation and a Review of the Literature. / Ellesøe, Sabrina Gade; Johansen, Morten Munk; Bjerre, Jesper Vandborg; Hjortdal, Vibeke Elisabeth; Brunak, Søren; Larsen, Lars Allan.

    In: Congenital Heart Disease, Vol. 11, No. 3, 01.05.2016, p. 283–290.

    Research output: Contribution to journalJournal articleResearchpeer-review

  390. Published

    Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. / Ellinghaus, David; Jostins, Luke; Spain, Sarah L; Cortes, Adrian; Bethune, Jörn; Han, Buhm; Park, Yu Rang; Raychaudhuri, Soumya; Pouget, Jennie G; Hübenthal, Matthias; Folseraas, Trine; Wang, Yunpeng; Esko, Tonu; Metspalu, Andres; Westra, Harm-Jan; Franke, Lude; Pers, Tune H; Weersma, Rinse K; Collij, Valerie; D'Amato, Mauro; Halfvarson, Jonas; Jensen, Anders Boeck; Lieb, Wolfgang; Degenhardt, Franziska; Forstner, Andreas J; Hofmann, Andrea; Schreiber, Stefan; Mrowietz, Ulrich; Juran, Brian D; Lazaridis, Konstantinos N; Brunak, Søren; Dale, Anders M; Trembath, Richard C; Weidinger, Stephan; Weichenthal, Michael; Ellinghaus, Eva; Elder, James T; Barker, Jonathan N W N; Andreassen, Ole A; McGovern, Dermot P; Karlsen, Tom H; Barrett, Jeffrey C; Parkes, Miles; Brown, Matthew A; Franke, Andre; International IBD Genetics Consortium (IIBDGC).

    In: Nature Genetics, Vol. 48, No. 5, 05.2016, p. 510-521.

    Research output: Contribution to journalJournal articleResearchpeer-review

  391. Published
  392. Published

    Standardized benchmarking in the quest for orthologs. / Altenhoff, Adrian M; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; Dalquen, Daniel A; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cécile; Pryszcz, Leszek P; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clément-Marie; Bork, Peer; Lecompte, Odile; von Mering, Christian; Xenarios, Ioannis; Sjölander, Kimmen; Jensen, Lars Juhl; Martin, Maria J; Muffato, Matthieu; Gabaldón, Toni; Lewis, Suzanna E; Thomas, Paul D; Sonnhammer, Erik; Dessimoz, Christophe; Quest for Orthologs consortium.

    In: Nature Methods, Vol. 13, 05.2016, p. 425-30.

    Research output: Contribution to journalJournal articleResearchpeer-review

  393. Published

    The Proteome of Primary Prostate Cancer. / Iglesias-Gato, Diego; Wikström, Pernilla; Tyanova, Stefka; Lavallee, Charlotte; Thysell, Elin; Carlsson, Jessica; Hägglöf, Christina; Cox, Jürgen; Andrén, Ove; Stattin, Pär; Egevad, Lars; Widmark, Anders; Bjartell, Anders; Collins, Colin C; Bergh, Anders; Geiger, Tamar; Mann, Matthias; Flores-Morales, Amilcar.

    In: European Urology, Vol. 69, No. 5, 05.2016, p. 942-952.

    Research output: Contribution to journalJournal articleResearchpeer-review

  394. Published

    Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. / Grassl, Niklas; Kulak, Nils Alexander; Pichler, Garwin; Geyer, Philipp Emanuel; Jung, Jette; Schubert, Sören; Sinitcyn, Pavel; Cox, Juergen; Mann, Matthias.

    In: Genome Medicine, Vol. 8, 44, 21.04.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  395. Published

    Insulin-stimulated glucose uptake in healthy and insulin-resistant skeletal muscle. / Deshmukh, Atul S.

    In: Hormone Molecular Biology and Clinical Investigation, Vol. 26, No. 1, 01.04.2016, p. 13-24.

    Research output: Contribution to journalReviewResearchpeer-review

  396. Published

    Suppressor of cytokine signaling 2 (SOCS2) deletion protects against multiple low dose streptozotocin-induced type 1 diabetes in adult male mice. / Alkharusi, Amira; Mirecki-Garrido, Mercedes; Ma, Zuheng; Flores-Morales, Amilcar; Nyström, Thomas; Castrillo, Antonio; Bjorklund, Anneli; Norstedt, Gunnar; Fernández-Perez, Leandro.

    In: Hormone Molecular Biology and Clinical Investigation, Vol. 26, No. 1, 04.2016, p. 67-76.

    Research output: Contribution to journalJournal articleResearchpeer-review

  397. Published

    The role of HERC2 and RNF8 ubiquitin E3 ligases in the promotion of translesion DNA synthesis in the chicken DT40 cell line. / Mohiuddin, Mohammed; Kobayashi, Shunsuke; Keka, Islam Shamima; Guilbaud, Guillaume; Sale, Julian; Narita, Takeo; Abdel-Aziz, H. Ismail; Wang, Xin; Ogawa, Saki; Sasanuma, Hiroyuki; Chiu, Roland; Østergaard, Vibe Hallundbæk; Lisby, Michael; Takeda, Shunichi.

    In: DNA Repair, Vol. 40, 04.2016, p. 67-76.

    Research output: Contribution to journalJournal articleResearchpeer-review

  398. Published

    Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnover. / Nguyen, Thanh Hung; Andrejeva, Diana; Gupta, Rajat; Choudhary, Chuna Ram; Hong, Xin; Eichhorn, Pieter JA ; Loya, Anand Chainsukh; Cohen, Stephen Michael.

    In: Cell Discovery, Vol. 2, 16001, 29.03.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  399. Published

    Plasma Proteome Profiling to Assess Human Health and Disease. / Geyer, Philipp E; Kulak, Nils A; Pichler, Garwin; Holdt, Lesca M; Teupser, Daniel; Mann, Matthias.

    In: Cell Systems, Vol. 2, No. 3, 23.03.2016, p. 185-95.

    Research output: Contribution to journalJournal articleResearchpeer-review

  400. Published

    Intestinal epithelial barrier function and tight junction proteins with heat and exercise. / Dokladny, Karol; Zuhl, Micah N; Moseley, Pope L.

    In: Journal of Applied Physiology, Vol. 120, No. 6, 15.03.2016, p. 692-701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  401. Published

    Key Players in I-DmoI Endonuclease Catalysis Revealed from Structure and Dynamics. / Molina, Rafael; Besker, Neva; Marcaida, Maria Jose; Montoya, Guillermo; Prieto, Jesús; D'Abramo, Marco.

    In: ACS chemical biology, Vol. 11, No. 5, 08.03.2016, p. 1401–1407.

    Research output: Contribution to journalJournal articleResearchpeer-review

  402. Published

    The Spindle Assembly Checkpoint Is Not Essential for Viability of Human Cells with Genetically Lowered APC/C Activity. / Wild, Thomas; Larsen, Marie Sofie Yoo; Narita, Takeo; Schou, Julie; Nilsson, Jakob; Choudhary, Chuna Ram.

    In: Cell Reports, Vol. 14, No. 8, 01.03.2016, p. 1829-40.

    Research output: Contribution to journalJournal articleResearchpeer-review

  403. Published

    Evidence of Extrapancreatic Glucagon Secretion in Man. / Lund, Asger; Bagger, Jonatan I; Wewer Albrechtsen, Nicolai J; Christensen, Mikkel; Grøndahl, Magnus; Hartmann, Bolette; Mathiesen, Elisabeth R; Hansen, Carsten P; Storkholm, Jan H; van Hall, Gerrit; Rehfeld, Jens F; Hornburg, Daniel; Meissner, Felix; Mann, Matthias; Larsen, Steen; Holst, Jens J; Lauritsen, Tina Vilsbøll; Knop, Filip K.

    In: Diabetes, Vol. 65, No. 3, 03.2016, p. 585-597.

    Research output: Contribution to journalJournal articleResearchpeer-review

  404. Published

    How Suitable Are Registry Data for Recurrence Risk Calculations? Validation of Diagnoses on 1,593 Families With Congenital Heart Disease. / Ellesøe, Sabrina Gade; Jensen, Anders Boeck; Ängquist, Lars Henrik; Hjortdal, Vibeke Elisabeth; Larsen, Lars Allan; Brunak, Søren.

    In: World journal for pediatric & congenital heart surgery, Vol. 7, No. 2, 03.2016, p. 169-77.

    Research output: Contribution to journalJournal articleResearchpeer-review

  405. Published

    Interphase APC/C-Cdc20 inhibition by cyclin A2-Cdk2 ensures efficient mitotic entry. / Hein, Jamin B; Nilsson, Jakob.

    In: Nature Communications, Vol. 7, 10975, 03.2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  406. Published

    Selective use of corifollitropin for controlled ovarian stimulation for IVF in patients with low anti-Müllerian hormone. / Nielsen, Anna Pors; Korsholm, Anne-Sofie; Lemmen, Josephine G.; Lykke-Sylvest, Randi; Sopa, Negjyp; Nyboe Andersen, Anders.

    In: Gynecological Endocrinology, Vol. 32, No. 8, 18.02.2016, p. 625–628.

    Research output: Contribution to journalJournal articleResearchpeer-review

  407. Published

    Disulfide Linkage Characterization of Disulfide Bond-Containing Proteins and Peptides by Reducing Electrochemistry and Mass Spectrometry. / Cramer, Christian N; Haselmann, Kim F; Olsen, Jesper V; Nielsen, Peter Kresten.

    In: Analytical Chemistry, Vol. 88, No. 3, 02.02.2016, p. 1585-1592.

    Research output: Contribution to journalJournal articleResearchpeer-review

  408. Published

    A PTIP-PA1 subcomplex promotes transcription for IgH class switching independently from the associated MLL3/MLL4 methyltransferase complex. / Starnes, Linda M; Su, Dan; Pikkupeura, Laura M; Weinert, Brian T; Santos, Margarida A; Mund, Andreas; Soria, Rebeca; Cho, Young-Wook; Pozdnyakova, Irina; Kubec Højfeldt, Martina; Lages Lino Vala, Andrea; Yang, Wenjing; López-Méndez, Blanca; Lee, Ji-Eun; Peng, Weiqun; Yuan, Joan; Ge, Kai; Montoya, Guillermo; Nussenzweig, André; Choudhary, Chuna Ram; Daniel, Jeremy A.

    In: Genes & Development, Vol. 30, No. 2, 15.01.2016, p. 149-163.

    Research output: Contribution to journalJournal articleResearchpeer-review

  409. Published

    TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress. / Hoffmann, Saskia; Smedegaard, Stine; Nakamura, Kyosuke; Mortuza, Gulnahar B; Räschle, Markus; Ibañez de Opakua, Alain; Oka, Yasuyoshi; Feng, Yunpeng; Blanco, Francisco J; Mann, Matthias; Montoya, Guillermo; Groth, Anja; Bekker-Jensen, Simon; Mailand, Niels.

    In: The Journal of Cell Biology, Vol. 212, No. 1, 04.01.2016, p. 63-75.

    Research output: Contribution to journalJournal articleResearchpeer-review

  410. Published

    The SIDER database of drugs and side effects. / Kuhn, Michael; Letunic, Ivica; Jensen, Lars Juhl; Bork, Peer.

    In: Nucleic Acids Research, Vol. 44, 04.01.2016, p. D1075-9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  411. Published

    eggNOG 4.5 : a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. / Huerta-Cepas, Jaime; Szklarczyk, Damian; Forslund, Kristoffer; Cook, Helen; Heller, Davide; Walter, Mathias C; Rattei, Thomas; Mende, Daniel R; Sunagawa, Shinichi; Kuhn, Michael; Jensen, Lars Juhl; von Mering, Christian; Bork, Peer.

    In: Nucleic Acids Research, Vol. 44, No. D1, 04.01.2016, p. D286-93.

    Research output: Contribution to journalJournal articleResearchpeer-review

  412. Published

    Methods for the identification of PTEN-targeting microRNAs. / Tuccoli, Andrea; Vitiello, Marianna; Marranci, Andrea; Russo, Francesco; Poliseno, Laura.

    Methods in Molecular Biology. Humana Press, 2016. p. 111-138 (Methods in Molecular Biology, Vol. 1388).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  413. Published

    KAP1 Is a Host Restriction Factor That Promotes Human Adenovirus E1B-55K SUMO Modification. / Bürck, Carolin; Mund, Andreas; Berscheminski, Julia; Kieweg, Lisa; Müncheberg, Sarah; Dobner, Thomas; Schreiner, Sabrina.

    In: Journal of Virology, Vol. 90, No. 2, 01.2016, p. 930-46.

    Research output: Contribution to journalJournal articleResearchpeer-review

  414. Published

    wKinMut-2 : Identification and Interpretation of Pathogenic Variants in Human Protein Kinases. / Vazquez, Miguel; Pons, Tirso; Brunak, Søren; Valencia, Alfonso; Izarzugaza, Jose M G.

    In: Human Mutation, Vol. 37, No. 1, 01.2016, p. 36-42.

    Research output: Contribution to journalJournal articleResearchpeer-review

  415. Published

    miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells. / Rasmussen, Mads Heilskov; Lyskjær, Iben; Jersie-Christensen, Rosa Rakownikow; Tarpgaard, Line Schmidt; Primdal-Bengtson, Bjarke; Nielsen, Morten Muhlig; Pedersen, Jakob Skou; Hansen, Tine Plato; Hansen, Flemming; Olsen, Jesper Velgaard; Pfeiffer, Per; Ørntoft, Torben Falck; Andersen, Claus Lindbjerg.

    In: Nature Communications, Vol. 7, 12436, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  416. Published

    A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase. / Hertz, Emil Peter Thrane; Kruse, Thomas; Davey, Norman E; López-Méndez, Blanca; Sigurdsson, Jón Otti; Montoya, Guillermo; Olsen, Jesper V; Nilsson, Jakob.

    In: Molecular Cell, Vol. 63, No. 4, 2016, p. 686-695.

    Research output: Contribution to journalJournal articleResearchpeer-review

  417. Published

    A genomic history of aboriginal Australia. / Malaspinas, Anna Sapfo; Westaway, Michael C.; Muller, Craig Edwin; Sousa, Vitor C.; Lao, Oscar; Alves, Isabel; Bergström, Anders; Athanasiadis, Georgios; Cheng, Jade Yu; Crawford, Jacob E.; Heupink, Tim H.; Macholdt, Enrico; Peischl, Stephan; Rasmussen, Simon; Schiffels, Stephan; Subramanian, Sankar; Wright, Joanne L; Albrechtsen, Anders; Barbieri, Chiara; Dupanloup, Isabelle; Eriksson, Anders; Margaryan, Ashot; Moltke, Ida; Pugach, Irina; Korneliussen, Thorfinn Sand; Levkivskyi, Ivan P.; Moreno Mayar, José Victor; Ni, Shengyu; Racimo, Fernando; Sikora, Martin; Xue, Yali; Aghakhanian, Farhang A.; Brucato, Nicolas; Brunak, Søren; Campos, Paula; Clark, Warren; Ellingvåg, Sturla; Fourmile, Gudjugudju; Gerbault, Pascale; Injie, Darren; Koki, George; Leavesley, Matthew; Logan, Betty; Lynch, Aubrey; Matisoo-Smith, Elizabeth A.; McAllister, Peter J.; Mentzer, Alexander J.; Metspalu, Mait; Migliano, Andrea B; Murgha, Les; Phipps, Maude E; Pomat, William; Reynolds, Doc; Ricaut, Francois-Xavier; Siba, Peter; Thomas, Mark G.; Wales, Thomas; Wall, Colleen Ma'run; Oppenheimer, Stephen J; Tyler-Smith, Chris; Durbin, Richard; Dortch, Joe; Manica, Andrea; Schierup, Mikkel H.; Foley, Robert A.; Lahr, Marta Mirazón; Bowern, Claire; Wall, Jeffrey D.; Mailund, Thomas; Stoneking, Mark; Nielsen, Rasmus; Sandhu, Manjinder S.; Excoffier, Laurent; Lambert, David M.; Willerslev, Eske.

    In: Nature, Vol. 538, No. 7624, 2016, p. 207-214.

    Research output: Contribution to journalJournal articleResearchpeer-review

  418. Published

    Analytic framework for peptidomics applied to large-scale neuropeptide identification. / Secher, Anna; Kelstrup, Christian D; Conde-Frieboes, Kilian W; Pyke, Charles; Raun, Kirsten; Wulff, Birgitte S; Olsen, Jesper V.

    In: Nature Communications, Vol. 7, 11436, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  419. Published

    ChemProt-3.0 : a global chemical biology diseases mapping. / Kringelum, Jens Vindahl; Kjærulff, Sonny Kim; Brunak, Søren; Lund, Ole; Oprea, Tudor I.; Taboureau, Olivier Thierry.

    In: Database, Vol. 2016, bav123, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  420. Published

    Conformation-specific anti-Mad2 monoclonal antibodies for the dissection of checkpoint signaling. / Sedgwick, Garry G; Larsen, Marie Sofie Yoo; Lischetti, Tiziana; Streicher, Werner; Jersie-Christensen, Rosa Rakownikow; Olsen, Jesper V; Nilsson, Jakob.

    In: mAbs, Vol. 8, No. 4, 2016, p. 689-697.

    Research output: Contribution to journalJournal articleResearchpeer-review

  421. Published

    EXTRACT : interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. / Pafilis, Evangelos; Buttigieg, Pier Luigi; Ferrell, Barbra; Pereira, Emiliano; Schnetzer, Julia; Arvanitidis, Christos; Jensen, Lars Juhl.

    In: Database, Vol. 2016, baw005, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  422. Published

    From Phosphosites to Kinases. / Munk, Stephanie; Refsgaard, Jan C; Olsen, Jesper V; Jensen, Lars J.

    Phospho-Proteomics: Methods and Protocols. ed. / Louise von Stechow. Vol. 1355 Springer, 2016. p. 307-21 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  423. Published

    Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). / Moseley, Pope Lloyd.

    In: Autophagy, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  424. Published

    Human gut microbes impact host serum metabolome and insulin sensitivity. / Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Nielsen, Henrik Bjørn; Hyotylainen, Tuulia; Nielsen, Trine; Jensen, Benjamin Anderschou Holbech; Forslund, Kristoffer; Hildebrand, Falk; Prifti, Edi; Falony, Gwen; Le Chatelier, Emmanuelle; Levenez, Florence; Doré, Joel; Mattila, Ismo; Plichta, Damian R.; Pöhö, Päivi; Hellgren, Lars I.; Arumugam, Manimozhiyan; Sunagawa, Shinichi; Vieira-Silva, Sara; Jørgensen, Torben; Holm, Jacob Bak; Trošt, Kajetan; Kristiansen, Karsten; Brix, Susanne; Raes, Jeroen; Wang, Jun; Hansen, Torben; Bork, Peer; Brunak, Søren; Oresic, Matej; Ehrlich, S Dusko; Pedersen, Oluf Borbye; MetaHIT Consortium.

    In: Nature, Vol. 535, No. 7612, 2016, p. 376-381.

    Research output: Contribution to journalJournal articleResearchpeer-review

  425. Published

    Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers. / Friis-Nielsen, Jens; Kjartansdóttir, Kristin Rós; Mollerup, Sarah; Asplund, Maria; Mourier, Tobias; Jensen, Randi Holm; Hansen, Thomas Arn; Rey de la Iglesia, Alba; Richter, Stine Raith; Nielsen, Ida Broman; Alquezar Planas, David Eugenio; Olsen, Pernille Vibeke Selmer; Vinner, Lasse; Fridholm, Eva Marie Helena; Nielsen, Lars Peter; Willerslev, Eske; Sicheritz-Pontén, Thomas; Lund, Ole; Hansen, Anders Johannes; Izarzugaza, Jose M. G.; Brunak, Søren.

    In: Viruses, Vol. 8, No. 2, 53, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  426. Published

    In Silico Systems Pharmacology to Assess Drug's Therapeutic and Toxic Effects. / Orozco, Alejandro Aguayo; Audouze, Karine; Brunak, Soren; Taboureau, Olivier.

    In: Current Pharmaceutical Design, Vol. 22, No. 46, 2016, p. 6895-6902.

    Research output: Contribution to journalJournal articleResearchpeer-review

  427. Published

    Large-scale biophysical evaluation of protein PEGylation effects : in vitro properties of 61 protein entities. / Vernet, Erik; Popa, Gina; Pozdnyakova, Irina; Rasmussen, Jakob Ewald; Grohganz, Holger; Giehm, Lise; Jensen, Malene Hillerup; Wang, Huabing; Plesner, Bitten; Nielsen, Hanne Mørck; Jensen, Knud Jørgen; Berthelsen, Jens; Sundström, Michael; van de Weert, Marco.

    In: Molecular Pharmaceutics, Vol. 13, No. 5, 2016, p. 1587-1598.

    Research output: Contribution to journalJournal articleResearchpeer-review

  428. Published

    Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls. / Belstrøm, Daniel; Jersie-Christensen, Rosa R; Lyon, David; Damgaard, Christian; Jensen, Lars J; Holmstrup, Palle; Olsen, Jesper V.

    In: PeerJ, Vol. 4, e2433, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  429. Published

    Mte1 interacts with Mph1 and promotes crossover recombination and telomere maintenance. / Pinela da Silva, Sonia Cristina; Altmannova, Veronika; Luke-Glaser, Sarah; Henriksen, Peter; Gallina, Irene; Yang, Xuejiao; Choudhary, Chuna Ram; Luke, Brian; Krejci, Lumir; Lisby, Michael.

    In: Genes & Development, Vol. 30, No. 6, 2016, p. 700-717.

    Research output: Contribution to journalJournal articleResearchpeer-review

  430. Published

    OUGENE : a disease associated over-expressed and under-expressed gene database. / Pan, Xiaoyong; Shen, Hong-Bin.

    In: Science Bulletin, Vol. 61, No. 10, 2016, p. 752-754.

    Research output: Contribution to journalLetterResearchpeer-review

  431. Published

    Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage. / Batth, Tanveer S; Olsen, Jesper V.

    Phospho-Proteomics: Methods and Protocols. ed. / Louise von Stechow. Vol. 1355 Springer, 2016. p. 179-92 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  432. Published

    One tagger, many uses : Illustrating the power of ontologies in dictionary-based named entity recognition. / Jensen, Lars Juhl.

    In: CEUR Workshop Proceedings, Vol. 1747, 2016.

    Research output: Contribution to journalConference articleResearchpeer-review

  433. Published

    Overview of the interactive task in BioCreative V. / Wang, Qinghua; S Abdul, Shabbir; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi I; Batista-Navarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Ferrell, Barbra; Fluck, Juliane; Gama-Castro, Socorro; George, Nancy; Gkoutos, Georgios; Irin, Afroza K; Jensen, Lars J; Jimenez, Silvia; Jue, Toni R; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Milacic, Marija; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Rothfels, Karen; Salgado, David; Silva, Raquel M; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa D; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-Aryamontri, Andrew; Laulederkind, Stanley J F; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Van Auken, Kimberly; Lu, Zhiyong; Schaeffer, Mary; Wu, Cathy H; Hirschman, Lynette; Arighi, Cecilia N.

    In: Database, Vol. 2016, baw119, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  434. Published

    Propionibacterium acnes : disease-causing agent or common contaminant? Detection in diverse patient samples by next-generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Hansen, Thomas Arn; Richter, Stine Raith; Fridholm, Eva Marie Helena; Herrera, Jose Alejandro Romero; Lund, Ole; Brunak, Søren; Izarzugaza, Jose M. G.; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, Vol. 54, No. 4, 2016, p. 980-987.

    Research output: Contribution to journalJournal articleResearchpeer-review

  435. Published

    Protein sequences bound to mineral surfaces persist into deep time. / Demarchi, Beatrice; Hall, Shaun; Roncal-Herrero, Teresa; Freeman, Colin L.; Woolley, Jos; Crisp, Molly K.; Wilson, Julie; Fotakis, Anna Katerina; Fischer, Roman; Kessler, Benedikt M.; Jersie-Christensen, Rosa Rakownikow; Olsen, Jesper Velgaard; Haile, James; Thomas, Jessica; Marean, Curtis W.; Parkington, John; Presslee, Samantha; Lee-Thorp, Julia; Ditchfield, Peter; Hamilton, Jacqueline F.; Ward, Martyn W.; Wang, Chunting Michelle; Shaw, Marvin D.; Harrison, Terry; Domínguez-Rodrigo, Manuel; MacPhee, Ross D. E.; Kwekason, Amandus; Ecker, Michaela; Kolska Horwitz, Liora; Chazan, Michael; Kröger, Roland; Thomas-Oates, Jane; Harding, John H.; Cappellini, Enrico; Penkman, Kirsty; Collins, Matthew James.

    In: eLife, Vol. 5, e17092, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  436. Published

    Proteomics of Skeletal Muscle : Focus on Insulin Resistance and Exercise Biology. / Deshmukh, Atul.

    In: Proteomes, Vol. 4, No. 1, 6, 2016.

    Research output: Contribution to journalReviewResearchpeer-review

  437. Published

    Ranking factors involved in diabetes remission after bariatric surgery using machine-learning integrating clinical and genomic biomarkers. / Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Pedersen, Mette Krogh; Brorsson, Caroline; Brunak, Søren; Gupta, Ramneek.

    In: npj Genomic Medicine, Vol. 1, 16035, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  438. Published

    Reduced Hsp70 and Glutamine in Pediatric Severe Malaria Anemia : Role of Hemozoin in Suppressing Hsp70 and NF-κB activation. / Kempaiah, Prakasha; Dokladny, Karol; Karim, Zachary; Raballah, Evans; Ong'echa, John M; Moseley, Pope L; Perkins, Douglas J.

    In: Molecular Medicine, Vol. 22, 2016, p. 570-584.

    Research output: Contribution to journalJournal articleResearchpeer-review

  439. Published

    Replication fork stability confers chemoresistance in BRCA-deficient cells. / Chaudhuri, Arnab Ray; Callen, Elsa; Ding, Xia; Gogola, Ewa; Duarte, Alexandra A; Lee, Ji-Eun; Wong, Nancy; Lafarga, Vanessa; Calvo, Jennifer A; Panzarino, Nicholas J; John, Sam; Day, Amanda; Crespo, Anna Vidal; Shen, Binghui; Starnes, Linda M; de Ruiter, Julian R; Daniel, Jeremy A; Konstantinopoulos, Panagiotis A; Cortez, David; Cantor, Sharon B; Fernandez-Capetillo, Oscar; Ge, Kai; Jonkers, Jos; Rottenberg, Sven; Sharan, Shyam K; Nussenzweig, André.

    In: Nature, Vol. 535, No. 7612, 2016, p. 382-7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  440. Published

    Ring of Change : CDC48/p97 Drives Protein Dynamics at Chromatin. / Franz, André; Ackermann, Leena; Hoppe, Thorsten.

    In: Frontiers in Genetics, Vol. 7, 2016, p. 73.

    Research output: Contribution to journalReviewResearchpeer-review

  441. Published

    Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota. / Palleja, Albert; Kashani, Alireza; Allin, Kristine Højgaard; Nielsen, Trine; Zhang, Chenchen; Li, Yin; Brach, Thorsten; Liang, Suisha; Feng, Qiang; Jørgensen, Nils Bruun; Bojsen-Møller, Kirstine N.; Dirksen, Carsten; Burgdorf, Kristoffer Sølvsten; Holst, Jens Juul; Madsbad, Sten; Wang, Jun; Pedersen, Oluf Borbye; Hansen, Torben; Arumugam, Manimozhiyan.

    In: Genome Medicine, Vol. 8, 67, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  442. Published

    SDCCAG8 Interacts with RAB Effector Proteins RABEP2 and ERC1 and Is Required for Hedgehog Signaling. / Airik, Rannar; Schueler, Markus; Airik, Merlin; Cho, Jang; Ulanowicz, Kelsey A; Porath, Jonathan D; Hurd, Toby W; Bekker-Jensen, Simon; Schrøder, Jacob Morville; Andersen, Jens S.; Hildebrandt, Friedhelm.

    In: P L o S One, Vol. 11, No. 5, e0156081, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  443. Published

    STITCH 5 : augmenting protein-chemical interaction networks with tissue and affinity data. / Szklarczyk, Damian; Santos Delgado, Alberto; von Mering, Christian; Jensen, Lars Juhl; Bork, Peer; Kuhn, Michael.

    In: Nucleic Acids Research, Vol. 44, No. D1, 2016, p. D380-84.

    Research output: Contribution to journalJournal articleResearchpeer-review

  444. Published

    SVD-phy : improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. / Franceschini, Andrea; Lin, Jianyi; von Mering, Christian; Jensen, Lars Juhl.

    In: Bioinformatics, Vol. 32, No. 7, 2016, p. 1085-7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  445. Published

    Search Databases and Statistics : Pitfalls and Best Practices in Phosphoproteomics. / Refsgaard, Jan C; Munk, Stephanie; Jensen, Lars J.

    Phospho-Proteomics: Methods and Protocols. ed. / Louise von Stechow. Vol. 1355 Springer Publishing Company, 2016. p. 323-39 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  446. Published

    Simple and Reproducible Sample Preparation for Single-Shot Phosphoproteomics with High Sensitivity. / Jersie-Christensen, Rosa R; Sultan, Abida; Olsen, Jesper V.

    Phospho-Proteomics: Methods and Protocols. ed. / Louise von Stechow. 2016. p. 251-60 (Methods in molecular biology (Clifton, N.J.), Vol. 1355).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  447. Published

    Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes. / Diehl, Carl; Wisniewska, Magdalena; Frick, Inga-Maria; Streicher, Werner; Björck, Lars; Malmström, Johan; Wikström, Mats.

    In: Frontiers in Microbiology, Vol. 7, 95, 2016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  448. Published

    Systems Analysis for Interpretation of Phosphoproteomics Data. / Munk, Stephanie; Refsgaard, Jan C; Olsen, Jesper V.

    Phospho-Proteomics: Methods and Protocols. ed. / Louise von Stechow. Vol. 1355 Springer, 2016. p. 341-60 (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  449. Published

    TEMPORAL ORDER OF DISEASE PAIRS AFFECTS SUBSEQUENT DISEASE TRAJECTORIES : THE CASE OF DIABETES AND SLEEP APNEA. / Beck, Mette K; Westergaard, David; Jensen, Anders Boeck; Groop, Leif; Brunak, Søren.

    In: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, Vol. 22, 2016, p. 380-389.

    Research output: Contribution to journalConference articleResearchpeer-review

  450. Published

    TOPBP1 regulates RAD51 phosphorylation and chromatin loading and determines PARP inhibitor sensitivity. / Moudry, Pavel; Watanabe, Kenji; Wolanin, Kamila M.; Bartkova, Jirina; Wassing, Isabel E.; Watanabe, Sugiko; Strauss, Robert; Pedersen, Rune Troelsgaard; Østergaard, Vibe Hallundbæk; Lisby, Michael; Andújar-Sánchez, Miguel; Maya-Mendoza, Apolinar; Esashi, Fumiko; Lukas, Jiri; Bartek, Jiri.

    In: The Journal of Cell Biology, Vol. 212, No. 3, 2016, p. 281-288.

    Research output: Contribution to journalJournal articleResearchpeer-review

  451. Published

    Tools and data services registry : a community effort to document bioinformatics resources. / Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans-Ioan; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C. E.; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 44, No. D1, 2016, p. D38-D47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  452. Published

    Two functionally distinct kinetochore pools of BubR1 ensure accurate chromosome segregation. / Zhang, Gang; Mendez, Blanca Lopez; Sedgwick, Garry G; Nilsson, Jakob.

    In: Nature Communications, Vol. 7, 12256, 2016, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  453. 2015
  454. Published

    Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy : a cohort study based on the Danish National Patient Register from 1996 to 2014. / Jensen, Anders Boeck; Ajslev, Teresa Adeltoft; Brunak, Søren; Sørensen, Thorkild I A.

    In: B M J Open, Vol. 5, e008702, 15.12.2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  455. Published

    MicroRNA 19a replacement partially rescues fin and cardiac defects in zebrafish model of Holt Oram syndrome. / Chiavacci, Elena; Daurizio, Romina; Guzzolino, Elena; Russo, Francesco; Baumgart, Mario; Groth, Marco; Mariani, Laura; Donofrio, Mara; Arisi, Ivan; Pellegrini, Marco; Cellerino, Alessandro; Cremisi, Federico; Pitto, Letizia.

    In: Scientific Reports, Vol. 5, 18240, 14.12.2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  456. Published

    Interaction of RECQ4 and MCM10 is important for efficient DNA replication origin firing in human cells. / Kliszczak, Maciej; Sedlackova, Hana; Pitchai, Ganesha P; Streicher, Werner W; Krejci, Lumir; Hickson, Ian D.

    In: OncoTarget, Vol. 6, No. 38, 01.12.2015, p. 40464-79.

    Research output: Contribution to journalJournal articleResearchpeer-review

  457. Published

    Mitochondrial specialization revealed by single muscle fiber proteomics : focus on the Krebs cycle. / Schiaffino, S; Reggiani, C; Kostrominova, T Y; Mann, M; Murgia, M.

    In: Scandinavian Journal of Medicine & Science in Sports, Vol. 25, No. Suppl 4, 12.2015, p. 41-8.

    Research output: Contribution to journalReviewResearchpeer-review

  458. Published

    p38- and MK2-dependent signalling promotes stress-induced centriolar satellite remodelling via 14-3-3-dependent sequestration of CEP131/AZI1. / Tollenaere, Maxim A X; Villumsen, Bine H; Blasius, Melanie; Nielsen, Julie C; Wagner, Sebastian A; Bartek, Jiri; Beli, Petra; Mailand, Niels; Bekker-Jensen, Simon.

    In: Nature Communications, Vol. 6, 10075, 30.11.2015, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  459. Published

    Crystal Structure of the Homing Endonuclease I-CvuI Provides a New Template for Genome Modification. / Molina, Rafael; Redondo, Pilar; López-Méndez, Blanca; Villate, Maider; Merino, Nekane; Blanco, Francisco J; Valton, Julien; Grizot, Silvestre; Duchateau, Phillipe; Prieto, Jesús; Montoya, Guillermo.

    In: The Journal of Biological Chemistry, Vol. 290, No. 48, 27.11.2015, p. 28727-36.

    Research output: Contribution to journalJournal articleResearchpeer-review

  460. Published

    Impact of microRNA-130a on the neutrophil proteome. / Pedersen, Corinna Cavan; Refsgaard, Jan Christian; Østergaard, Ole; Jensen, Lars Juhl; Heegaard, Niels Henrik Helweg; Borregaard, Niels; Cowland, Jack Bernard.

    In: B M C Immunology, Vol. 16, 70, 25.11.2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  461. Published

    Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage. / Thorslund, Tina; Ripplinger, Anita; Hoffmann, Saskia; Wild, Thomas; Uckelmann, Michael; Villumsen, Bine; Narita, Takeo; Sixma, Titia K; Choudhary, Chuna Ram; Bekker-Jensen, Simon; Mailand, Niels.

    In: Nature, Vol. 527, No. 7578, 19.11.2015, p. 389-93.

    Research output: Contribution to journalLetterResearchpeer-review

  462. Published

    Binding of the Multimodal Antidepressant Drug Vortioxetine to the Human Serotonin Transporter. / Andersen, Jacob; Ladefoged, Lucy Kate; Wang, Danyang; Kristensen, Trine N Bjerre; Bang-Andersen, Benny; Kristensen, Anders S; Schiøtt, Birgit; Strømgaard, Kristian.

    In: A C S Chemical Neuroscience, Vol. 6, No. 11, 18.11.2015, p. 1892-900.

    Research output: Contribution to journalJournal articleResearchpeer-review

  463. Published

    Protein kinase A stimulates Kv7.1 surface expression by regulating Nedd4-2-dependent endocytic trafficking. / Andersen, Martin Nybo; Hefting, Louise Leth; Steffensen, Annette Buur; Schmitt, Nicole; Olesen, Søren-Peter; Olsen, Jesper Velgaard; Lundby, Alicia; Rasmussen, Hanne Borger.

    In: American Journal of Physiology: Cell Physiology, Vol. 309, No. 10, 15.11.2015, p. C693-C706.

    Research output: Contribution to journalJournal articleResearchpeer-review

  464. Published

    Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow. / Deshmukh, Atul S; Cox, Juergen; Jensen, Lars Juhl; Meissner, Felix; Mann, Matthias.

    In: Journal of Proteome Research, Vol. 14, No. 11, 06.11.2015, p. 4885-95.

    Research output: Contribution to journalJournal articleResearchpeer-review

  465. Published

    Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions. / Weinert, Brian T; Moustafa, Tarek; Iesmantavicius, Vytautas; Zechner, Rudolf; Choudhary, Chuna Ram.

    In: E M B O Journal, Vol. 34, No. 21, 03.11.2015, p. 2620-2632.

    Research output: Contribution to journalJournal articleResearchpeer-review

  466. Published

    Large-Scale Identification of the Arginine Methylome by Mass Spectrometry. / Sylvestersen, Kathrine B; Nielsen, Michael L.

    Current Protocols in Protein Science. Vol. 82 2015. (Current Protocols in Protein Science).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  467. Published

    A lncRNA to repair DNA. / Lukas, Jiri; Altmeyer, Matthias.

    In: E M B O Reports, Vol. 16, No. 11, 11.2015, p. 1413-4.

    Research output: Contribution to journalComment/debateResearchpeer-review

  468. Published

    Avoiding abundance bias in the functional annotation of posttranslationally modified proteins. / Schölz, Christian; Lyon, David; Refsgaard, Jan C; Jensen, Lars Juhl; Choudhary, Chuna Ram; Weinert, Brian T.

    In: Nature Methods, Vol. 12, 11.2015, p. 1003-4.

    Research output: Contribution to journalComment/debateResearchpeer-review

  469. Published

    Functional and in silico assessment of MAX variants of unknown significance. / Comino-Méndez, Iñaki; Leandro-García, Luis J; Montoya, Guillermo; Inglada-Pérez, Lucía; de Cubas, Aguirre A; Currás-Freixes, María; Tysoe, Carolyn; Izatt, Louise; Letón, Rocío; Gómez-Graña, Álvaro; Mancikova, Veronika; Apellániz-Ruiz, María; Mannelli, Massimo; Schiavi, Francesca; Favier, Judith; Gimenez-Roqueplo, Anne-Paule; Timmers, Henri J L M; Roncador, Giovanna; Garcia, Juan F; Rodríguez-Antona, Cristina; Robledo, Mercedes; Cascón, Alberto.

    In: Journal of Molecular Medicine, Vol. 93, No. 11, 11.2015, p. 1247-55.

    Research output: Contribution to journalJournal articleResearchpeer-review

  470. Published

    Insights into the Genetic Susceptibility to Type 2 Diabetes from Genome-Wide Association Studies of Obesity-Related Traits. / Karaderi, Tugce; Drong, Alexander W.; Lindgren, Cecilia M.

    In: Current Diabetes Reports, Vol. 15, No. 10, 83, 22.10.2015.

    Research output: Contribution to journalReviewResearchpeer-review

  471. Published

    Biased Gs Versus Gq Proteins and β-Arrestin Signaling in the NK1 Receptor Determined by Interactions in the Water Hydrogen Bond Network. / Valentin-Hansen, Louise; Frimurer, Thomas M; Mokrosinski, Jacek; Holliday, Nicholas D; Schwartz, Thue W.

    In: The Journal of Biological Chemistry, Vol. 290, No. 40, 02.10.2015, p. 24495-508.

    Research output: Contribution to journalJournal articleResearchpeer-review

  472. Published

    The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape : A Large-Scale Genome-Wide Interaction Study. / Winkler, Thomas W; Justice, Anne E; Graff, Mariaelisa; Barata, Llilda; Feitosa, Mary F; Chu, Su; Czajkowski, Jacek; Esko, Tõnu; Fall, Tove; Kilpeläinen, Tuomas O; Lu, Yingchang; Mägi, Reedik; Mihailov, Evelin; Pers, Tune H; Rüeger, Sina; Teumer, Alexander; Ehret, Georg B; Ferreira, Teresa; Heard-Costa, Nancy L; Karjalainen, Juha; Lagou, Vasiliki; Mahajan, Anubha; Neinast, Michael D; Prokopenko, Inga; Simino, Jeannette; Teslovich, Tanya M; Jansen, Rick; Westra, Harm-Jan; White, Charles C; Absher, Devin; Ahluwalia, Tarun Veer Singh; Ahmad, Shafqat; Albrecht, Eva; Alves, Alexessander Couto; Bragg-Gresham, Jennifer L; de Craen, Anton J M; Bis, Joshua C; Bonnefond, Amélie; Boucher, Gabrielle; Banasik, Karina; Grarup, Niels; Hansen, Torben; Jørgensen, Torben; Krarup, Nikolaj T; Linneberg, Allan; Ribel-Madsen, Rasmus; Sparsø, Thomas H; Melbye, Mads; Pedersen, Oluf; Sørensen, Thorkild I A; CHARGE Consortium.

    In: P L o S Genetics, Vol. 11, No. 10, e1005378, 01.10.2015, p. 1-42.

    Research output: Contribution to journalJournal articleResearchpeer-review

  473. Published

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D'Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Soren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, Vol. 9, No. 9-10, 10.2015, p. 938–952.

    Research output: Contribution to journalJournal articleResearchpeer-review

  474. Published

    Galectin-3 binding protein links circulating microparticles with electron dense glomerular deposits in lupus nephritis. / Nielsen, C T; Østergaard, O; Rekvig, O P; Sturfelt, G; Jacobsen, S; Heegaard, N H H.

    In: Lupus, Vol. 24, No. 11, 10.2015, p. 1150-60.

    Research output: Contribution to journalJournal articleResearchpeer-review

  475. Published

    RNF138 joins the HR team. / Bekker-Jensen, Simon; Mailand, Niels.

    In: Nature Cell Biology, Vol. 17, No. 11, 10.2015, p. 1375-7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  476. Published

    Comparative Study of Different Methods for the Prediction of Drug-Polymer Solubility. / Knopp, Matthias Manne; Tajber, Lidia; Tian, Yiwei; Olesen, Niels Erik; Jones, David S; Kozyra, Agnieszka; Löbmann, Korbinian; Paluch, Krzysztof; Brennan, Claire Marie; Holm, René; Healy, Anne Marie; Andrews, Gavin P; Rades, Thomas.

    In: Molecular Pharmaceutics, Vol. 12, No. 9, 08.09.2015, p. 3408-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  477. Published

    Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits. / Acosta-Alvear, Diego; Cho, Min Y; Wild, Thomas; Buchholz, Tonia J; Lerner, Alana G; Simakova, Olga; Hahn, Jamie; Korde, Neha; Landgren, Ola; Maric, Irina; Choudhary, Chuna Ram; Walter, Peter; Weissman, Jonathan S; Kampmann, Martin.

    In: eLife, Vol. 4, e08153, 01.09.2015, p. 1-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  478. Published

    Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells. / Ding, Li; Paszkowski-Rogacz, Maciej; Winzi, Maria; Chakraborty, Debojyoti; Theis, Mirko; Singh, Sukhdeep; Ciotta, Giovanni; Poser, Ina; Roguev, Assen; Chu, Wai Kit; Choudhary, Chuna Ram; Mann, Matthias; Stewart, A Francis; Krogan, Nevan; Buchholz, Frank.

    In: Cell Systems, Vol. 1, No. 2, 26.08.2015, p. 141-151.

    Research output: Contribution to journalJournal articleResearchpeer-review

  479. Published

    Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose). / Altmeyer, Matthias; Neelsen, Kai J; Teloni, Federico; Pozdnyakova, Irina; Pellegrino, Stefania; Grøfte, Merete; Rask, Maj-Britt Druedahl; Streicher, Werner; Jungmichel, Stephanie; Nielsen, Michael Lund; Lukas, Jiri.

    In: Nature Communications, Vol. 6, 8088, 19.08.2015, p. 1-12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  480. Published

    Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations. / Hayes, M. Geoffrey; Urbanek, Margrit; Ehrmann, David A.; Armstrong, Loren L.; Lee, Ji Young; Sisk, Ryan; Karaderi, Tugce; Barber, Thomas M.; McCarthy, Mark I.; Franks, Stephen; Lindgren, Cecilia M.; Welt, Corrine K.; Diamanti-Kandarakis, Evanthia; Panidis, Dimitrios; Goodarzi, Mark O.; Azziz, Ricardo; Zhang, Yi; James, Roland G.; Olivier, Michael; Kissebah, Ahmed H.; Stener-Victorin, Elisabet; Legro, Richard S.; Dunaif, Andrea; Alvero, Ruben; Barnhart, Huiman X.; Baker, Valerie; Barnhart, Kurt T.; Bates, G. Wright; Brzyski, Robert G.; Carr, Bruce R.; Carson, Sandra A.; Casson, Peter; Cataldo, Nicholas A.; Christman, Gregory; Coutifaris, Christos; Diamond, Michael P.; Eisenberg, Esther; Gosman, Gabriella G.; Giudice, Linda C.; Haisenleder, Daniel J.; Huang, Hao; Krawetz, Stephen A.; Lucidi, Scott; McGovern, Peter G.; Myers, Evan R.; Nestler, John E.; Ohl, Dana; Santoro, Nanette; Schlaff, William D.; Snyder, Peter.

    In: Nature Communications, Vol. 6, 7502, 18.08.2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  481. Published

    Bub1/BubR1 : swiss army knives at kinetochores. / Nilsson, Jakob.

    In: Cell Cycle, Vol. 14, No. 9, 11.08.2015, p. 2999-3000.

    Research output: Contribution to journalEditorialResearchpeer-review

  482. Published

    SUMO and ubiquitin-dependent XPC exchange drives nucleotide excision repair. / Van Cuijk, Loes; Van Belle, Gijsbert J.; Turkyilmaz, Yasemin; Poulsen, Sara L.; Janssens, Roel C.; Theil, Arjan F.; Sabatella, Mariangela; Lans, Hannes; Mailand, Niels; Houtsmuller, Adriaan B.; Vermeulen, Wim; Marteijn, Jurgen A.

    In: Nature Communications, Vol. 6, 7499, 07.07.2015.

    Research output: Contribution to journalJournal articleResearchpeer-review

  483. Published

    Structure of dimeric and tetrameric complexes of the BAR domain protein PICK1 determined by small-angle X-Ray scattering. / Karlsen, Morten L.; Thorsen, Thor S.; Johner, Niklaus; Ammendrup-Johnsen, Ina; Erlendsson, Simon; Tian, Xinsheng; Simonsen, Jens B.; Hoiberg-Nielsen, Rasmus; Christensen, Nikolaj M.; Khelashvili, George; Streicher, Werner; Teilum, Kaare; Vestergaard, Bente; Weinstein, Harel; Gether, Ulrik; Arleth, Lise; Madsen, Kenneth L.

    In: Structure, Vol. 23, No. 7, 07.07.2015, p. 1258-1270.

    Research output: Contribution to journalJournal articleResearchpeer-review

  484. Published

    Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors. / Cifani, Paolo; Kirik, Ufuk; Waldemarson, Sofia; James, Peter.

    In: Journal of Proteome Research, Vol. 14, No. 7, 02.07.2015, p. 2819-27.

    Research output: Contribution to journalJournal articleResearchpeer-review

  485. Published

    Analysis of Continuous Glucose Monitoring in Pregnant Women With Diabetes : Distinct Temporal Patterns of Glucose Associated With Large-for-Gestational-Age Infants. / Law, Graham R; Ellison, George T H; Secher, Anna L; Damm, Peter; Mathiesen, Elisabeth R; Temple, Rosemary; Murphy, Helen R; Scott, Eleanor M.

    In: Diabetes Care, Vol. 38, No. 7, 07.2015, p. 1319-25.

    Research output: Contribution to journalJournal articleResearchpeer-review

  486. Published

    Downregulation of 5-HT7 Serotonin Receptors by the Atypical Antipsychotics Clozapine and Olanzapine. Role of Motifs in the C-Terminal Domain and Interaction with GASP-1. / Manfra, Ornella; Van Craenenbroeck, Kathleen; Skieterska, Kamila; Frimurer, Thomas; Schwartz, Thue W.; Levy, Finn Olav; Andressen, Kjetil Wessel.

    In: A C S Chemical Neuroscience, Vol. 6, No. 7, 07.2015, p. 1206–1218.

    Research output