The NNF Center for Protein Research

  1. 2019
  2. Published

    What outcomes are important to patients with mild cognitive impairment or Alzheimer's disease, their caregivers, and health-care professionals? A systematic review. / ROADMAP consortium.

    In: Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring, Vol. 11, 12.2019, p. 231-247.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Herpes Simplex Virus Type 1 infection is associated with suicidal behavior and first registered psychiatric diagnosis in a healthy population. / Nissen, Janna; Trabjerg, Betina; Pedersen, M G; Banasik, Karina; Pedersen, Ole Birger; Sørensen, Erik; Nielsen, Kaspar René; Erikstrup, Christian; Petersen, Mikkel Steen; Paarup, Helene Martina; Bruun-Rasmussen, Peter; Westergaard, David; Hansen, T F; Pedersen, Carsten B; Werge, Thomas; Torrey, Fuller; Hjalgrim, Henrik; Mortensen, Preben Bo; Yolken, Robert; Brunak, Søren; Ullum, Henrik; Burgdorf, K S.

    In: Psychoneuroendocrinology, Vol. 108, 10.2019, p. 150-154.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Selective autophagy maintains centrosome integrity and accurate mitosis by turnover of centriolar satellites. / Holdgaard, Søs Grønbæk; Cianfanelli, Valentina; Pupo, Emanuela; Lambrughi, Matteo; Lubas, Michal; Nielsen, Julie C; Eibes, Susana; Maiani, Emiliano; Harder, Lea M; Wesch, Nicole; Foged, Mads Møller; Maeda, Kenji; Nazio, Francesca; de la Ballina, Laura R; Dötsch, Volker; Brech, Andreas; Frankel, Lisa B; Jäättelä, Marja; Locatelli, Franco; Barisic, Marin; Andersen, Jens S; Bekker-Jensen, Simon; Lund, Anders H; Rogov, Vladimir V; Papaleo, Elena; Lanzetti, Letizia; De Zio, Daniela; Cecconi, Francesco.

    In: Nature Communications, Vol. 10, No. 1, 13.09.2019, p. 4176.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny. / Cappellini, Enrico; Welker, Frido; Pandolfi, Luca; Ramos-madrigal, Jazmín; Samodova, Diana; Rüther, Patrick L.; Fotakis, Anna K.; Lyon, David; Moreno-mayar, J. Víctor; Bukhsianidze, Maia; Rakownikow Jersie-christensen, Rosa; Mackie, Meaghan; Ginolhac, Aurélien; Ferring, Reid; Tappen, Martha; Palkopoulou, Eleftheria; Dickinson, Marc R.; Stafford, Thomas W.; Chan, Yvonne L.; Götherström, Anders; Nathan, Senthilvel K. S. S.; Heintzman, Peter D.; Kapp, Joshua D.; Kirillova, Irina; Moodley, Yoshan; Agusti, Jordi; Kahlke, Ralf-dietrich; Kiladze, Gocha; Martínez-navarro, Bienvenido; Liu, Shanlin; Sandoval Velasco, Marcela; Sinding, Mikkel-holger S.; Kelstrup, Christian D.; Allentoft, Morten E.; Orlando, Ludovic; Penkman, Kirsty; Shapiro, Beth; Rook, Lorenzo; Dalén, Love; Gilbert, M. Thomas P.; Olsen, Jesper V.; Lordkipanidze, David; Willerslev, Eske.

    In: Nature, 11.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Paracrine Crosstalk between Intestinal L- and D-cells Controls Secretion of Glucagon-Like Peptide-1 in mice. / Jepsen, Sara L; Grunddal, Kaare V; Wewer Albrechtsen, Nicolai J; Engelstoft, Maja S; Gabe, Maria B N; Jensen, Elisa P; Ørskov, Cathrine; Poulsen, Steen S; Rosenkilde, Mette M; Pedersen, Jens; Gribble, Fiona M; Reimann, Frank; Deacon, Carolyn F; Schwartz, Thue W; Christ, Andreas D; Martin, Rainer E; Holst, Jens J.

    In: A J P: Endocrinology and Metabolism (Online), 10.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog. / Tsutaya, Takumi; Mackie, Meaghan; Koenig, Claire; Sato, Takao; Weber, Andrzej W.; Kato, Hirofumi; Olsen, Jesper V.; Cappellini, Enrico.

    In: Scientific Reports, Vol. 9, No. 1, 12841, 06.09.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration. / IMI-DIRECT consortium.

    In: Journal of Hepatology, Vol. 71, No. 3, 01.09.2019, p. 594-602.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Incorporating symptom data in longitudinal disease trajectories for more detailed patient stratification. / Lademann, Martin; Lademann, Mette; Boeck Jensen, Anders; Brunak, Søren.

    In: International Journal of Medical Informatics, Vol. 129, 09.2019, p. 107-113.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. E-pub ahead of print

    Leveraging European infrastructures to access 1 million human genomes by 2022. / Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Béroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Søren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M; Korbel, Jan O; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyrönen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena.

    In: Nature Reviews. Genetics, 27.08.2019.

    Research output: Contribution to journalReviewResearchpeer-review

  11. E-pub ahead of print

    Transcriptome analysis in patients with temporal lobe epilepsy. / Kjær, Christina; Barzaghi, Guido; Bak, Lasse K; Goetze, Jens P; Yde, Christina Westmose; Woldbye, David; Pinborg, Lars H; Jensen, Lars Juhl.

    In: Brain, 26.08.2019.

    Research output: Contribution to journalLetterResearchpeer-review

  12. Published

    Distinct signatures of lung cancer types : aberrant mucin O-glycosylation and compromised immune response. / Lucchetta, Marta; da Piedade, Isabelle; Mounir, Mohamed; Vabistsevits, Marina; Terkelsen, Thilde; Papaleo, Elena.

    In: BMC Cancer, Vol. 19, No. 1, 20.08.2019, p. 824.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. E-pub ahead of print

    A Comparative Assessment Study of Known Small-Molecule Keap1-Nrf2 Protein-Protein Interaction Inhibitors : Chemical Synthesis, Binding Properties, and Cellular Activity. / Tran, Kim Tai; Pallesen, Jakob S; Solbak, Sara Marie Øie; Narayanan, Dilip; Baig, Amina; Zang, Jie; Aguayo-Orozco, Alejandro; Carmona, Rosa; Garcia, Anthony; Bach, Anders.

    In: Journal of Medicinal Chemistry, 14.08.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    The bio.tools registry of software tools and data resources for the life sciences. / Ison, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Ménager, Hervé; Kalaš, Matúš; Schwämmle, Veit; Grüning, Björn; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Vařeková, Radka Svobodová; Raček, Tomáš; Vondrášek, Jiří; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyrönen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpí, Josep; Zambelli, Federico; Savakis, Babis; Leskošek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Løngreen, Peter; Brunak, Søren.

    In: Genome Biology, Vol. 20, No. 1, 12.08.2019, p. 164.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation. / Rabl, Julius; Bunker, Richard D; Schenk, Andreas D; Cavadini, Simone; Gill, Mark E; Abdulrahman, Wassim; Andrés-Pons, Amparo; Luijsterburg, Martijn S; Ibrahim, Adel F M; Branigan, Emma; Aguirre, Jacob D; Marceau, Aimee H; Guérillon, Claire; Bouwmeester, Tewis; Hassiepen, Ulrich; Peters, Antoine H F M; Renatus, Martin; Gelman, Laurent; Rubin, Seth M; Mailand, Niels; van Attikum, Haico; Hay, Ronald T; Thomä, Nicolas H.

    In: Molecular Cell, Vol. 75, No. 3, 08.08.2019, p. 483-497.e9.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    ProtFus : A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins. / Tagore, Somnath; Gorohovski, Alessandro; Jensen, Lars Juhl; Frenkel-Morgenstern, Milana.

    In: PLOS Computational Biology, Vol. 15, No. 8, 08.2019, p. e1007239.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. E-pub ahead of print

    sAOP : Linking chemical stressors to Adverse Outcomes Pathway Networks. / Aguayo-Orozco, Alejandro; Audouze, Karine; Siggaard, Troels; Barouki, Robert; Brunak, Søren; Taboureau, Olivier.

    In: Bioinformatics (Online), 22.07.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. E-pub ahead of print

    Analysis and Interpretation of Protein Post-Translational Modification Site Stoichiometry. / Prus, Gabriela; Hoegl, Annabelle; Weinert, Brian T; Choudhary, Chunaram.

    In: Trends in Biochemical Sciences, 08.07.2019.

    Research output: Contribution to journalReviewResearchpeer-review

  19. Published

    Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology. / Spracklen, Cassandra N.; Karaderi, Tugce; Yaghootkar, Hanieh; Schurmann, Claudia; Fine, Rebecca S.; Kutalik, Zoltan; Preuss, Michael H.; Lu, Yingchang; Wittemans, Laura B.L.; Adair, Linda S.; Allison, Matthew; Amin, Najaf; Auer, Paul L.; Bartz, Traci M.; Blüher, Matthias; Boehnke, Michael; Borja, Judith B.; Bork-Jensen, Jette; Broer, Linda; Chasman, Daniel I.; Chen, Yii Der Ida; Chirstofidou, Paraskevi; Demirkan, Ayse; van Duijn, Cornelia M.; Feitosa, Mary F.; Garcia, Melissa E.; Graff, Mariaelisa; Grallert, Harald; Grarup, Niels; Guo, Xiuqing; Haesser, Jeffrey; Hansen, Torben; Harris, Tamara B.; Highland, Heather M.; Hong, Jaeyoung; Ikram, M. Arfan; Ingelsson, Erik; Jackson, Rebecca; Jousilahti, Pekka; Kähönen, Mika; Kizer, Jorge R.; Kovacs, Peter; Kriebel, Jennifer; Laakso, Markku; Lange, Leslie A.; Lehtimäki, Terho; Li, Jin; Lind, Lars; Kilpeläinen, Tuomas O.; Loos, Ruth J.F.

    In: American Journal of Human Genetics, Vol. 105, No. 1, 03.07.2019, p. 15-28.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes : descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium. / IMI-DIRECT consortium.

    In: Diabetologia, 15.06.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. E-pub ahead of print
  22. Published

    DBDS Genomic Cohort, a prospective and comprehensive resource for integrative and temporal analysis of genetic, environmental and lifestyle factors affecting health of blood donors. / Hansen, Thomas Folkmann; Banasik, Karina; Erikstrup, Christian; Pedersen, Ole Birger; Westergaard, David; Chmura, Piotr Jaroslaw; Nielsen, Kaspar; Thørner, Lise; Hjalgrim, Henrik; Paarup, Helene; Larsen, Margit Anita Hørup; Petersen, Mikkel; Jennum, Poul; Andersen, Steffen; Nyegaard, Mette; Jemec, Gregor Borut Ernst; Olesen, Jes; Werge, Thomas; Johansson, Pär I; Sørensen, Erik; Brunak, Søren; Ullum, Henrik; Burgdorf, Kristoffer Sølvsten.

    In: BMJ Open, Vol. 9, No. 6, e028401, 09.06.2019, p. 1-7.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Palaeoproteomics resolves sloth relationships. / Presslee, Samantha; Slater, Graham J; Pujos, François; Forasiepi, Analía M; Fischer, Roman; Molloy, Kelly; Mackie, Meaghan; Olsen, Jesper V; Kramarz, Alejandro; Taglioretti, Matías; Scaglia, Fernando; Lezcano, Maximiliano; Lanata, José Luis; Southon, John; Feranec, Robert; Bloch, Jonathan; Hajduk, Adam; Martin, Fabiana M; Salas Gismondi, Rodolfo; Reguero, Marcelo; de Muizon, Christian; Greenwood, Alex; Chait, Brian T; Penkman, Kirsty; Collins, Matthew; MacPhee, Ross D E.

    In: Nature Ecology & Evolution, 06.06.2019, p. 1121.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations. / Albrecht, Wiebke; Kappenberg, Franziska; Brecklinghaus, Tim; Stoeber, Regina; Marchan, Rosemarie; Zhang, Mian; Ebbert, Kristina; Kirschner, Hendrik; Grinberg, Marianna; Leist, Marcel; Moritz, Wolfgang; Cadenas, Cristina; Ghallab, Ahmed; Reinders, Jörg; Vartak, Nachiket; van Thriel, Christoph; Golka, Klaus; Tolosa, Laia; Castell, José V; Damm, Georg; Seehofer, Daniel; Lampen, Alfonso; Braeuning, Albert; Buhrke, Thorsten; Behr, Anne-Cathrin; Oberemm, Axel; Gu, Xiaolong; Kittana, Naim; van de Water, Bob; Kreiling, Reinhard; Fayyaz, Susann; van Aerts, Leon; Smedsrød, Bård; Ellinger-Ziegelbauer, Heidrun; Steger-Hartmann, Thomas; Gundert-Remy, Ursula; Zeigerer, Anja; Ullrich, Anett; Runge, Dieter; Lee, Serene M L; Schiergens, Tobias S; Kuepfer, Lars; Aguayo-Orozco, Alejandro; Sachinidis, Agapios; Edlund, Karolina; Gardner, Iain; Rahnenführer, Jörg; Hengstler, Jan G.

    In: Archives of Toxicology, Vol. 93, No. 6, 06.2019, p. 1609-1637.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. E-pub ahead of print

    Sacubitril/valsartan augments postprandial plasma concentrations of active GLP-1 when combined with sitagliptin in men. / Wewer Albrechtsen, Nicolai J; Mark, Peter D; Terzic, Dijana; Hansen, Lasse H; Andersen, Ulrik Ø; Hartmann, Bolette; Carr, Richard D; Gustafsson, Finn; Deacon, Carolyn F; Holst, Jens J; Goetze, Jens P; Plomgaard, Peter.

    In: The Journal of clinical endocrinology and metabolism, 10.05.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. E-pub ahead of print

    Contaminating viral sequences in high-throughput sequencing viromics : a linkage study of 700 sequencing libraries. / Asplund, Maria; Kjartansdóttir, Kristín Rós; Mollerup, Sarah; Vinner, Lasse; Fridholm, Helena; Herrera, José A R; Friis-Nielsen, Jens; Hansen, Thomas Arn; Jensen, Randi Holm; Nielsen, Ida Broman; Richter, Stine Raith; Rey-Iglesia, Alba; Matey-Hernandez, Maria Luisa; Alquezar-Planas, David E; Olsen, Pernille V S; Sicheritz-Pontén, Thomas; Willerslev, Eske; Lund, Ole; Brunak, Søren; Mourier, Tobias; Nielsen, Lars Peter; Izarzugaza, Jose M G; Hansen, Anders Johannes.

    In: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 03.05.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. E-pub ahead of print

    Regulation of GLI1 by cis DNA elements and epigenetic marks. / Taylor, Robert; Long, Jun; Yoon, Joon Won; Childs, Ronnie; Sylvestersen, Kathrine B; Nielsen, Michael L; Leong, King-Fu; Iannaccone, Stephen; Walterhouse, David O; Robbins, David J; Iannaccone, Philip.

    In: DNA Repair, Vol. 79, 02.05.2019, p. 10-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination. / Falcão, Ana Mendanha; Meijer, Mandy; Scaglione, Antonella; Rinwa, Puneet; Agirre, Eneritz; Liang, Jialiang; Larsen, Sara C; Heskol, Abeer; Frawley, Rebecca; Klingener, Michael; Varas-Godoy, Manuel; Raposo, Alexandre A S F; Ernfors, Patrik; Castro, Diogo S; Nielsen, Michael L; Casaccia, Patrizia; Castelo-Branco, Gonçalo.

    In: Cell Reports, Vol. 27, No. 4, 23.04.2019, p. 1090-1102.e10.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    FoxK1 and FoxK2 in insulin regulation of cellular and mitochondrial metabolism. / Sakaguchi, Masaji; Cai, Weikang; Wang, Chih-Hao; Cederquist, Carly T; Damasio, Marcos; Homan, Erica P; Batista, Thiago; Ramirez, Alfred K; Gupta, Manoj K; Steger, Martin; Wewer Albrechtsen, Nicolai J; Singh, Shailendra Kumar; Araki, Eiichi; Mann, Matthias; Enerbäck, Sven; Kahn, C Ronald.

    In: Nature Communications, Vol. 10, No. 1, 05.04.2019, p. 1582.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Molecular dynamics-guided discovery of an ago-allosteric modulator for GPR40/FFAR1. / Lückmann, Michael; Trauelsen, Mette; Bentsen, Marie A; Nissen, Tinne A D; Martins, Joao; Fallah, Zohreh; Nygaard, Mads M; Papaleo, Elena; Lindorff-Larsen, Kresten; Schwartz, Thue W; Frimurer, Thomas M.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, No. 14, 02.04.2019, p. 7123-7128.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Predicting treatment response using pharmacy register in migraine. / Hansen, Thomas Folkmann; Chalmer, Mona Ameri; Haspang, Thilde Marie; Kogelman, Lisette; Olesen, Jes.

    In: The Journal of Headache and Pain, Vol. 20, No. 1, 02.04.2019, p. 31.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The RIF1-PP1 Axis Controls Abscission Timing in Human Cells. / Bhowmick, Rahul; Thakur, Roshan Singh; Venegas, Andrés Bueno; Liu, Ying; Nilsson, Jakob; Barisic, Marin; Hickson, Ian D.

    In: Current biology : CB, Vol. 29, No. 7, 01.04.2019, p. 1232-1242.e5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. E-pub ahead of print

    The liver-alpha cell axis and type 2 diabetes. / Wewer Albrechtsen, Nicolai J; Pedersen, Jens; Galsgaard, Katrine D; Winther-Sørensen, Marie; Suppli, Malte P; Janah, Lina; Gromada, Jesper; Vilstrup, Hendrik; Knop, Filip K; Holst, Jens J.

    In: Endocrine Reviews, 28.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    GIGYF1/2-Driven Cooperation between ZNF598 and TTP in Posttranscriptional Regulation of Inflammatory Signaling. / Tollenaere, Maxim A X; Tiedje, Christopher; Rasmussen, Simon; Nielsen, Julie C; Vind, Anna C; Blasius, Melanie; Batth, Tanveer S; Mailand, Niels; Olsen, Jesper V; Gaestel, Matthias; Bekker-Jensen, Simon.

    In: Cell Reports, Vol. 26, No. 13, 26.03.2019, p. 3511-3521.e4.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    High-Resolution Structure of Cas13b and Biochemical Characterization of RNA Targeting and Cleavage. / Slaymaker, Ian M; Mesa, Pablo; Kellner, Max J; Kannan, Soumya; Brignole, Edward; Koob, Jeremy; Feliciano, Patricia R; Stella, Stefano; Abudayyeh, Omar O; Gootenberg, Jonathan S; Strecker, Jonathan; Montoya, Guillermo; Zhang, Feng.

    In: Cell Reports, Vol. 26, No. 13, 26.03.2019, p. 3741-3751.e5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. E-pub ahead of print

    SUMOylation promotes protective responses to DNA-protein crosslinks. / Borgermann, Nikoline; Ackermann, Leena; Schwertman, Petra; Hendriks, Ivo A; Thijssen, Karen; Liu, Julio Cy; Lans, Hannes; Nielsen, Michael L; Mailand, Niels.

    In: E M B O Journal, 26.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. E-pub ahead of print

    Functional Differences between Synaptic Mitochondria from the Striatum and the Cerebral Cortex. / Petersen, Maria Hvidberg; Willert, Cecilie Wennemoes; Andersen, Jens Velde; Waagepetersen, Helle Sønderby; Skotte, Niels Henning; Nørremølle, Anne.

    In: Neuroscience, Vol. 406, 13.03.2019, p. 432-443.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    The use of systems biology in chemical risk assessment. / Aguayo Orozco, Alejandro; Taboureau, Olivier Thierry; Brunak, Søren.

    In: Current Opinion in Toxicology, 12.03.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. E-pub ahead of print

    New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. / Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago C; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena.

    In: PLOS Computational Biology, Vol. 15, No. 3, 05.03.2019, p. e1006701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Enamel proteome sequences from Dmanisi (Georgia) enable molecular phylogeny beyond the limits of ancient DNA preservation. / Cappellini, Enrico; Welker, Frido; Olsen, Jesper V.; Lordkipanidze, David; Willerslev, Eske.

    In: American Journal of Physical Anthropology, Vol. 168, No. suppl. 68, 03.2019, p. 35-35.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  41. Published

    Palaeoproteomic analysis of Early Pleistocene Gigantopithecus blacki. / Welker, Frido; Ramos-Madrigal, Jazmin; Wang, Wei; Kuhlwilm, Martin; Montero, Marc De Manuel; Demeter, Fabrice; Lalueza-Fox, Carles; Marques-Bonet, Tomas; Olsen, Jesper V.; Cappellini, Enrico.

    In: American Journal of Physical Anthropology, Vol. 168, No. suppl. 68, 03.2019, p. 265-266.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  42. E-pub ahead of print

    Glucose and Amino Acid Metabolism in Mice Depend Mutually on Glucagon and Insulin Receptor Signaling. / Galsgaard, Katrine D; Winther-Sørensen, Marie; Pedersen, Jens; Kjeldsen, Sasha A S; Rosenkilde, Mette M; Wewer Albrechtsen, Nicolai J; Holst, Jens J.

    In: A J P: Endocrinology and Metabolism (Online), 26.02.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    SignalP 5.0 improves signal peptide predictions using deep neural networks. / Armenteros, José Juan Almagro; Tsirigos, Konstantinos; Sønderby, Casper Kaae; Petersen, Thomas Nordahl; Winther, Ole; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Biotechnology, Vol. 37, No. 4, 18.02.2019, p. 420-423.

    Research output: Contribution to journalJournal articleCommunication

  44. Published

    The severity of ankylosing spondylitis and responses to anti-tumour necrosis factor biologics are not influenced by the tumour necrosis factor receptor polymorphism incriminated in multiple sclerosis. / Watts, Laura; Karaderi, Tugce; Roberts, Amity; Appleton, Louise; Wordsworth, Tom; Cohen, Carla; Wordsworth, Paul; Vecellio, Matteo.

    In: Genes and Immunity, Vol. 20, No. 2, 01.02.2019, p. 167-171.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice. / Poupeau, Audrey; Garde, Christian; Sulek, Karolina; Citirikkaya, Kiymet; Treebak, Jonas T; Arumugam, Manimozhiyan; Simar, David; Olofsson, Louise E; Bäckhed, Fredrik; Barrès, Romain.

    In: FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 33, No. 2, 02.2019, p. 2719-2731.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Acetylation of intrinsically disordered regions regulates phase separation. / Saito, Makoto; Hess, Daniel; Eglinger, Jan; Fritsch, Anatol W; Kreysing, Moritz; Weinert, Brian T; Choudhary, Chunaram; Matthias, Patrick.

    In: Nature Chemical Biology, Vol. 15, No. 1, 01.2019, p. 51-61.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    53BP1 nuclear bodies enforce replication timing at under-replicated DNA to limit heritable DNA damage. / Spies, Julian; Lukas, Claudia; Somyajit, Kumar; Rask, Maj-Britt; Lukas, Jiri; Neelsen, Kai John.

    In: Nature Cell Biology, Vol. 21, 2019, p. 487-497.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    A Brief History of Protein Sorting Prediction. / Nielsen, Henrik; Tsirigos, Konstantinos D.; Brunak, Søren; von Heijne, Gunnar.

    In: The Protein Journal, Vol. 38, No. 3, 2019, p. 200-216.

    Research output: Contribution to journalReviewResearchpeer-review

  49. Published

    A Guide to Dictionary-Based Text Mining. / Cook, Helen V.; Jensen, Lars Juhl.

    Bioinformatics and Drug Discovery. ed. / Richard S. Larson; Tudor I. Oprea. Vol. 1939 3. ed. Humana Press, 2019. p. 73-89 (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  50. Published

    A chromatin-based signalling mechanism directs the switch from mutagenic to error-free repair of DNA double strand breaks. / Bartke, Till; Groth, Anja.

    In: Molecular & Cellular Oncology, Vol. 6, No. 4, 1605820, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    A generic deep convolutional neural network framework for prediction of receptor–ligand interactions - NetPhosPan : application to kinase phosphorylation prediction. / Fenoy, Emilio; Izarzugaza, Jose M.G.; Jurtz, Vanessa; Brunak, Søren; Nielsen, Morten.

    In: Bioinformatics, Vol. 35, No. 7, 2019, p. 1098-1107.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    A large-cohort, longitudinal study determines pre-cancer disease routes across different cancer types. / Hu, Jessica X; Helleberg, Marie; Jensen, Anders B; Brunak, Søren; Lundgren, Jens.

    In: Cancer Research, Vol. 79, No. 4, 2019, p. 864-872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    A quantitative Streptococcus pyogenes - human protein - protein interaction map reveals localization of opsonizing antibodies. / Happonen, Lotta; Hauri, Simon; Svensson Birkedal, Gabriel; Karlsson, Christofer; de Neergaard, Therese; Khakzad, Hamed; Nordenfelt, Pontus; Wikström, Mats; Wisniewska, Magdalena; Björck, Lars; Malmström, Lars; Malmström, Johan.

    In: Nature Communications, Vol. 10, 2727, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    ADAMTS9 regulates skeletal muscle insulin sensitivity through extracellular matrix alterations. / Graae, Anne-Sofie; Grarup, Niels; Ribel-Madsen, Rasmus; Lystbæk, Sara Hyldegaard; Boesgaard, Trine; Staiger, Harald; Fritsche, Andreas; Wellner, Niels; Sulek, Karolina; Kjølby, Mads Fuglsang; Backe, Marie Balslev; Chubanava, Sabina; Prats, Clara; Serup, Annette Karen Lundbeck; Birk, Jesper Bratz; Dubail, Johanne; Gillberg, Linn; Vienberg, Sara Gry; Nykjær, Anders; Kiens, Bente; Wojtaszewski, Jørgen; Larsen, Steen; Apte, Suneel S; Häring, Hans-Ulrich; Vaag, Allan; Zethelius, Björn; Pedersen, Oluf Borbye; Treebak, Jonas Thue; Hansen, Torben; Holst, Birgitte.

    In: Diabetes, Vol. 68, No. 3, 2019, p. 502-514.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Alternative Translation Initiation Generates a Functionally Distinct Isoform of the Stress-Activated Protein Kinase MK2. / Trulley, Philipp; Snieckute, Goda; Bekker-Jensen, Dorte; Menon, Manoj B; Freund, Robert; Kotlyarov, Alexey; Olsen, Jesper V; Diaz-Muñoz, Manuel D; Turner, Martin; Bekker-Jensen, Simon; Gaestel, Matthias; Tiedje, Christopher.

    In: Cell Reports, Vol. 27, No. 10, 2019, p. 2859-2870.e6.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    An advanced strategy for comprehensive profiling of ADP-ribosylation sites using mass spectrometry-based proteomics. / Hendriks, Ivo A.; Larsen, Sara C.; Nielsen, Michael L.

    In: Molecular and Cellular Proteomics, Vol. 18, No. 5, 2019, p. 1010-1026.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism. / Cuesta-Astroz, Yesid; Santos, Alberto; Oliveira, Guilherme; Jensen, Lars J.

    In: Frontiers in Immunology, Vol. 10, 212, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation. / Hansen, Bogi Karbech; Gupta, Rajat; Baldus, Linda; Lyon, David; Narita, Takeo; Lammers, Michael; Choudhary, Chunaram; Weinert, Brian T.

    In: Nature Communications, Vol. 10, 1055, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Associations between olfactory pathway gene methylation marks, obesity features and dietary intakes. / Ramos-Lopez, Omar; Riezu-Boj, Jose I.; Milagro, Fermin I.; Zulet, M. Angeles; Santos, Jose L.; Martinez, J. Alfredo; Astrup, Arne; Larsen, Thomas Meinert; MENA Project.

    In: Genes & Nutrition, Vol. 14, 11, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Bile acids drive colonic secretion of glucagon-like-peptide 1 and peptide-YY in rodents. / Christiansen, Charlotte Bayer; Trammell, Samuel Addison Jack; Albrechtsen, Nicolai Jacob Wewer; Schoonjans, Kristina; Albrechtsen, Reidar; Gillum, Matthew Paul; Kuhre, Rune Ehrenreich; Holst, Jens Juul.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 316, No. 5, 2019, p. G574-G584.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    BioReader : a text mining tool for performing classification of biomedical literature. / Simon, Christian; Davidsen, Kristian; Hansen, Christina; Seymour, Emily; Barnkob, Mike Bogetofte; Olsen, Lars Ronn.

    In: BMC Bioinformatics, Vol. 19, No. Suppl. 13, 57, 2019.

    Research output: Contribution to journalConference articleResearchpeer-review

  62. Published

    Bone Status in Obese, Non-diabetic, Antipsychotic-Treated Patients, and Effects of the Glucagon-Like Peptide-1 Receptor Agonist Exenatide on Bone Turnover Markers and Bone Mineral Density. / Eriksson, Robert; Broberg, Brian V.; Ishoy, Pelle L.; Bak, Nikolaj; Andersen, Ulrik B.; Jorgensen, Niklas R.; Knop, Filip K.; Ebdrup, Bjørn H.

    In: Frontiers in Psychiatry, Vol. 9, 781, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Breast milk alkylglycerols sustain beige adipocytes through adipose tissue macrophages. / Yu, Haidong; Dilbaz, Sedat; Coßmann, Jonas; Hoang, Anh Cuong; Diedrich, Victoria; Herwig, Annika; Harauma, Akiko; Hoshi, Yukino; Moriguchi, Toru; Landgraf, Kathrin; Körner, Antje; Lucas, Christina; Brodesser, Susanne; Balogh, Lajos; Thuróczy, Julianna; Karemore, Gopal; Kuefner, Michael Scott; Park, Edwards A; Rapp, Christine; Travers, Jeffrey Bryant; Röszer, Tamás.

    In: The Journal of Clinical Investigation, Vol. 129, No. 6, 2019, p. 2485-2499.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Citrullination of HP1γ chromodomain affects association with chromatin. / Wiese, Meike; Bannister, Andrew J; Basu, Srinjan; Boucher, Wayne; Wohlfahrt, Kai; Christophorou, Maria A; Nielsen, Michael L; Klenerman, David; Laue, Ernest D; Kouzarides, Tony.

    In: Epigenetics & Chromatin, Vol. 12, 21, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. E-pub ahead of print

    Clinical association to FKBP5 rs1360780 in patients with depression. / Dam, Henrik; Buch, Jens O D; Nielsen, Annelaura B; Weikop, Pia; Werge, Thomas; Jørgensen, Martin B.

    In: Psychiatric Genetics, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Accepted/In press

    CoCoScore : Context-aware co-occurrence scoring for text mining applications using distant supervision. / Junge, Alexander; Jensen, Lars Juhl.

    In: Bioinformatics (Online), 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Combined Ensemble Docking and Machine Learning in Identification of Therapeutic Agents with Potential Inhibitory Effect on Human CES1. / Briand, Eliane; Thomsen, Ragnar; Linnet, Kristian; Rasmussen, Henrik Berg; Brunak, Søren; Taboureau, Olivier.

    In: Molecules, Vol. 24, No. 15, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Combined GLP-1, Oxyntomodulin, and Peptide YY Improves Body Weight and Glycemia in Obesity and Prediabetes/Type 2 Diabetes : A Randomized Single-Blinded Placebo Controlled Study. / Behary, Preeshila; Tharakan, George; Alexiadou, Kleopatra; Johnson, Nicholas; Albrechtsen, Nicolai Jacob Wewer; Kenkre, Julia; Cuenco, Joyceline; Hope, David; Anyiam, Oluwaseun; Choudhury, Sirazum; Alessimii, Haya; Poddar, Ankur; Minnion, James; Doyle, Chedie; Frost, Gary; Le Roux, Carel; Purkayastha, Sanjay; Moorthy, Krishna; Dhillo, Waljit; Holst, Jens J; Ahmed, Ahmed R; Prevost, A Toby; Bloom, Stephen R; Tan, Tricia M.

    In: Diabetes Care, Vol. 42, No. 7, dc190449, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Combing the Hairball : Improving Visualization of miRNA-Target Interaction Networks. / Russo, Francesco; Hu, Jessica Xin; Romero Herrera, Jose Alejandro; Brunak, Søren.

    MicroRNA Target Identification: Methods and Protocols. ed. / Alessandro Laganà. Humana Press, 2019. p. 279-289 (Methods in Molecular Biology, Vol. 1970).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  70. E-pub ahead of print
  71. Published

    Comparison of quantitative trait loci methods : Total expression and allelic imbalance method in brain RNA-seq. / Gådin, Jesper R; Buil, Alfonso; Colantuoni, Carlo; Jaffe, Andrew E; Nielsen, Jacob; Shin, Joo-Heon; Hyde, Thomas M; Kleinman, Joel E; Plath, Niels; Eriksson, Per; Brunak, Søren; Didriksen, Michael; Weinberger, Daniel R; Folkersen, Lasse; BrainSeq Consortium.

    In: PLoS ONE, Vol. 14, No. 6, e0217765, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Accepted/In press

    Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men. / Jiang, Li; Audouze, Karine; Romero Herrera, Jose Alejandro; Ängquist, Lars Henrik; Kjærulff, Sonny Kim; Izarzugaza, Jose M. G.; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Sørensen, Thorkild I. A.; Brunak, Søren.

    In: Clinical Nutrition, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Cyprus Women's Health Research (COHERE) initiative : determining the relative burden of women's health conditions and related co-morbidities in an Eastern Mediterranean population. / Hocaoglu, M B; Gurkas, S; Karaderi, T.; Taneri, B; Erguler, K; Barin, B; Bilgin, E M; Eralp, G; Allison, M; Findikli, N; Boynukalin, K; Bahceci, M; Naci, H; Vincent, K; Missmer, S A; Becker, C M; Zondervan, K T; Rahmioglu, N.

    In: BMC Women's Health, Vol. 19, 50, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Cytoscape stringApp : Network analysis and visualization of proteomics data. / Doncheva, Nadezhda T; Morris, John; Gorodkin, Jan; Jensen, Lars J.

    In: Journal of Proteome Research, Vol. 18, No. 2, 2019, p. 623-632.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Design, implementation, and operation of a rapid, robust named entity recognition web service. / Pletscher-Frankild, Sune; Jensen, Lars Juhl.

    In: Journal of Cheminformatics, Vol. 11, 19, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Dynamics of the Eukaryotic Replicative Helicase at Lagging-Strand Protein Barriers Support the Steric Exclusion Model. / Kose, Hazal B.; Larsen, Nicolai B.; Duxin, Julien P.; Yardimci, Hasan.

    In: Cell Reports, Vol. 26, No. 8, 2019, p. 2113-2125.e6.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Effects of Acute GLP-1 Infusion on Pulmonary and Systemic Hemodynamics in Patients With Heart Failure : A Pilot Study. / Clarke, Sophie J.; Pettit, Stephen; Giblett, Joel P.; Zhao, Tian; Kydd, Anna C.; Albrechtsen, Nicolai J. W.; Deacon, Carolyn F.; Parameshwar, Jayan; Hoole, Stephen P.

    In: Clinical Therapeutics, Vol. 41, No. 1, 2019, p. 118-127.e0.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex. / Zhang, Gang; Kruse, Thomas; Guasch Boldú, Claudia; Garvanska, Dimitriya H; Coscia, Fabian; Mann, Matthias; Barisic, Marin; Nilsson, Jakob.

    In: E M B O Journal, Vol. 38, No. 7, e100977, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Enhanced cerebral branched-chain amino acid metabolism in R6/2 mouse model of Huntington's disease. / Andersen, Jens V.; Skotte, Niels H.; Aldana, Blanca I.; Nørremølle, Anne; Waagepetersen, Helle S.

    In: Cellular and Molecular Life Sciences, Vol. 76, No. 12, 2019, p. 2449-2461.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium. / Russo, D. A.; Zedler, J. A. Z.; Wittmann, D. N.; Möllers, B.; Singh, R. K.; Batth, T. S.; van Oort, B.; Olsen, J. V.; Bjerrum, M. J.; Jensen, P. E.

    In: Biotechnology for Biofuels, Vol. 12, No. 1, 74, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Functions and mechanisms of non-histone protein acetylation. / Narita, Takeo; Weinert, Brian T; Choudhary, Chunaram.

    In: Nature Reviews. Molecular Cell Biology, Vol. 20, 2019, p. 156-174.

    Research output: Contribution to journalReviewResearchpeer-review

  82. Published

    Genomic characterization of cyanophage vB_AphaS-CL131 infecting filamentous diazotrophic cyanobacterium Aphanizomenon flos-aquae reveals novel insights into virus-bacterium interactions. / Šulčius, Sigitas; Šimoliūnas, Eugenijus; Alzbutas, Gediminas; Gasiūnas, Giedrius; Jauniškis, Vykintas; Kuznecova, Jolita; Miettinen, Sini; Nilsson, Emelie; Meškys, Rolandas; Roine, Elina; Paškauskas, Ričardas; Holmfeldt, Karin.

    In: Applied and Environmental Microbiology, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Glucagon Receptor Signaling and Glucagon Resistance. / Janah, Lina; Kjeldsen, Sasha; Galsgaard, Katrine D.; Winther-Sorensen, Marie; Stojanovska, Elena; Pedersen, Jens; Knop, Filip K.; Holst, Jens J.; Albrechtsen, Nicolai J. Wewer.

    In: International Journal of Molecular Sciences, Vol. 20, No. 13, 3314, 2019.

    Research output: Contribution to journalReviewResearchpeer-review

  84. Published

    Glucagon Receptor Signaling and Lipid Metabolism. / Galsgaard, Katrine D; Pedersen, Jens; Knop, Filip K; Holst, Jens J; Wewer Albrechtsen, Nicolai J.

    In: Frontiers in Physiology, Vol. 10, 413, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Half-Life Extending Modifications of Peptide YY3-36 Direct Receptor-Mediated Internalization. / Bech, Esben M.; Kaiser, Anette; Bellmann-Sickert, Kathrin; Nielsen, Søren S.-R.; Sørensen, Kasper K.; Elster, Lisbeth; Hatzakis, Nikos; Pedersen, Søren L.; Beck-Sickinger, Annette G.; Jensen, Knud J.

    In: Molecular Pharmaceutics, Vol. 16, No. 8, 2019, p. 3665-3677.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites. / Li, Xuanji; Brejnrod, Asker Daniel; Ernst, Madeleine; Rykær, Martin; Herschend, Jakob; Olsen, Nanna Mee Coops; Dorrestein, Pieter C.; Rensing, Christopher; Sørensen, Søren Johannes.

    In: Environment International, Vol. 126, 2019, p. 454-467.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Identification of ADAM12 as a Novel Basigin Sheddase. / Albrechtsen, Reidar; Wewer Albrechtsen, Nicolai J; Gnosa, Sebastian; Schwarz, Jeanette; Dyrskjøt, Lars; Kveiborg, Marie.

    In: International Journal of Molecular Sciences , Vol. 20, No. 8, 2019, p. 1-14.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Identification of Disease-miRNA Networks Across Different Cancer Types Using SWIM. / Fiscon, Giulia; Conte, Federica; Farina, Lorenzo; Pellegrini, Marco; Russo, Francesco; Paci, Paola.

    MicroRNA Target Identification: Methods and Protocols. ed. / Alessandro Laganà. Humana Press, 2019. p. 169-181 (Methods in Molecular Biology, Vol. 1970).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  89. Published

    Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types. / Hjaltelin, Jessica Xin; Izarzugaza, Jose M G; Jensen, Lars Juhl; Russo, Francesco; Westergaard, David; Brunak, Søren.

    In: npj Systems Biology and Applications, Vol. 5, 2019, p. 27.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Immunity and mental illness : findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders. / Nudel, Ron; Benros, Michael E; Krebs, Morten Dybdahl; Allesøe, Rosa Lundbye; Lemvigh, Camilla Koldbæk; Bybjerg-Grauholm, Jonas; Børglum, Anders D; Daly, Mark J; Nordentoft, Merete; Mors, Ole; Hougaard, David M; Mortensen, Preben Bo; Buil, Alfonso; Werge, Thomas; Rasmussen, Simon; Thompson, Wesley K.

    In: European Journal of Human Genetics, Vol. 27, 2019, p. 1445-1455.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models. / Kirik, Ufuk; Refsgaard, Jan C.; Jensen, Lars J.

    In: Journal of Proteome Research, Vol. 18, No. 6, 2019, p. 2385-2396.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Inferring disease-associated long non-coding RNAs using genome - wide tissue expression profiles. / Pan, Xiaoyong; Jensen, Lars Juhl; Gorodkin, Jan.

    In: Bioinformatics, Vol. 35, No. 9, 2019, p. 1494-1502.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Insights into mitotic checkpoint by integrating CRISPR and RNAi. / Zhang, Gang.

    In: Molecular & Cellular Oncology, Vol. 6, No. 4, 1603436, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells. / Samudyata; Amaral, Paulo P.; Engström, Pär G.; Robson, Samuel C.; Nielsen, Michael L.; Kouzarides, Tony; Castelo-Branco, Gonçalo.

    In: Experimental Cell Research, Vol. 381, No. 1, 2019, p. 129-138.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Large-scale study of Toxoplasma and Cytomegalovirus shows an association between infection and serious psychiatric disorders. / Burgdorf, Kristoffer Sølvsten; Trabjerg, Betina; Giørtz Pedersen, Marianne; Nissen, Janna; Banasik, Karina; Birger Pedersen, Ole; Sørensen, Erik; René Nielsen, Kaspar; Hørup Larsen, Margit; Erikstrup, Christian; Bruun-Rasmussen, Peter; Westergaard, David; Wegner Thørner, Lise; Hjalgrim, Henrik; Martina Paarup, Helene; Brunak, Søren; Pedersen, Carsten B.; Fuller Torrey, E; Werge, Thomas; Bo Mortensen, Preben; Yolken, Robert; Ullum, Henrik.

    In: Brain, Behavior, and Immunity, Vol. 79, 2019, p. 152-158.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    MaxQuant.Live enables global targeting of more than 25,000 peptides. / Wichmann, Christoph; Meier, Florian; Virreira Winter, Sebastian; Brunner, Andreas-David; Cox, Jürgen; Mann, Matthias.

    In: Molecular and Cellular Proteomics, Vol. 18, No. 5, 2019, p. 982-994.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Mechanisms preserving insulin action during high dietary fat intake. / Lundsgaard, Annemarie; Holm, Jacob Bak; Sjøberg, Kim Anker; Bojsen-Møller, Kirstine N; Myrmel, Lene S; Fjære, Even; Jensen, Benjamin Anderschou Holbech; Nicolaisen, Trine Sand; Hingst, Janne Rasmuss; Hansen, Sine L; Doll, Sophia; Geyer, Philip E; Deshmukh, Atul Shahaji; Holst, Jens Juul; Madsen, Lise; Kristiansen, Karsten; Wojtaszewski, Jørgen; Richter, Erik; Kiens, Bente.

    In: Cell Metabolism, Vol. 29, No. 1, 2019, p. 50-63, e1-e4.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Molecular architecture of the Jumonji C family histone demethylase KDM5B. / Dorosz, Jerzy; Kristensen, Line Hyltoft; Aduri, Nanda G; Mirza, Osman; Lousen, Rikke; Bucciarelli, Saskia; Mehta, Ved; Sellés-Baiget, Selene; Solbak, Sara Marie Øie; Bach, Anders; Mesa, Pablo; Hernandez, Pablo Alcon; Montoya, Guillermo; Nguyen, Tam T. T. N.; Rand, Kasper D.; Boesen, Thomas; Gajhede, Michael.

    In: Scientific Reports, Vol. 9, 4019, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage. / Lahm, Harald; Dressen, Martina; Beck, Nicole; Doppler, Stefanie; Deutsch, Marcus-Andre; Matsushima, Shunsuke; Neb, Irina; Koenig, Karl Christian; Sideris, Konstantinos; Voss, Stefanie; Eschenbach, Lena; Puluca, Nazan; Deisenhofer, Isabel; Doll, Sophia; Holdenrieder, Stefan; Mann, Matthias; Lange, Ruediger; Krane, Markus.

    In: Scientific Reports, Vol. 9, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants. / Doncheva, Nadezhda T.; Domingues, Francisco S.; McGivern, David R.; Shimakami, Tetsuro; Zeuzem, Stefan; Lengauer, Thomas; Lange, Christian M.; Albrecht, Mario; Welsch, Christoph.

    In: Journal of Molecular Biology, Vol. 431, No. 12, 2019, p. 2354-2368.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published
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