The NNF Center for Protein Research

  1. 2016
  2. Published

    TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress

    Hoffmann, Saskia, Smedegaard, S., Nakamura, Kyosuke, Mortuza, G. B., Räschle, M., Ibañez de Opakua, A., Oka, Y., Feng, Y., Blanco, F. J., Mann, Matthias, Montoya, Guillermo, Groth, Anja, Bekker-Jensen, Simon Holst & Mailand, Niels, 4 Jan 2016, In : The Journal of Cell Biology. 212, 1, p. 63-75

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    The SIDER database of drugs and side effects

    Kuhn, M., Letunic, I., Jensen, Lars Juhl & Bork, P., 4 Jan 2016, In : Nucleic Acids Research. 44, p. D1075-9

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

    Huerta-Cepas, J., Szklarczyk, D., Forslund, K., Cook, H., Heller, D., Walter, M. C., Rattei, T., Mende, D. R., Sunagawa, S., Kuhn, M., Jensen, Lars Juhl, von Mering, C. & Bork, P., 4 Jan 2016, In : Nucleic Acids Research. 44, D1, p. D286-93

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Methods for the identification of PTEN-targeting microRNAs

    Tuccoli, A., Vitiello, M., Marranci, A., Russo, Francesco & Poliseno, L., 1 Jan 2016, Methods in Molecular Biology. Humana Press, p. 111-138 28 p. (Methods in Molecular Biology, Vol. 1388).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  6. Published

    KAP1 Is a Host Restriction Factor That Promotes Human Adenovirus E1B-55K SUMO Modification

    Bürck, C., Mund, Andreas, Berscheminski, J., Kieweg, L., Müncheberg, S., Dobner, T. & Schreiner, S., Jan 2016, In : Journal of Virology. 90, 2, p. 930-46 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases

    Vazquez, M., Pons, T., Brunak, Søren, Valencia, A. & Izarzugaza, J. M. G., Jan 2016, In : Human Mutation. 37, 1, p. 36-42 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

    Rasmussen, M. H., Lyskjær, I., Jersie-Christensen, R. R., Tarpgaard, L. S., Primdal-Bengtson, B., Nielsen, M. M., Pedersen, J. S., Kuhlmann, Tine Plato, Hansen, F., Olsen, Jesper Velgaard, Pfeiffer, P., Ørntoft, T. F. & Andersen, C. L., 2016, In : Nature Communications. 7, 15 p., 12436.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase

    Hertz, Emil Peter Thrane, Kruse, Thomas, Davey, N. E., López-Méndez, B., Sigurdsson, J. O., Montoya, Guillermo, Olsen, Jesper Velgaard & Nilsson, Jakob, 2016, In : Molecular Cell. 63, 4, p. 686-695 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    A genomic history of aboriginal Australia

    Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, Simon, Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, Anders, Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, Ashot, Moltke, Ida, Pugach, I., Korneliussen, Thorfinn Sand, Levkivskyi, I. P., Moreno Mayar, José Victor, Ni, S., Racimo, F., Sikora, Martin, Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, Søren, Campos, P., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, Rasmus, Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, Eske, 2016, In : Nature. 538, 7624, p. 207-214 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Analytic framework for peptidomics applied to large-scale neuropeptide identification

    Secher, A., Kelstrup, C. D., Conde-Frieboes, K. W., Pyke, C., Raun, K., Wulff, B. S. & Olsen, Jesper Velgaard, 2016, In : Nature Communications. 7, 10 p., 11436.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    ChemProt-3.0: a global chemical biology diseases mapping

    Kringelum, J. V., Kjærulff, S. K., Brunak, Søren, Lund, O., Oprea, T. I. & Taboureau, Olivier Thierry, 2016, In : Database. 2016, 7 p., bav123.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Conformation-specific anti-Mad2 monoclonal antibodies for the dissection of checkpoint signaling

    Sedgwick, G. G., Larsen, M. S. Y., Lischetti, T., Streicher, W., Jersie-Christensen, R. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2016, In : mAbs. 8, 4, p. 689-697 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

    Pafilis, E., Buttigieg, P. L., Ferrell, B., Pereira, E., Schnetzer, J., Arvanitidis, C. & Jensen, Lars Juhl, 2016, In : Database. 2016, 7 p., baw005.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    From Phosphosites to Kinases

    Munk, S., Refsgaard, J. C., Olsen, Jesper Velgaard & Jensen, Lars Juhl, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 307-21 15 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  16. Published

    Human gut microbes impact host serum metabolome and insulin sensitivity

    Pedersen, H. K., Gudmundsdottir, V., Nielsen, H. B., Hyotylainen, T., Nielsen, Trine, Jensen, Benjamin Anderschou Holbech, Forslund, K., Hildebrand, F., Prifti, E., Falony, G., Le Chatelier, E., Levenez, F., Doré, J., Mattila, I., Plichta, D. R., Pöhö, P., Hellgren, L. I., Arumugam, Mani, Sunagawa, S., Vieira-Silva, S., Jørgensen, T., Holm, J. B., Trošt, K., Kristiansen, Karsten, Brix, Susanne, Raes, J., Wang, J., Hansen, Torben, Bork, P., Brunak, Søren, Oresic, M., Ehrlich, S. D., Pedersen, Oluf Borbye & MetaHIT Consortium, M. C., 2016, In : Nature. 535, 7612, p. 376-381 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

    Friis-Nielsen, J., Kjartansdóttir, K. R., Mollerup, S., Asplund, M., Mourier, T., Jensen, R. H., Hansen, T. A., Rey de la Iglesia, Alba, Richter, S. R., Nielsen, Ida Broman, Alquezar Planas, D. E., Olsen, Pernille Vibeke Selmer, Vinner, Lasse, Fridholm, E. M. H., Nielsen, L. P., Willerslev, Eske, Sicheritz-Pontén, T., Lund, O., Hansen, Anders Johannes, Izarzugaza, J. M. G. & Brunak, Søren, 2016, In : Viruses. 8, 2, 16 p., 53.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    In Silico Systems Pharmacology to Assess Drug's Therapeutic and Toxic Effects

    Aguayo Orozco, Alejandro, Audouze, K., Brunak, Søren & Taboureau, Olivier Thierry, 2016, In : Current Pharmaceutical Design. 22, 46, p. 6895-6902 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Large-scale biophysical evaluation of protein PEGylation effects: in vitro properties of 61 protein entities

    Vernet, E., Popa, G., Pozdnyakova, I., Rasmussen, J. E., Grohganz, Holger, Giehm, L., Jensen, M. H., Wang, H., Plesner, B., Nielsen, Hanne Mørck, Jensen, Knud Jørgen, Berthelsen, J., Sundström, M. & van de Weert, Marco, 2016, In : Molecular Pharmaceutics. 13, 5, p. 1587-1598 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls

    Belstrøm, Daniel, Jersie-Christensen, R. R., Lyon, D., Damgaard, Christian, Jensen, Lars Juhl, Holmstrup, Palle & Olsen, Jesper Velgaard, 2016, In : PeerJ. 4, 17 p., e2433.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Mte1 interacts with Mph1 and promotes crossover recombination and telomere maintenance

    Pinela da Silva, S. C., Altmannova, V., Luke-Glaser, S., Henriksen, P., Gallina, Irene, Yang, X., Choudhary, Chuna Ram, Luke, B., Krejci, L. & Lisby, Michael, 2016, In : Genes & Development. 30, 6, p. 700-717 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    OUGENE: a disease associated over-expressed and under-expressed gene database

    Pan, X. & Shen, H., 2016, In : Science Bulletin. 61, 10, p. 752-754 3 p.

    Research output: Contribution to journalLetterResearchpeer-review

  23. Published

    Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage

    Batth, Tanveer Singh & Olsen, Jesper Velgaard, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 179-92 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  24. Published

    One tagger, many uses: Illustrating the power of ontologies in dictionary-based named entity recognition

    Jensen, Lars Juhl, 2016, In : CEUR Workshop Proceedings. 1747, 2 p.

    Research output: Contribution to journalConference articleResearchpeer-review

  25. Published

    Overview of the interactive task in BioCreative V

    Wang, Q., S Abdul, S., Almeida, L., Ananiadou, S., Balderas-Martínez, Y. I., Batista-Navarro, R., Campos, D., Chilton, L., Chou, H., Contreras, G., Cooper, L., Dai, H., Ferrell, B., Fluck, J., Gama-Castro, S., George, N., Gkoutos, G., Irin, A. K., Jensen, Lars Juhl, Jimenez, S., Jue, T. R., Keseler, I., Madan, S., Matos, S., McQuilton, P., Milacic, M., Mort, M., Natarajan, J., Pafilis, E., Pereira, E., Rao, S., Rinaldi, F., Rothfels, K., Salgado, D., Silva, R. M., Singh, O., Stefancsik, R., Su, C., Subramani, S., Tadepally, H. D., Tsaprouni, L., Vasilevsky, N., Wang, X., Chatr-Aryamontri, A., Laulederkind, S. J. F., Matis-Mitchell, S., McEntyre, J., Orchard, S., Pundir, S., Rodriguez-Esteban, R., Van Auken, K., Lu, Z., Schaeffer, M., Wu, C. H., Hirschman, L. & Arighi, C. N., 2016, In : Database. 2016, 18 p., baw119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next-generation sequencing

    Mollerup, S., Friis-Nielsen, J., Vinner, Lasse, Hansen, T. A., Richter, S. R., Fridholm, E. M. H., Herrera, J. A. R., Lund, O., Brunak, Søren, Izarzugaza, J. M. G., Mourier, T., Nielsen, L. P. & Hansen, Anders Johannes, 2016, In : Journal of Clinical Microbiology. 54, 4, p. 980-987 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Protein sequences bound to mineral surfaces persist into deep time

    Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., Wilson, J., Fotaki, Anna Katerina, Fischer, R., Kessler, B. M., Jersie-Christensen, R. R., Olsen, Jesper Velgaard, Haile, J., Thomas, J., Marean, C. W., Parkington, J., Presslee, S., Lee-Thorp, J., Ditchfield, P., Hamilton, J. F., Ward, M. W., Wang, C. M., Shaw, M. D., Harrison, T., Domínguez-Rodrigo, M., MacPhee, R. D. E., Kwekason, A., Ecker, M., Kolska Horwitz, L., Chazan, M., Kröger, R., Thomas-Oates, J., Harding, J. H., Cappellini, Enrico, Penkman, K. & Collins, Matthew James, 2016, In : eLife. 5, 50 p., e17092.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Proteomics of Skeletal Muscle: Focus on Insulin Resistance and Exercise Biology

    Deshmukh, A., 2016, In : Proteomes. 4, 1, 19 p., 6.

    Research output: Contribution to journalReviewResearchpeer-review

  29. Published

    Ranking factors involved in diabetes remission after bariatric surgery using machine-learning integrating clinical and genomic biomarkers

    Pedersen, Helle Krogh, Gudmundsdottir, V., Pedersen, M. K., Brorsson, C., Brunak, Søren & Gupta, R., 2016, In : npj Genomic Medicine. 1, 16035.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Reduced Hsp70 and Glutamine in Pediatric Severe Malaria Anemia: Role of Hemozoin in Suppressing Hsp70 and NF-κB activation

    Kempaiah, P., Dokladny, K., Karim, Z., Raballah, E., Ong'echa, J. M., Moseley, Pope Lloyd & Perkins, D. J., 2016, In : Molecular Medicine. 22, p. 570-584 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Replication fork stability confers chemoresistance in BRCA-deficient cells

    Chaudhuri, A. R., Callen, E., Ding, X., Gogola, E., Duarte, A. A., Lee, J., Wong, N., Lafarga, V., Calvo, J. A., Panzarino, N. J., John, S., Day, A., Crespo, A. V., Shen, B., Starnes, L. M., de Ruiter, J. R., Daniel, J. A., Konstantinopoulos, P. A., Cortez, D., Cantor, S. B., Fernandez-Capetillo, O., Ge, K., Jonkers, J., Rottenberg, S., Sharan, S. K. & Nussenzweig, A., 2016, In : Nature. 535, 7612, p. 382-7 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Ring of Change: CDC48/p97 Drives Protein Dynamics at Chromatin

    Franz, A., Ackermann, Leena & Hoppe, T., 2016, In : Frontiers in Genetics. 7, p. 73

    Research output: Contribution to journalReviewResearchpeer-review

  33. Published

    Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota

    Palleja, A., Kashani, A., Allin, Kristine Højgaard, Nielsen, Trine, Zhang, C., Li, Y., Brach, Thorsten, Liang, S., Feng, Q., Jørgensen, N. B., Bojsen-Møller, K. N., Dirksen, C., Burgdorf, K. S., Holst, Jens Juul, Madsbad, Sten, Wang, J., Pedersen, Oluf Borbye, Hansen, Torben & Arumugam, Mani, 2016, In : Genome Medicine. 8, 13 p., 67.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    SDCCAG8 Interacts with RAB Effector Proteins RABEP2 and ERC1 and Is Required for Hedgehog Signaling

    Airik, R., Schueler, M., Airik, M., Cho, J., Ulanowicz, K. A., Porath, J. D., Hurd, T. W., Bekker-Jensen, Simon Holst, Schrøder, J. M., Andersen, J. S. & Hildebrandt, F., 2016, In : P L o S One. 11, 5, 19 p., e0156081.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data

    Szklarczyk, D., Santos Delgado, A., von Mering, C., Jensen, Lars Juhl, Bork, P. & Kuhn, M., 2016, In : Nucleic Acids Research. 44, D1, p. D380-84 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

    Franceschini, A., Lin, J., von Mering, C. & Jensen, Lars Juhl, 2016, In : Bioinformatics. 32, 7, p. 1085-7 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics

    Refsgaard, J. C., Munk, S. & Jensen, Lars Juhl, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer Publishing Company, Vol. 1355. p. 323-39 17 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  38. Published

    Simple and Reproducible Sample Preparation for Single-Shot Phosphoproteomics with High Sensitivity

    Jersie-Christensen, R. R., Sultan, A. & Olsen, Jesper Velgaard, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). p. 251-60 10 p. (Methods in molecular biology (Clifton, N.J.), Vol. 1355).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  39. Published

    Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes

    Diehl, C., Wisniewska, M., Frick, I., Streicher, W., Björck, L., Malmström, J. & Wikström, M., 2016, In : Frontiers in Microbiology. 7, 9 p., 95.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Systems Analysis for Interpretation of Phosphoproteomics Data

    Munk, S., Refsgaard, J. C. & Olsen, Jesper Velgaard, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 341-60 20 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  41. Published

    TEMPORAL ORDER OF DISEASE PAIRS AFFECTS SUBSEQUENT DISEASE TRAJECTORIES: THE CASE OF DIABETES AND SLEEP APNEA

    zmw894, zmw894, Westergaard, David, Jensen, A. B., Groop, L. & Brunak, Søren, 2016, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 22, p. 380-389 10 p.

    Research output: Contribution to journalConference articleResearchpeer-review

  42. Published

    TOPBP1 regulates RAD51 phosphorylation and chromatin loading and determines PARP inhibitor sensitivity

    Moudry, P., Watanabe, K., Wolanin, K. M., Bartkova, J., Wassing, I. E., Watanabe, S., Strauss, R., Pedersen, R. T., Østergaard, Vibe Hallundbæk, Lisby, Michael, Andújar-Sánchez, M., Maya-Mendoza, A., Esashi, F., Lukas, Jiri & Bartek, J., 2016, In : The Journal of Cell Biology. 212, 3, p. 281-288 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Tools and data services registry: a community effort to document bioinformatics resources

    Ison, J., Rapacki, K., Ménager, H., Kalaš, M., Rydza, E., Chmura, P., Anthon, Christian, Beard, N., Berka, K., Bolser, D., Booth, T., Bretaudeau, A., Brezovsky, J., Casadio, R., Cesareni, G., Coppens, F., Cornell, M., Cuccuru, G., Davidsen, K., Vedova, G. D., Dogan, T., Doppelt-Azeroual, O., Emery, L., Gasteiger, E., Gatter, T., Goldberg, T., Grosjean, M., Grüning, B., Helmer-Citterich, M., Ienasescu, H., Ioannidis, V., Jespersen, M. C., Jimenez, R., Juty, N., Juvan, P., Koch, M., Laibe, C., Li, J., Licata, L., Mareuil, F., Mičetić, I., Friborg, R. M., Moretti, S., Morris, C., Möller, S., Nenadic, A., Peterson, H., Profiti, G., Rice, P., Romano, P., Roncaglia, P., Saidi, R., Schafferhans, A., Schwämmle, V., Smith, C., Sperotto, M. M., Stockinger, H., Vařeková, R. S., Tosatto, S. C. E., de la Torre, V., Uva, P., Via, A., Yachdav, G., Zambelli, F., Vriend, G., Rost, B., Parkinson, H., Løngreen, P. & Brunak, Søren, 2016, In : Nucleic Acids Research. 44, D1, p. D38-D47 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Two functionally distinct kinetochore pools of BubR1 ensure accurate chromosome segregation

    Zhang, G., Mendez, B. L., Sedgwick, G. G. & Nilsson, Jakob, 2016, In : Nature Communications. 7, p. 1-12 12 p., 12256.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. 2015
  46. Published

    Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy: a cohort study based on the Danish National Patient Register from 1996 to 2014

    Jensen, A. B., Ajslev, T. A., Brunak, Søren & Sørensen, Thorkild I.A., 15 Dec 2015, In : B M J Open. 5, 8 p., e008702.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    MicroRNA 19a replacement partially rescues fin and cardiac defects in zebrafish model of Holt Oram syndrome

    Chiavacci, E., Daurizio, R., Guzzolino, E., Russo, Francesco, Baumgart, M., Groth, M., Mariani, L., Donofrio, M., Arisi, I., Pellegrini, M., Cellerino, A., Cremisi, F. & Pitto, L., 14 Dec 2015, In : Scientific Reports. 5, 18240.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Interaction of RECQ4 and MCM10 is important for efficient DNA replication origin firing in human cells

    Kliszczak, M., Sedlackova, H., Pitchai, G. P., Streicher, W. W., Krejci, L. & Hickson, Ian David, 1 Dec 2015, In : OncoTarget. 6, 38, p. 40464-79 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Mitochondrial specialization revealed by single muscle fiber proteomics: focus on the Krebs cycle

    Schiaffino, S., Reggiani, C., Kostrominova, T. Y., Mann, Matthias & Murgia, M., Dec 2015, In : Scandinavian Journal of Medicine & Science in Sports. 25, Suppl 4, p. 41-8 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  50. Published

    p38- and MK2-dependent signalling promotes stress-induced centriolar satellite remodelling via 14-3-3-dependent sequestration of CEP131/AZI1

    Tollenaere, M. A. X., Villumsen, B. H., Blasius, M., Nielsen, J. C., Wagner, S. A., Bartek, J., Beli, P., Mailand, Niels & Bekker-Jensen, Simon Holst, 30 Nov 2015, In : Nature Communications. 6, p. 1-12 12 p., 10075.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Crystal Structure of the Homing Endonuclease I-CvuI Provides a New Template for Genome Modification

    Molina, Rafael, Redondo, P., López-Méndez, B., Villate, M., Merino, N., Blanco, F. J., Valton, J., Grizot, S., Duchateau, P., Prieto, J. & Montoya, Guillermo, 27 Nov 2015, In : The Journal of Biological Chemistry. 290, 48, p. 28727-36 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Impact of microRNA-130a on the neutrophil proteome

    Pedersen, C. C., Refsgaard, J. C., Østergaard, Ole, Jensen, Lars Juhl, Heegaard, N. H. H., Borregaard, N. & Cowland, J. B., 25 Nov 2015, In : B M C Immunology. 16, 10 p., 70.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage

    Thorslund, T., Ripplinger, A., Hoffmann, Saskia, Wild, T., Uckelmann, M., Villumsen, B., Narita, Takeo, Sixma, T. K., Choudhary, Chuna Ram, Bekker-Jensen, Simon Holst & Mailand, Niels, 19 Nov 2015, In : Nature. 527, 7578, p. 389-93 5 p.

    Research output: Contribution to journalLetterResearchpeer-review

  54. Published

    Binding of the Multimodal Antidepressant Drug Vortioxetine to the Human Serotonin Transporter

    Andersen, J., Ladefoged, L. K., Wang, Danyang, Kristensen, T. N. B., Bang-Andersen, B., Kristensen, Anders Skov, Schiøtt, B. & Strømgaard, Kristian, 18 Nov 2015, In : A C S Chemical Neuroscience. 6, 11, p. 1892-900 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Protein kinase A stimulates Kv7.1 surface expression by regulating Nedd4-2-dependent endocytic trafficking

    Andersen, M. N., Hefting, L. L., Steffensen, Annette Buur, Schmitt, Nicole, Olesen, Søren-Peter, Olsen, Jesper Velgaard, Lundby, Alicia & Rasmussen, Hanne Borger, 15 Nov 2015, In : American Journal of Physiology: Cell Physiology. 309, 10, p. C693-C706 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

    Deshmukh, Atul Shahaji, Cox, J., Jensen, Lars Juhl, Meissner, F. & Mann, Matthias, 6 Nov 2015, In : Journal of Proteome Research. 14, 11, p. 4885-95 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions

    Weinert, B. T., Moustafa, T., Iesmantavicius, V., Zechner, R. & Choudhary, Chuna Ram, 3 Nov 2015, In : E M B O Journal. 34, 21, p. 2620-2632 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Large-Scale Identification of the Arginine Methylome by Mass Spectrometry

    Sylvestersen, K. B. & Nielsen, Michael Lund, 2 Nov 2015, Current Protocols in Protein Science. Vol. 82. 17 p. (Current Protocols in Protein Science).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  59. Published

    A lncRNA to repair DNA

    Lukas, Jiri & Altmeyer, M., Nov 2015, In : E M B O Reports. 16, 11, p. 1413-4 2 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  60. Published

    Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

    Schölz, C., Lyon, D., Refsgaard, J. C., Jensen, Lars Juhl, Choudhary, Chuna Ram & Weinert, B. T., Nov 2015, In : Nature Methods. 12, p. 1003-4 2 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  61. Published

    Functional and in silico assessment of MAX variants of unknown significance

    Comino-Méndez, I., Leandro-García, L. J., Montoya, Guillermo, Inglada-Pérez, L., de Cubas, A. A., Currás-Freixes, M., Tysoe, C., Izatt, L., Letón, R., Gómez-Graña, Á., Mancikova, V., Apellániz-Ruiz, M., Mannelli, M., Schiavi, F., Favier, J., Gimenez-Roqueplo, A., Timmers, H. J. L. M., Roncador, G., Garcia, J. F., Rodríguez-Antona, C., Robledo, M. & Cascón, A., Nov 2015, In : Journal of Molecular Medicine. 93, 11, p. 1247-55 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Biased Gs Versus Gq Proteins and β-Arrestin Signaling in the NK1 Receptor Determined by Interactions in the Water Hydrogen Bond Network

    Valentin-Hansen, L., Frimurer, Thomas Michael, Mokrosinski, J., Holliday, N. D. & Schwartz, Thue W., 2 Oct 2015, In : The Journal of Biological Chemistry. 290, 40, p. 24495-508 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study

    Winkler, T. W., Justice, A. E., Graff, M., Barata, L., Feitosa, M. F., Chu, S., Czajkowski, J., Esko, T., Fall, T., Oskari Kilpeläinen, Tuomas, Lu, Y., Mägi, R., Mihailov, E., Pers, T. H., Rüeger, S., Teumer, A., Ehret, G. B., Ferreira, T., Heard-Costa, N. L., Karjalainen, J., Lagou, V., Mahajan, A., Neinast, M. D., Prokopenko, I., Simino, J., Teslovich, T. M., Jansen, R., Westra, H., White, C. C., Absher, D., Ahluwalia, T. V. S., Ahmad, S., Albrecht, E., Alves, A. C., Bragg-Gresham, J. L., de Craen, A. J. M., Bis, J. C., Bonnefond, A., Boucher, G., Banasik, Karina, Grarup, Niels, Hansen, Torben, Jørgensen, T., Krarup, N. T., Linneberg, Allan René, Ribel-Madsen, R., Sparsø, T. H., Melbye, Mads, Pedersen, Oluf Borbye, Sørensen, Thorkild I.A. & CHARGE Consortium, C. C., 1 Oct 2015, In : P L o S Genetics. 11, 10, p. 1-42 42 p., e1005378.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death

    Rondas, D., Gudmundsdottir, V., D'Hertog, W., Crèvecoeur, I., Waelkens, E., Brunak, Søren, Mathieu, C. & Overbergh, L., Oct 2015, In : Proteomics - Clinical Applications. 9, 9-10, p. 938–952 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    RNF138 joins the HR team

    Bekker-Jensen, Simon Holst & Mailand, Niels, Oct 2015, In : Nature Cell Biology. 17, 11, p. 1375-7 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Comparative Study of Different Methods for the Prediction of Drug-Polymer Solubility

    Knopp, M. M., Tajber, L., Tian, Y., Olesen, N. E., Jones, D. S., Kozyra, A., Löbmann, Korbinian, Paluch, K., Brennan, C. M., Holm, R., Healy, A. M., Andrews, G. P. & Rades, Thomas, 8 Sep 2015, In : Molecular Pharmaceutics. 12, 9, p. 3408-19 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits

    Acosta-Alvear, D., Cho, M. Y., Wild, T., Buchholz, T. J., Lerner, A. G., Simakova, O., Hahn, J., Korde, N., Landgren, O., Maric, I., Choudhary, Chuna Ram, Walter, P., Weissman, J. S. & Kampmann, M., 1 Sep 2015, In : eLife. 4, p. 1-19 e08153.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells

    Ding, L., Paszkowski-Rogacz, M., Winzi, M., Chakraborty, D., Theis, M., Singh, S., Ciotta, G., Poser, I., Roguev, A., Chu, W. K., Choudhary, Chuna Ram, Mann, Matthias, Stewart, A. F., Krogan, N. & Buchholz, F., 26 Aug 2015, In : Cell Systems. 1, 2, p. 141-151 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose)

    Altmeyer, M., Neelsen, K. J., Teloni, F., Pozdnyakova, I., Pellegrino, S., Grøfte, M., Rask, M. D., Streicher, W., Jungmichel, S., Nielsen, Michael Lund & Lukas, Jiri, 19 Aug 2015, In : Nature Communications. 6, p. 1-12 8088.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Bub1/BubR1: swiss army knives at kinetochores

    Nilsson, Jakob, 11 Aug 2015, In : Cell Cycle. 14, 9, p. 2999-3000 2 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  71. Published

    SUMO and ubiquitin-dependent XPC exchange drives nucleotide excision repair

    Van Cuijk, L., Van Belle, G. J., Turkyilmaz, Y., Poulsen, S. L., Janssens, R. C., Theil, A. F., Sabatella, M., Lans, H., Mailand, Niels, Houtsmuller, A. B., Vermeulen, W. & Marteijn, J. A., 7 Jul 2015, In : Nature Communications. 6, 10 p., 7499.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Structure of dimeric and tetrameric complexes of the BAR domain protein PICK1 determined by small-angle X-Ray scattering

    Karlsen, M. L., Thorsen, Thor Seneca, Johner, N., Ammendrup-Johnsen, I., Erlendsson, Simon, Tian, X., Simonsen, J. B., Hoiberg-Nielsen, R., Christensen, N. M., Khelashvili, G., Streicher, W., Teilum, Kaare, Vestergaard, Bente, Weinstein, H., Gether, Ulrik, Arleth, Lise & Madsen, Kenneth Lindegaard, 7 Jul 2015, In : Structure. 23, 7, p. 1258-1270 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors

    Cifani, P., Kirik, U., Waldemarson, S. & James, P., 2 Jul 2015, In : Journal of Proteome Research. 14, 7, p. 2819-27 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    Analysis of Continuous Glucose Monitoring in Pregnant Women With Diabetes: Distinct Temporal Patterns of Glucose Associated With Large-for-Gestational-Age Infants

    Law, G. R., Ellison, G. T. H., Secher, A. L., Damm, Peter, Mathiesen, Elisabeth, Temple, R., Murphy, H. R. & Scott, E. M., Jul 2015, In : Diabetes Care. 38, 7, p. 1319-25 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Downregulation of 5-HT7 Serotonin Receptors by the Atypical Antipsychotics Clozapine and Olanzapine. Role of Motifs in the C-Terminal Domain and Interaction with GASP-1

    Manfra, O., Van Craenenbroeck, K., Skieterska, K., Frimurer, Thomas Michael, Schwartz, Thue W., Levy, F. O. & Andressen, K. W., Jul 2015, In : A C S Chemical Neuroscience. 6, 7, p. 1206–1218 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Ubiquitin-specific Protease 11 (USP11) Deubiquitinates Hybrid Small Ubiquitin-like Modifier (SUMO)-Ubiquitin Chains to Counteract RING Finger Protein 4 (RNF4)

    Hendriks, I. A., Schimmel, J., Eifler, K., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 19 Jun 2015, In : The Journal of Biological Chemistry. 290, 25, p. 15526-37 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Mps1-Ndc80: one interaction to rule them all

    Nilsson, Jakob, 10 Jun 2015, In : OncoTarget. 6, 19, p. 16822–16823 2 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  78. Published

    Ancient proteins resolve the evolutionary history of Darwin's South American ungulates

    Welker, Frido, Collins, Matthew James, Thomas, J. A., Wadsley, M., Brace, S., Cappellini, Enrico, Turvey, S. T., Reguero, M., Gelfo, J. N., Kramarz, A., Burger, J., Thomas-Oates, J., Ashford, D. A., Ashton, P. D., Rowsell, K., Porter, D. M., Kessler, B., Fischer, R., Baessmann, C., Kaspar, S., Olsen, Jesper Velgaard, Kiley, P., Elliott, J. A., Kelstrup, C. D., Mullin, V., Hofreiter, M., Willerslev, Eske, Hublin, J., Orlando, L., Barnes, I. & MacPhee, R. D. E., 4 Jun 2015, In : Nature. 522, 7554, p. 81–84 4 p.

    Research output: Contribution to journalLetterResearchpeer-review

  79. Published

    Distinct domains in Bub1 localize RZZ and BubR1 to kinetochores to regulate the checkpoint

    Zhang, G., Lischetti, T., Hayward, D. G. & Nilsson, Jakob, 2 Jun 2015, In : Nature Communications. 6, 14 p., 7162.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Investigating the function of Fc -specific binding of IgM to Plasmodium falciparum erythrocyte membrane protein 1 mediating erythrocyte rosetting

    Stevenson, L., Huda, P., Jeppesen, A., Laursen, E. T. F., Rowe, J. A., Craig, A., Streicher, W., Barfod, Lea Klingenberg & Hviid, Lars, Jun 2015, In : Cellular Microbiology. 17, 6, p. 819-31 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining

    Zong, D., Callén, E., Pegoraro, G., Lukas, Claudia, Lukas, Jiri & Nussenzweig, A., 26 May 2015, In : Nucleic Acids Research. 43, 10, p. 4950-61 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    A Multilaboratory Comparison of Calibration Accuracy and the Performance of External References in Analytical Ultracentrifugation

    Zhao, H., Ghirlando, R., Alfonso, C., Arisaka, F., Attali, I., Bain, D. L., Bakhtina, M. M., Becker, D. F., Bedwell, G. J., Bekdemir, A., Besong, T. M. D., Birck, C., Brautigam, C. A., Brennerman, W., Byron, O., Bzowska, A., Chaires, J. B., Chaton, C. T., Cölfen, H., Connaghan, K. D., Crowley, K. A., Curth, U., Daviter, T., Dean, W. L., Díez, A. I., Ebel, C., Eckert, D. M., Eisele, L. E., Eisenstein, E., England, P., Escalante, C., Fagan, J. A., Fairman, R., Finn, R. M., Fischle, W., de la Torre, J. G., Gor, J., Gustafsson, H., Hall, D., Harding, S. E., Cifre, J. G. H., Herr, A. B., Howell, E. E., Isaac, R. S., Jao, S., Jose, D., Kim, S., Kokona, B., Kornblatt, J. A., Kosek, D., Krayukhina, E., Krzizike, D., Kusznir, E. A., Kwon, H., Larson, A., Laue, T. M., Le Roy, A., Leech, A. P., Lilie, H., Luger, K., Luque-Ortega, J. R., Ma, J., May, C. A., Maynard, E. L., Modrak-Wojcik, A., Mok, Y., Mücke, N., Nagel-Steger, L., Narlikar, G. J., Noda, M., Nourse, A., Obsil, T., Park, C. K., Park, J., Pawelek, P. D., Perdue, E. E., Perkins, S. J., Perugini, M. A., Peterson, C. L., Peverelli, M. G., Piszczek, G., Prag, G., Prevelige, P. E., Raynal, B. D. E., Rezabkova, L., Richter, K., Ringel, A. E., Rosenberg, R., Rowe, A. J., Rufer, A. C., Scott, D. J., Seravalli, J. G., Solovyova, A. S., Song, R., Staunton, D., Stoddard, C., Stott, K., Strauss, H. M., Streicher, W. W., Sumida, J. P., Swygert, S. G., Szczepanowski, R. H., Tessmer, I., Toth, R. T., Tripathy, A., Uchiyama, S., Uebel, S. F. W., Unzai, S., Gruber, A. V., von Hippel, P. H., Wandrey, C., Wang, S., Weitzel, S. E., Wielgus-Kutrowska, B., Wolberger, C., Wolff, M., Wright, E., Wu, Y., Wubben, J. M. & Schuck, P., 21 May 2015, In : PLOS ONE. 10, 5, 30 p., e0126420.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines

    Warrer, P., Jensen, P. B., Aagaard, L., Jensen, Lars Juhl, Brunak, S., Krag, M. H., Rossing, P., Almdal, T., Andersen, H. U. & Hansen, E. H., 20 May 2015, In : Journal of Research in Pharmacy Practice. 4, 2, p. 64-72 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling

    Kristensen, J. H., Karsdal, M. A., Sand, J. M. B., Willumsen, N., Diefenbach, C., Svensson, B., Hägglund, Per Mårten & Oersnes-Leeming, D. J., 3 May 2015, In : BMC Pulmonary Medicine. 15, 1, 53.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase

    Navrot, N., Skjoldager, N., Bunkenborg, J., Svensson, B. & Hägglund, Per Mårten, 1 May 2015, In : Plant Physiology and Biochemistry. 90, p. 58-63 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines Relevant for Genome Stability

    Xiao, Z., Chang, J., Hendriks, I. A., Sigurdsson, J. O., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 1 May 2015, In : Molecular and Cellular Proteomics. 14, 5, p. 1419-1434

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Ubiquitin-like protein UBL5 promotes the functional integrity of the Fanconi anemia pathway

    Oka, Y., Bekker-Jensen, Simon Holst & Mailand, Niels, 9 Apr 2015, In : E M B O Journal. 34, p. 1385-1398

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    A new method for discovering disease-specific MiRNA-target regulatory networks

    Baglioni, M., Russo, Francesco, Geraci, F., Rizzo, M., Rainaldi, G. & Pellegrini, M., 7 Apr 2015, In : PLoS ONE. 10, 4, e0122473.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways and transcription factors

    Deshmukh, Atul Shahaji, Murgia, M., Nagaraja, N., Treebak, Jonas Thue, Cox, J. & Mann, Matthias, Apr 2015, In : Molecular and Cellular Proteomics. 14, 4, p. 841-853

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Individualization of treatments with drugs metabolized by CES1: combining genetics and metabolomics

    Rasmussen, H. B., Bjerre, D., Linnet, Kristian, Jürgens, G., Dalhoff, Kim, Stefansson, H., Hankemeier, T., Kaddurah-Daouk, R., Taboureau, O., Brunak, Søren, Houmann, T., Jeppesen, Pia, Pagsberg, Anne Katrine, Plessen, K., Dyrborg, J., Hansen, Peter Riis, Hansen, P. E., Hughes, T., Werge, Thomas & INDICES Consortium, I. C., Apr 2015, In : Pharmacogenomics. 16, 6, p. 649-65

    Research output: Contribution to journalReviewResearchpeer-review

  91. Published

    Lamin A/C-dependent interaction with 53BP1 promotes cellular responses to DNA damage

    Gibbs-Seymour, I., Markiewicz, E., Bekker-Jensen, Simon Holst, Mailand, Niels & Hutchison, C. J., Apr 2015, In : Aging Cell. 14, 2, p. 162-9 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Production of functional human insulin-like growth factor binding proteins (IGFBPs) using recombinant expression in HEK293 cells

    Wanscher, A. S. M., Williamson, M., Ebersole, T. W., Streicher, W., Wikström, M. & Cazzamali, G., Apr 2015, In : Protein Expression and Purification. 108, p. 97-105 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    A RIPK2 inhibitor delays NOD signalling events yet prevents inflammatory cytokine production

    Nachbur, U., Stafford, C. A., Bankovacki, A., Zhan, Y., Lindqvist, L. M., Fiil, B. K., Khakham, Y., Ko, H., Sandow, J. J., Falk, H., Holien, J. K., Chau, D., Hildebrand, J., Vince, J. E., Sharp, P. P., Webb, A. I., Jackman, K. A., Mühlen, S., Kennedy, C. L., Lowes, K. N., Murphy, J. M., Gyrd-Hansen, M., Parker, M. W., Hartland, E. L., Lew, A. M., Huang, D. C. S., Lessene, G. & Silke, J., 17 Mar 2015, In : Nature Communications. 6, 13 p., 6442.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage

    Hendriks, I. A., Treffers, L. W., Verlaan-de Vries, M., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 17 Mar 2015, In : Cell Reports. 10, 10, p. 1778–1791

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Structure of p15PAF-PCNA complex and implications for clamp sliding during DNA replication and repair

    De Biasio, A., de Opakua, A. I., Mortuza, G. B., Molina, Rafael, Cordeiro, T. N., Castillo, F., Villate, M., Merino, N., Delgado, S., Gil-Cartón, D., Luque, I., Diercks, T., Bernadó, P., Montoya, Guillermo & Blanco, F. J., 12 Mar 2015, In : Nature Communications. 6, p. 1-12 6439.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    FBH1 Catalyzes Regression of Stalled Replication Forks

    Fugger, K., Mistrik, M., Neelsen, K. J., Yao, Q., Zellweger, R., Kousholt, A. N., Haahr, Peter Thorlund, Chu, W. K., Bartek, J., Lopes, M., Hickson, Ian David & Sørensen, Claus Storgaard, 10 Mar 2015, In : Cell Reports.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Single muscle fiber proteomics reveals unexpected mitochondrial specialization

    Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In : E M B O Reports. 16, 3, p. 387-95 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Two Lactococcus lactis thioredoxin paralogues play different roles in responses to arsenate and oxidative stress

    Efler, P., Kilstrup, M., Johnsen, S., Svensson, B. & Hägglund, Per Mårten, 1 Mar 2015, In : Microbiology (United Kingdom). 161, 3, p. 528-538 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Can sequestering of mitotic spindle proteins cause aneuploidy? (Comment on DOI 10.1002/bies.201400175)

    Nilsson, Jakob, Mar 2015, In : BioEssays. 37, 3, p. 234 1 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  100. Published

    DISEASES: Text mining and data integration of disease-gene associations

    Pletscher-Frankild, S., Pallejà, A., Tsafou, K., Binder, J. X. & Jensen, Lars Juhl, Mar 2015, In : Methods. 74, p. 83-9 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

    Bassani-Sternberg, M., Pletscher-Frankild, S., Jensen, Lars Juhl & Mann, Matthias, Mar 2015, In : Molecular and Cellular Proteomics. 14, 3, p. 658-73 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  102. Published

    Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering

    Alonso-Gutierrez, J., Kim, E., Batth, Tanveer Singh, Cho, N., Hu, Q., Chan, L. J. G., Petzold, C. J., Hillson, N. J., Adams, P. D., Keasling, J. D., Garcia Martin, H. & Lee, T. S., Mar 2015, In : Metabolic Engineering. 28, p. 123-133 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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