The NNF Center for Protein Research

  1. Published

    The association between anxiety and measures of glycaemia in a population-based diabetes screening programme

    Aujla, N., Davies, Michael Jonathan, Skinner, Timothy, Gray, L. J., Webb, D. R., Srinivasan, Balaji & Khunti, K., 1 Jul 2011, In : Diabetic Medicine. 28, 7, p. 785-788 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics

    Bache, N., Geyer, P. E., Bekker-Jensen, D. B., Hørning, O., Falkenby, L., Treit, P. V., Doll, S., Paron, I., Müller, J. B., Meier, F., Olsen, Jesper Velgaard, Vorm, O. & Mann, Matthias, 2018, In : Molecular and Cellular Proteomics. 17, 11, p. 2284-2296 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Sensitive quantitation of endotoxin by enzyme-linked immunosorbent assay with monoclonal antibody against Limulus peptide C

    Baek, L., Buchardt, O. & Nielsen, Peter E., Feb 1994, In : Journal of Clinical Microbiology. 32, 2, p. 416-22 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    A new method for discovering disease-specific MiRNA-target regulatory networks

    Baglioni, M., Russo, Francesco, Geraci, F., Rizzo, M., Rainaldi, G. & Pellegrini, M., 7 Apr 2015, In : PLoS ONE. 10, 4, e0122473.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Spatio-temporal profiling and degradation of alpha-amylase isozymes during barley seed germination

    Bak-Jensen, K. S., Laugesen, S., Østergaard, Ole, Finnie, C., Roepstorff, P. & Svensson, B., May 2007, In : F E B S Journal. 274, 10, p. 2552-65 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Bioinformatics-driven identification and examination of candidate genes for non-alcoholic fatty liver disease

    Banasik, Karina, Justesen, Johanne Marie, Hornbak, M., Krarup, N. T., Gjesing, Anette Marianne Prior, Sandholt, C. H., Søndergaard Jensen, T., Grarup, Niels, Andersson, Å., Jørgensen, T., Witte, D. R., Sandbæk, A., Lauritzen, T., Thorens, B., Brunak, Søren, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye & Hansen, Torben, 1 Jan 2011, In : P L o S One. 6, 1, p. e16542

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Gibberellic acid-induced aleurone layers responding to heat shock or tunicamycin provide insight into the N-glycoproteome, protein secretion, and endoplasmic reticulum stress

    Barba-Espín, G., Dedvisitsakul, P., Hägglund, Per Mårten, Svensson, B. & Finnie, C., 1 Feb 2014, In : Plant Physiology. 164, 2, p. 951-965 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    A chromatin-based signalling mechanism directs the switch from mutagenic to error-free repair of DNA double strand breaks

    Bartke, T. & Groth, Anja, 2019, In : Molecular & Cellular Oncology. 6, 4, 3 p., 1605820.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

    Bassani-Sternberg, M., Pletscher-Frankild, S., Jensen, Lars Juhl & Mann, Matthias, Mar 2015, In : Molecular and Cellular Proteomics. 14, 3, p. 658-73 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Consistent Prediction of Mutation Effect on Drug Binding in HIV-1 Protease Using Alchemical Calculations

    Bastys, T., Gapsys, V., Doncheva, Nadezhda Tsankova, Kaiser, R., De Groot, B. L. & Kalinina, O. V., 10 Jul 2018, In : Journal of Chemical Theory and Computation. 14, 7, p. 3397-3408

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics

    Batth, Tanveer Singh, Francavilla, C. & Olsen, Jesper Velgaard, 4 Nov 2014, In : Journal of Proteome Research. 13, 12, p. 6176-86 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins

    Batth, Tanveer Singh, Singh, P., Ramakrishnan, V. R., Sousa, M. M. L., Chan, L. J. G., Tran, H. M., Luning, E. G., Pan, E. H. Y., Vuu, K. M., Keasling, J. D., Adams, P. D. & Petzold, C. J., Nov 2014, In : Metabolic Engineering. 26, p. 48-56 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage

    Batth, Tanveer Singh & Olsen, Jesper Velgaard, 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 179-92 14 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  14. Published

    Large-Scale Phosphoproteomics Reveals Shp-2 Phosphatase-Dependent Regulators of Pdgf Receptor Signaling

    Batth, Tanveer Singh, Papetti, M., Pfeiffer, Anamarija, Tollenaere, M. A. X., Francavilla, C. & Olsen, Jesper Velgaard, 2018, In : Cell Reports. 22, 10, p. 2784-2796 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation

    Batth, Tanveer Singh, Tollenaere, M. A. X., Rüther, Patrick, Gonzalez-Franquesa, Alba, Prabhakar, B. S., Bekker-Jensen, Simon Holst, Deshmukh, Atul Shahaji & Olsen, Jesper Velgaard, 2019, In : Molecular and Cellular Proteomics. 18, 5, p. 1027-1035

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Half-Life Extending Modifications of Peptide YY3-36 Direct Receptor-Mediated Internalization

    Bech, E. M., Kaiser, A., Bellmann-Sickert, K., Bohr, Søren Schmidt-Rasmussen, Sørensen, K. K., Elster, L., Hatzakis, Nikos, Pedersen, S. L., Beck-Sickinger, A. G. & Jensen, Knud Jørgen, 2019, In : Molecular Pharmaceutics. 16, 8, p. 3665-3677

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Acetyltransferases Gcn5 and PCAF regulate B cell development

    Beck, C., Daniel, J. & Oksenych, V., 2019, In : Scandinavian Journal of Immunology. 90, 6

    Research output: Contribution to journalConference abstract in journalResearch

  18. Published

    Diagnosis trajectories of prior multi-morbidity predict sepsis mortality

    zmw894, zmw894, Jensen, A. B., Nielsen, Annelaura Bach, Perner, Anders, Moseley, Pope Lloyd & Brunak, Søren, 4 Nov 2016, In : Scientific Reports. 6, 9 p., 36624.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    TEMPORAL ORDER OF DISEASE PAIRS AFFECTS SUBSEQUENT DISEASE TRAJECTORIES: THE CASE OF DIABETES AND SLEEP APNEA

    zmw894, zmw894, Westergaard, David, Jensen, A. B., Groop, L. & Brunak, Søren, 2016, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 22, p. 380-389 10 p.

    Research output: Contribution to journalConference articleResearchpeer-review

  20. Published

    Knowledge engineering for health: a new discipline required to bridge the "ICT gap" between research and healthcare

    Beck, T., Gollapudi, S., Brunak, Søren, Graf, N., Lemke, H. U., Dash, D., Buchan, I., Díaz, C., Sanz, F. & Brookes, A. J., May 2012, In : Human Mutation. 33, 5, p. 797-802 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Combined GLP-1, Oxyntomodulin, and Peptide YY Improves Body Weight and Glycemia in Obesity and Prediabetes/Type 2 Diabetes: A Randomized Single-Blinded Placebo Controlled Study

    Behary, P., Tharakan, G., Alexiadou, K., Johnson, N., Albrechtsen, Nicolai Jacob Wewer, Kenkre, J., Cuenco, J., Hope, D., Anyiam, O., Choudhury, S., Alessimii, H., Poddar, A., Minnion, J., Doyle, C., Frost, G., Le Roux, C., Purkayastha, S., Moorthy, K., Dhillo, W., Holst, Jens Juul, Ahmed, A. R., Prevost, A. T., Bloom, S. R. & Tan, T. M., 2019, In : Diabetes Care. 42, 7, 8 p., dc190449.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    A urokinase receptor-associated protein with specific collagen binding properties

    Behrendt, Niels, Jensen, O. N., Engelholm, Lars Henning, Mørtz, E., Mann, Matthias & Danø, K., 21 Jan 2000, In : The Journal of Biological Chemistry. 275, 3, p. 1993-2002 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Identification of a novel membrane protein that interacts specifically with the upar-prourokinase complex

    Behrendt, Niels, Engelholm, Lars Henning, Jensen, O. N., Mörtz, E., Ranne, E., Mann, Matthias & Dan, K., 1 Dec 1997, In : Fibrinolysis and Proteolysis. 11, SUPPL. 3, 1 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

    Bekker-Jensen, D. B., Kelstrup, C. D., Batth, Tanveer Singh, Buch-Larsen, Sara Charlotte, Haldrup, C., Bramsen, J. B., Sørensen, K. D., Høyer, S., Ørntoft, T. F., Andersen, C. L., Nielsen, Michael Lund & Olsen, Jesper Velgaard, 2017, In : Cell Systems. 4, 6, p. 587-599, e1-e4 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

    Bekker-Jensen, D. B., Martínez-Val, A., Steigerwald, S., Rüther, Patrick, Fort, K. L., Arrey, T. N., Harder, A., Makarov, A. & Olsen, Jesper Velgaard, Apr 2020, In : Molecular and Cellular Proteomics. 19, 4, p. 716-729 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries

    Bekker-Jensen, D. B., Bernhardt, O. M., Hogrebe, A., Martinez-Val, A., Verbeke, L., Gandhi, T., Kelstrup, C. D., Reiter, L. & Olsen, Jesper Velgaard, 2020, In : Nature Communications. 11, 1

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    RNF138 joins the HR team

    Bekker-Jensen, Simon Holst & Mailand, Niels, Oct 2015, In : Nature Cell Biology. 17, 11, p. 1375-7 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Ubiquitin and the DNA damage response: a new handle on histones

    Bekker-Jensen, Simon Holst & Mailand, Niels, 1 Sep 2012, In : Cell Cycle. 11, 17, p. 3153 1 p.

    Research output: Contribution to journalComment/debateResearchpeer-review

  29. Published

    ICLs: a chicken without an egg

    Bekker-Jensen, Simon Holst & Mailand, Niels, 2012, In : Nature Reviews. Molecular Cell Biology. 13, 6, p. 342

    Research output: Contribution to journalReviewResearchpeer-review

  30. Published

    The ubiquitin- and SUMO-dependent signaling response to DNA double-strand breaks

    Bekker-Jensen, Simon Holst & Mailand, Niels, 12 Jun 2011, In : FEBS letters. 585, p. 2914-2919 6 p.

    Research output: Contribution to journalReviewResearchpeer-review

  31. Published

    Assembly and function of DNA double-strand break repair foci in mammalian cells

    Bekker-Jensen, Simon Holst & Mailand, Niels, 10 Dec 2010, In : D N A Repair. 9, 12, p. 1219-28 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

    Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, Jesper Velgaard, Baskcomb, L., Mann, Matthias, Jackson, S. P. & Choudhary, Chuna Ram, 2012, In : Molecular Cell. 46, 2, p. 212-25 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Klinefelter syndrome comorbidities linked to increased X chromosome gene dosage and altered protein interactome activity

    Belling, Kirstine G, Russo, Francesco, Jensen, A. B., Dalgaard, M. D., Westergaard, David, Rajpert-De Meyts, E., Skakkebæk, Niels Erik, Juul, Anders & Brunak, Søren, 1 Apr 2017, In : Human Molecular Genetics. 26, 7, p. 1219-1229 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Transcriptome profiling of mice testes following low dose irradiation

    Belling, Kirstine G, Nielsen, H. B., Brunak, Søren, Tanaka, M., Dalgaard, M. D., Nielsen, J. E., Almstrup, K. & Leffers, H., 28 May 2013, In : Reproductive Biology and Endocrinology. 11, 1, 13 p., 50.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls

    Belstrøm, Daniel, Jersie-Christensen, R. R., Lyon, D., Damgaard, Christian, Jensen, Lars Juhl, Holmstrup, Palle & Olsen, Jesper Velgaard, 2016, In : PeerJ. 4, 17 p., e2433.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Molecular characterization of oxysterol binding to the Epstein-Barr virus-induced gene 2 (GPR183)

    Benned-Jensen, T., Norn, Christoffer, Laurent, S., Madsen, C. M., Larsen, H. M., Arfelt, K. N., Wolf, R. M., Frimurer, Thomas Michael, Sailer, A. W. & Rosenkilde, Mette, 12 Oct 2012, In : The Journal of Biological Chemistry. 287, 42, p. 35470-83 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Incentive and entrenchment effects in European ownership

    Bennedsen, Morten & Nielsen, K. M., Sep 2010, In : Journal of Banking & Finance. 34, 9, p. 2212-2229

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Acetylation dynamics of human nuclear proteins during the ionizing radiation-induced DNA damage response

    Bennetzen, M., Andersen, J. S., Lasen, D. H., Dinant, C., Watanabe, S., Bartek, J. & Lukas, Jiri, 1 Jun 2013, In : Cell Cycle. 12, 11, p. 1688-1695 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

    Bennetzen, M. V., Kosar, M., Bunkenborg, J., Payne, M. R., Bartkova, J., Lindström, M. S., Lukas, Jiri, Andersen, J. S., Bartek, J. & Larsen, D. H., 2018, In : Cell Cycle. 17, 17, p. 2146-2163

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    RNA-DNA sequence differences spell genetic code ambiguities

    Bentin, Thomas & Nielsen, Michael Lund, 2013, In : Artificial DNA. 2, 3, p. 69-70 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and beta-cell apoptosis

    Berchtold, L. A., Størling, Z. M., Ortis, F., Lage, K., Bang-Berthelsen, C., Bergholdt, R., Hald, J., Brorsson, C. A., Eizirik, D. L., Pociot, Flemming, Brunak, Søren & Størling, Joachim, 2011, In : PNAS Early Edition. 108, 37, p. E681-8

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Identification of novel type 1 diabetes candidate genes by integrating genome-wide association data, protein-protein interactions, and human pancreatic islet gene expression

    Bergholdt, R., Brorsson, C., Palleja, A., Berchtold, L. A., Fløyel, T., Bang-Berthelsen, C. H., Frederiksen, K. S., Jensen, Lars Juhl, Størling, J. & Pociot, F., 2012, In : Diabetes. 61, 4, p. 954-62 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Tail Structure and Dynamics

    Bhatt, Shweta, Leiman, P. G. & Taylor, Nicholas M I, 2019, Reference Module in Life Sciences. Elsevier

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearch

  44. Published

    The RIF1-PP1 Axis Controls Abscission Timing in Human Cells

    Bhowmick, Rahul, Thakur, Roshan Singh, Venegas, A. B., Liu, Ying, Nilsson, Jakob, Barisic, Marin & Hickson, Ian David, 2019, In : Current Biology. 29, 7, p. 1232-1242.e5

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    PICH: A DNA Translocase Specially Adapted for Processing Anaphase Bridge DNA

    Biebricher, A., Hirano, S., Enzlin, J., Wiechens, N., Streicher, W., Huttner, D., Wang, L., Nigg, E., Owen-Hughes, T., Liu, Ying, Peterman, E., Wuite, G. & Hickson, Ian David, 12 Sep 2013, In : Molecular Cell. 51, 5, p. 691-701 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Use of Computational Biochemistry for Elucidating Molecular Mechanisms of Nitric Oxide Synthase

    Bignon, E., Rizza, S., Filomeni, G. & Papaleo, Elena, 2019, In : Computational and Structural Biotechnology Journal. 17, p. 415-429 15 p.

    Research output: Contribution to journalReviewResearchpeer-review

  47. Published

    Regulation of the cancer-related Src kinase by S-nitrosylation

    Bignon, E. & Papaleo, Elena, 2019, In : Free Radical Biology and Medicine. 139, p. S13-S14

    Research output: Contribution to journalConference abstract in journalResearch

  48. Published

    Computational Structural Biology of S-nitrosylation of Cancer Targets

    Bignon, E., Allega, M. F., Lucchetta, M., Tiberti, M. & Papaleo, Elena, 2018, In : Frontiers in Oncology. 8, p. 1-23 272.

    Research output: Contribution to journalReviewResearchpeer-review

  49. Published

    COMPARTMENTS: unification and visualization of protein subcellular localization evidence

    Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R. & Jensen, Lars Juhl, 2014, In : Database. 2014, 9 p., bau012.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Lactococcus lactis Thioredoxin Reductase is Sensitive to Light Inactivation

    Björnberg, O., Viennet, T., Skjoldager, N., Ćurović, A., Nielsen, K. F., Svensson, B. & Hägglund, Per Mårten, 3 Mar 2015, In : Biochemistry. 54, 8, p. 1628-1637 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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