The NNF Center for Protein Research

  1. Published

    Best practices in bioinformatics training for life scientists

    Via, A., Blicher, T., Bongcam-Rudloff, E., Brazas, M. D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., Fernandes, P. L., van Gelder, C., Jacob, J., Jimenez, R. C., Loveland, J., Moran, F., Mulder, N., Nyrönen, T., Rother, K., Schneider, M. V. & Attwood, T. K., Sep 2013, In : Briefings in Bioinformatics. 14, 5, p. 528-37 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    The SOCS2 Ubiquitin Ligase Complex Regulates Growth Hormone Receptor Levels

    Vesterlund, M., Zadjali, F., Persson, T., Nielsen, Michael Lund, Kessler, B. M., Norstedt, G. & Flores Morales, A., 1 Jan 2011, In : P L o S One. 6, 9, p. e25358 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Predictive mutagenesis of ligation-independent cloning (LIC) vectors for protein expression and site-specific chemical conjugation

    Vernet, E., Sauer, J., Andersen, P. A., Jensen, Knud Jørgen & Voldborg, B. G. R., 2011, In : Analytical Biochemistry. 414, 2, p. 312-314 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Large-scale biophysical evaluation of protein PEGylation effects: in vitro properties of 61 protein entities

    Vernet, E., Popa, G., Pozdnyakova, I., Rasmussen, J. E., Grohganz, Holger, Giehm, L., Jensen, M. H., Wang, H., Plesner, B., Nielsen, Hanne Mørck, Jensen, Knud Jørgen, Berthelsen, J., Sundström, M. & van de Weert, Marco, 2016, In : Molecular Pharmaceutics. 13, 5, p. 1587-1598 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Screening of genetic parameters for soluble protein expression in Escherichia coli

    Vernet, E., Kotzsch, A., Voldborg, B. & Sundström, M., 2011, In : Protein Expression and Purification. 77, 1, p. 104-11 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

    Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K. K., Olsen, Jesper Velgaard, Hyman, A. A., Stunnenberg, H. G. & Mann, M., 17 Sep 2010, In : Cell. 142, 6, p. 967-80 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases

    Vazquez, M., Pons, T., Brunak, Søren, Valencia, A. & Izarzugaza, J. M. G., Jan 2016, In : Human Mutation. 37, 1, p. 36-42 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

    Vasilopoulou, C. G., Sulek, Karolina, Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 16 Jan 2020, In : Nature Communications. 11, 1, p. 331

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Lipidomic profiles, lipid trajectories and clinical biomarkers in female elite endurance athletes

    V Varga, Tibor, Ali, A., Romero Herrera, Jose Alejandro, Ahonen, L. L., Mattila, I. M., Al-Sari, N. H., Legido-Quigley, C., Skouby, Sven O., Brunak, Søren & Tornberg, Å. B., 2020, In : Scientific Reports. 10, 9 p., 2349.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Preface: Microvesicles in human diseases and their role in intercellular communication and signaling

    Vannini, F. & Russo, Francesco, 1 Jan 2015, In : Forum on Immunopathological Diseases and Therapeutics. 6, 3-4, p. v

    Research output: Contribution to journalEditorialResearchpeer-review

  11. Published

    Extracellular vesicle-mediated transfer of micrornas in atherosclerosis

    Vannini, F. & Russo, Francesco, 1 Jan 2015, In : Forum on Immunopathological Diseases and Therapeutics. 6, 3-4, p. 157-161 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    The protein kinase SIK downregulates the polarity protein Par3

    Vanlandewijck, M., Dadras, M. S., Lomnytska, M., Mahzabin, T., Miller, M. L., Busch, C., Brunak, Søren, Heldin, C. & Moustakas, A., 2018, In : OncoTarget. 9, 5, p. 5716-5735 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    SUMO and ubiquitin-dependent XPC exchange drives nucleotide excision repair

    Van Cuijk, L., Van Belle, G. J., Turkyilmaz, Y., Poulsen, S. L., Janssens, R. C., Theil, A. F., Sabatella, M., Lans, H., Mailand, Niels, Houtsmuller, A. B., Vermeulen, W. & Marteijn, J. A., 7 Jul 2015, In : Nature Communications. 6, 10 p., 7499.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    5'-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases

    Valton, J., Daboussi, F., Leduc, S., Molina, Rafael, Redondo, P., Macmaster, R., Montoya, Guillermo & Duchateau, P., 31 Aug 2012, In : The Journal of Biological Chemistry. 287, 36, p. 30139-50 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    PheVI:09 (Phe6.44) as a sliding microswitch in seven-transmembrane (7TM) G protein-coupled receptor activation

    Valentin-Hansen, L., Holst, Birgitte, Frimurer, Thomas Michael, Schwartz, Thue W. & Hansen, L. V., 21 Dec 2012, In : Journal of Biological Chemistry. 287, 52, p. 43516-43526 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Biased Gs Versus Gq Proteins and β-Arrestin Signaling in the NK1 Receptor Determined by Interactions in the Water Hydrogen Bond Network

    Valentin-Hansen, L., Frimurer, Thomas Michael, Mokrosinski, J., Holliday, N. D. & Schwartz, Thue W., 2 Oct 2015, In : The Journal of Biological Chemistry. 290, 40, p. 24495-508 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Neurodevelopmental deficits in human isogenic fragile x syndrome neurons

    Utami, K., Skotte, N. H., Colaco, A. R. -., Yusof, N. A. B. M., Sim, B., Yeo, X. Y., Bae, H., Garcia-Miralles, M., Radulescu, C., Jung, S., Mann, Matthias & Pouladi, M., 2019, In : Journal of Neurochemistry. 150, p. 103 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  18. Published

    A pilot project to generate affinity reagents to human proteins

    Uhlen, M., Gräslund, S. & Sundström, M., 1 Jan 2008, In : Nature Methods. 5, 10, p. 854-855 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    A Consensus Binding Motif for the PP4 Protein Phosphatase

    Ueki, Yumi, Kruse, Thomas, Weisser, Melanie, Sundell, G. N., Larsen, M. S. Y., Mendez, B. L., Jenkins, N. P., Garvanska, Dimitriya Hristoforova, Cressey, L., Zhang, G., Davey, N., Montoya, Guillermo, Ivarsson, Y., Kettenbach, A. N. & Nilsson, Jakob, 2019, In : Molecular Cell. 76, 6, p. 953-964.e6

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    An unorthodox partnership in DNA repair pathway choice

    Typas, Dimitris & Mailand, Niels, 2019, In : EMBO Reports. 20, 11, e49105.

    Research output: Contribution to journalEditorialResearchpeer-review

  21. Published

    Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

    Tyanova, S., Frishman, D., Cox, J., Mann, Matthias & Olsen, Jesper Velgaard, 10 Jan 2013, In : P L o S Computational Biology (Online). 9, 1, p. e1002842 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

    Turcot, V., Lu, Y., Highland, H. M., Schurmann, C., Justice, A. E., Fine, R. S., Bradfield, J. P., Esko, T., Giri, A., Graff, M., Guo, X., Hendricks, A. E., Karaderi, T., Lempradl, A., Locke, A. E., Mahajan, A., Marouli, E., Sivapalaratnam, S., Young, K. L., Alfred, T., Feitosa, M. F., Masca, N. G. D., Manning, A. K., Winkler, T. W., Bang, L. E., Benn, Marianne, Bork-Jensen, J., Frikke-Schmidt, Ruth, Grarup, Niels, Hansen, Torben, Have, C. T., Jensen, G. B., Jørgensen, M. E., Jørgensen, T., Kamstrup, P. R., Karpe, F., Kovacs, P., Li, J., Lind, L., Linneberg, Allan René, Nielsen, S. F., Nordestgaard, Børge, Pedersen, Oluf Borbye, Pers, Tune H, Tybjærg-Hansen, Anne, V Varga, Tibor, drb459, drb459, Witte, D. R., Zhao, J. H., Loos, R. J. F. & CHD Exome+ Consortium, C. E. C., Jul 2019, In : Nature Genetics. 51, 7, p. 1191-1192 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Methods for the identification of PTEN-targeting microRNAs

    Tuccoli, A., Vitiello, M., Marranci, A., Russo, Francesco & Poliseno, L., 1 Jan 2016, Methods in Molecular Biology. Humana Press, p. 111-138 28 p. (Methods in Molecular Biology, Vol. 1388).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  24. Published

    Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog

    Tsutaya, T., Mackie, Meaghan, Koenig, C., Sato, T., Weber, A. W., Kato, H., Olsen, Jesper Velgaard & Cappellini, Enrico, 2019, In : Scientific Reports. 9, 7 p., 12841.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Identifying the druggable interactome of EWS-FLI1 reveals MCL-1 dependent differential sensitivities of Ewing sarcoma cells to apoptosis inducers

    Tsafou, K., Katschnig, A. M., Radic-Sarikas, B., Mutz, C. N., Iljin, K., Schwentner, R., Kauer, M. O., Mühlbacher, K., Aryee, D. N. T., Westergaard, David, Haapa-Paananen, S., Fey, V., Superti-Furga, G., Toretsky, J., Brunak, Søren & Kovar, H., 2018, In : OncoTarget. 9, 57, p. 31018-31031 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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