The NNF Center for Protein Research

  1. Published

    Genomic Characterization of Cyanophage vB_AphaS-CL131Infecting Filamentous Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Reveals Novel Insights into Virus-Bacterium Interactions

    Šulčius, S., Šimoliūnas, E., Alzbutas, G., Gasiūnas, G., Jauniškis, V., Kuznecova, J., Miettinen, S., Nilsson, E., Meškys, R., Roine, E., Paškauskas, R. & Holmfeldt, K., 2019, In : Applied and Environmental Microbiology. 85, 1, 19 p., e01311-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells

    Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In : D N A Repair. 11, 11, p. 892–905 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation

    Østergaard, Ole, Follmann, F., Olsen, A. W., Heegaard, N. H., Andersen, P. & Rosenkrands, I., Dec 2016, In : Molecular and Cellular Proteomics. 15, 12, p. 3540-3550 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Recent findings and technological advances in phosphoproteomics for cells and tissues

    von Stechow, L., Francavilla, C. & Olsen, Jesper Velgaard, 2015, In : Expert Review of Proteomics. 12, 5, p. 469-87 19 p.

    Research output: Contribution to journalReviewResearchpeer-review

  5. Published

    Proteomics insights into DNA damage response and translating this knowledge to clinical strategies

    von Stechow, L. & Olsen, Jesper Velgaard, Feb 2017, In : Proteomics. 17, 3-4, 15 p., 1600018.

    Research output: Contribution to journalReviewResearchpeer-review

  6. Published

    European guidelines for quality assurance in colorectal cancer screening and diagnosis: overview and introduction to the full supplement publication

    von Karsa, L., Patnick, J., Segnan, N., Atkin, W., Halloran, S., Lansdorp-Vogelaar, I., Malila, N., Minozzi, S., Moss, S., Quirke, P., Steele, R. J., Vieth, M., Aabakken, L., Altenhofen, L., Ancelle-Park, R., Antoljak, N., Anttila, A., Armaroli, P., Arrossi, S., Austoker, J., Banzi, R., Bellisario, C., Blom, J., Brenner, H., Bretthauer, M., Camargo Cancela, M., Costamagna, G., Cuzick, J., Dai, M., Daniel, J., Dekker, E., Delicata, N., Ducarroz, S., Erfkamp, H., Espinàs, J. A., Faivre, J., Faulds Wood, L., Flugelman, A., Frkovic-Grazio, S., Geller, B., Giordano, L., Grazzini, G., Green, J., Hamashima, C., Herrmann, C., Hewitson, P., Hoff, G., Holten, I., Jover, R., Lynge, Elsebeth & European Colorectal Cancer Screening Guidelines Working Group, E. C. C. S. G. W. G., 1 Jan 2013, In : Gastroenterological Endoscopy. 45, 1, p. 51-9 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    52 Genetic Loci Influencing Myocardial Mass

    van der Harst, P., van Setten, J., Verweij, N., Vogler, G., Franke, L., Maurano, M. T., Wang, X., Mateo Leach, I., Eijgelsheim, M., Sotoodehnia, N., Hayward, C., Sorice, R., Meirelles, O., Lyytikäinen, L., Polašek, O., Tanaka, T., Arking, D. E., Ulivi, S., Trompet, S., Müller-Nurasyid, M., Smith, A. V., Dörr, M., Kerr, K. F., Magnani, J. W., Del Greco M, F., Zhang, W., Nolte, I. M., Silva, C. T., Padmanabhan, S., Tragante, V., Esko, T., Abecasis, G. R., Adriaens, M. E., Andersen, K., Barnett, P., Bis, J. C., Bodmer, R., Buckley, B. M., Campbell, H., Cannon, M. V., Chakravarti, A., Chen, L. Y., Delitala, A., Devereux, R. B., Doevendans, P. A., Dominiczak, A. F., Ferrucci, L., Ford, I., Gieger, C., Harris, T. B., Haugen, E., Heinig, M., Hernandez, D. G., Hillege, H. L., Hirschhorn, J. N., Hofman, A., Hubner, N., Hwang, S., Iorio, A., Kähönen, M., Kellis, M., Kolcic, I., Kooner, I. K., Kooner, J. S., Kors, J. A., Lakatta, E. G., Lage, K., Launer, L. J., Levy, D., Lundby, Alicia, Macfarlane, P. W., May, D., Meitinger, T., Metspalu, A., Nappo, S., Naitza, S., Neph, S., Nord, A. S., Nutile, T., Okin, P. M., Olsen, Jesper Velgaard, Oostra, B. A., Penninger, J. M., Pennacchio, L. A., Pers, Tune H, Perz, S., Peters, A., Pinto, Y. M., Pfeufer, A., Pilia, M. G., Pramstaller, P. P., Prins, B. P., Raitakari, O. T., Raychaudhuri, S., Rice, K. M., Rossin, E. J., Rotter, J. I., Schafer, S., Schlessinger, D., Schmidt, C. O., Sehmi, J., Silljé, H. H. W., Sinagra, G., Sinner, M. F., Slowikowski, K., Soliman, E. Z., Spector, T. D., Spiering, W., Stamatoyannopoulos, J. A., Stolk, R. P., Strauch, K., Tan, S., Tarasov, K. V., Trinh, B., Uitterlinden, A. G., van den Boogaard, M., van Duijn, C. M., van Gilst, W. H., Viikari, J. S., Visscher, P. M., Vitart, V., Völker, U., Waldenberger, M., Weichenberger, C. X., Westra, H., Wijmenga, C., Wolffenbuttel, B. H., Yang, J., Bezzina, C. R., Munroe, P. B., Snieder, H., Wright, A. F., Rudan, I., Boyer, L. A., Asselbergs, F. W., van Veldhuisen, D. J., Stricker, B. H., Psaty, B. M., Ciullo, M., Sanna, S., Lehtimäki, T., Wilson, J. F., Bandinelli, S., Alonso, A., Gasparini, P., Jukema, J. W., Kääb, S., Gudnason, V., Felix, S. B., Heckbert, S. R., de Boer, R. A., Newton-Cheh, C., Hicks, A. A., Chambers, J. C., Jamshidi, Y., Visel, A., Christoffels, V. M., Isaacs, A., Samani, N. J. & de Bakker, P. I. W., 27 Sep 2016, In : Journal of the American College of Cardiology. 68, 13, p. 1435-48 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

    den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J. J. M., Peal, D. S., Evans, D. M., Nolte, I. M., Segrè, A. V., Holm, H., Handsaker, R. E., Westra, H., Johnson, T., Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P., Bochud, M., Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst, P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J. P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T., O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T., Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H. M., Olsen, Jesper Velgaard & Global BPgen Consortium, G. B. C., 14 Apr 2013, In : Nature Genetics. 45, 6, p. 621-631 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    Rodrigues da Fonseca, Rute Andreia, Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, Bent, Peñaloza, F., Musacchia, F., Alexander, G. C., Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, Guojie, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In : GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Quantitation of Poly(ADP-Ribose) by Isotope Dilution Mass Spectrometry

    Zubel, T., Martello, R., Bürkle, A. & Mangerich, A., 2017, Poly(ADP-Ribose) Polymerase . Tulin, A. V. (ed.). Humana Press, Vol. 1608. p. 3-18 16 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  11. Published

    Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining

    Zong, D., Callén, E., Pegoraro, G., Lukas, Claudia, Lukas, Jiri & Nussenzweig, A., 26 May 2015, In : Nucleic Acids Research. 43, 10, p. 4950-61 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Quantitative Proteomic Analysis Reveals Synaptic Dysfunction in the Amygdala of Rats Susceptible to Chronic Mild Stress

    Zhou, M., Liu, Z., Yu, J., Li, S., Tang, M., Zeng, L., Wang, H., Xie, H., Peng, L., Huang, H., Zhou, C., Xie, P. & Zhou, J., 2018, In : Neuroscience. 376, p. 24-39 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Effective lock-in strategy for proteomic analysis of corona complexes bound to amino-free ligands of gold nanoparticles

    Zhou, M., Tang, M., Li, S., Peng, L., Huang, H., Fang, Q., Liu, Z., Xie, P., Li, G. & Zhou, J., 9 Jul 2018, In : Nanoscale. 10, 26, p. 12413-12423 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. E-pub ahead of print

    Mendelian randomization analysis does not support causal associations of birth weight with hypertension risk and blood pressure in adulthood

    Zheng, Y., Huang, T., Wang, T., Mei, Z., Sun, Z., Zhang, T., Ellervik, Christina, Chai, J., Sim, X., van Dam, R. M., Tai, E., Koh, W., Dorajoo, R., Saw, S., Sabanayagam, C., Wong, T. Y., Gupta, P., Rossing, Peter, Ahluwalia, T. S., Vinding, R. K., Bisgaard, Hans, Bønnelykke, Klaus, Wang, Y., Graff, M., Voortman, T., van Rooij, F. J. A., Hofman, A., van Heemst, D., Noordam, R., Estampador, A. C., V Varga, Tibor, Enzenbach, C., Scholz, M., Thiery, J., Burkhardt, R., Orho-Melander, M., Schulz, C., Ericson, U., Sonestedt, E., Kubo, M., Akiyama, M., Zhou, A., Oskari Kilpeläinen, Tuomas, Hansen, Torben, Kleber, M. E., Delgado, G., McCarthy, M., Lemaitre, R. N., Felix, J. F., Jaddoe, V. W. V., Wu, Y., Mohlke, K. L., Lehtimäki, T., Wang, C. A., Pennell, C. E., Schunkert, H., Kessler, T., Zeng, L., Willenborg, C., Peters, A., Lieb, W., Grote, V., Rzehak, P., Koletzko, B., Erdmann, J., Munz, M., Wu, T., He, M., Yu, C., Lecoeur, C., Froguel, P., Corella, D., Moreno, L. A., Lai, C., Pitkänen, N., Boreham, C. A., Ridker, P. M., Rosendaal, F. R., de Mutsert, R., Power, C., Paternoster, L., Sørensen, Thorkild I.A., Tjønneland, Anne, Overvad, K., Djousse, L., Rivadeneira, F., Lee, N. R., Raitakari, O. T., Kähönen, M., Viikari, J., Langhendries, J., Escribano, J., Verduci, E., Dedoussis, G., König, I., Balkau, B., Coltell, O., Dallongeville, J., Meirhaeghe, A., Amouyel, P., Gottrand, F., Pahkala, K., Niinikoski, H., Hyppönen, E., März, W., Mackey, D. A., Gruszfeld, D., Tucker, K. L., Fumeron, F., Estruch, R., Ordovas, J. M., Arnett, D. K., Mook-Kanamori, D. O., Mozaffarian, D., Psaty, B. M., North, K. E., Chasman, D. I. & Qi, L., 7 May 2020, In : European Journal of Epidemiology. 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Will Artificial Intelligence for Drug Discovery Impact Clinical Pharmacology?

    Zhavoronkov, A., Vanhaelen, Q. & Oprea, T. I., 2020, In : Clinical Pharmacology & Therapeutics. 107, 4, p. 780-785 6 p.

    Research output: Contribution to journalReviewResearchpeer-review

  16. Published

    A Multilaboratory Comparison of Calibration Accuracy and the Performance of External References in Analytical Ultracentrifugation

    Zhao, H., Ghirlando, R., Alfonso, C., Arisaka, F., Attali, I., Bain, D. L., Bakhtina, M. M., Becker, D. F., Bedwell, G. J., Bekdemir, A., Besong, T. M. D., Birck, C., Brautigam, C. A., Brennerman, W., Byron, O., Bzowska, A., Chaires, J. B., Chaton, C. T., Cölfen, H., Connaghan, K. D., Crowley, K. A., Curth, U., Daviter, T., Dean, W. L., Díez, A. I., Ebel, C., Eckert, D. M., Eisele, L. E., Eisenstein, E., England, P., Escalante, C., Fagan, J. A., Fairman, R., Finn, R. M., Fischle, W., de la Torre, J. G., Gor, J., Gustafsson, H., Hall, D., Harding, S. E., Cifre, J. G. H., Herr, A. B., Howell, E. E., Isaac, R. S., Jao, S., Jose, D., Kim, S., Kokona, B., Kornblatt, J. A., Kosek, D., Krayukhina, E., Krzizike, D., Kusznir, E. A., Kwon, H., Larson, A., Laue, T. M., Le Roy, A., Leech, A. P., Lilie, H., Luger, K., Luque-Ortega, J. R., Ma, J., May, C. A., Maynard, E. L., Modrak-Wojcik, A., Mok, Y., Mücke, N., Nagel-Steger, L., Narlikar, G. J., Noda, M., Nourse, A., Obsil, T., Park, C. K., Park, J., Pawelek, P. D., Perdue, E. E., Perkins, S. J., Perugini, M. A., Peterson, C. L., Peverelli, M. G., Piszczek, G., Prag, G., Prevelige, P. E., Raynal, B. D. E., Rezabkova, L., Richter, K., Ringel, A. E., Rosenberg, R., Rowe, A. J., Rufer, A. C., Scott, D. J., Seravalli, J. G., Solovyova, A. S., Song, R., Staunton, D., Stoddard, C., Stott, K., Strauss, H. M., Streicher, W. W., Sumida, J. P., Swygert, S. G., Szczepanowski, R. H., Tessmer, I., Toth, R. T., Tripathy, A., Uchiyama, S., Uebel, S. F. W., Unzai, S., Gruber, A. V., von Hippel, P. H., Wandrey, C., Wang, S., Weitzel, S. E., Wielgus-Kutrowska, B., Wolberger, C., Wolff, M., Wright, E., Wu, Y., Wubben, J. M. & Schuck, P., 21 May 2015, In : PLOS ONE. 10, 5, 30 p., e0126420.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism

    Zhao, B., Yang, Y., Wang, X., Chong, Z., Yin, R., Song, S., Zhao, C., Li, C., Huang, H., Sun, B., Wu, D., Jin, K., Song, M., Zhu, B., Jiang, G., Danielsen, J. M. R., Xu, G., Yang, Y. & Wang, H., Feb 2014, In : Nucleic Acids Research. 42, 3, p. 1593-1605 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Distinct domains in Bub1 localize RZZ and BubR1 to kinetochores to regulate the checkpoint

    Zhang, G., Lischetti, T., Hayward, D. G. & Nilsson, Jakob, 2 Jun 2015, In : Nature Communications. 6, 14 p., 7162.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    The Drosophila Microtubule-Associated Protein Mars Stabilizes Mitotic Spindles by Crosslinking Microtubules through Its N-Terminal Region

    Zhang, G., Beati, H., Nilsson, Jakob & Wodarz, A., 4 Apr 2013, In : P L o S One. 8, 4, p. e60596 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    The Ndc80 internal loop is required for recruitment of the Ska complex to establish end-on microtubule attachment to kinetochores

    Zhang, G., Kelstrup, C. D., Hu, X., Hansen, M. J. K., Singleton, M. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2012, In : Journal of Cell Science. p. 3243-3253 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Insights into mitotic checkpoint by integrating CRISPR and RNAi

    Zhang, G., 2019, In : Molecular & Cellular Oncology. 6, 4, 1603436.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The closed form of Mad2 is bound to Mad1 and Cdc20 at unattached kinetochores

    Zhang, G. & Nilsson, Jakob, 2018, In : Cell Cycle. 17, 9, p. 1087-1091

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signalling

    Zhang, G., Kruse, Thomas, López-Méndez, B., Sylvestersen, K. B., Garvanska, Dimitriya Hristoforova, Schopper, S., Nielsen, Michael Lund & Nilsson, Jakob, 12 Jun 2017, In : Nature Communications. 8, 12 p., 15822.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Two functionally distinct kinetochore pools of BubR1 ensure accurate chromosome segregation

    Zhang, G., Mendez, B. L., Sedgwick, G. G. & Nilsson, Jakob, 2016, In : Nature Communications. 7, p. 1-12 12 p., 12256.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    A minimal number of MELT repeats supports all functions of KNL1 in chromosome segregation

    Zhang, G., Lischetti, T. & Nilsson, Jakob, 20 Dec 2013, In : Journal of Cell Science. 127, p. 871-884

    Research output: Contribution to journalJournal articleResearchpeer-review

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