The NNF Center for Protein Research

  1. Published

    Genomic Characterization of Cyanophage vB_AphaS-CL131Infecting Filamentous Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Reveals Novel Insights into Virus-Bacterium Interactions

    Šulčius, S., Šimoliūnas, E., Alzbutas, G., Gasiūnas, G., Jauniškis, V., Kuznecova, J., Miettinen, S., Nilsson, E., Meškys, R., Roine, E., Paškauskas, R. & Holmfeldt, K., 2019, In : Applied and Environmental Microbiology. 85, 1, 19 p., e01311-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    RNF8 and RNF168 but not HERC2 are required for DNA damage-induced ubiquitylation in chicken DT40 cells

    Østergaard, Vibe Hallundbæk, Pentzold, C., Pedersen, R. T., Iosif, S., Alpi, A., Bekker-Jensen, Simon Holst, Mailand, Niels & Lisby, Michael, 2012, In : D N A Repair. 11, 11, p. 892–905 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation

    Østergaard, Ole, Follmann, F., Olsen, A. W., Heegaard, N. H., Andersen, P. & Rosenkrands, I., Dec 2016, In : Molecular and Cellular Proteomics. 15, 12, p. 3540-3550 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Proteome analysis of barley seeds: Identification of major proteins from two-dimensional gels (pI 4-7)

    Østergaard, Ole, Finnie, C. S., Laugesen, S., Roepstorff, P. & Svensson, B., 2004, In : Proteomics. 4, p. 2437-2447 11 p., https://doi.org/10.1002/pmic.200300753.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Initial proteome analysis of mature barley seeds and malt

    Østergaard, Ole, Melchior, S., Roepstorff, P. & Svensson, B., Jun 2002, In : Proteomics. 2, 6, p. 733-9 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Recent findings and technological advances in phosphoproteomics for cells and tissues

    von Stechow, L., Francavilla, C. & Olsen, Jesper Velgaard, 2015, In : Expert Review of Proteomics. 12, 5, p. 469-87 19 p.

    Research output: Contribution to journalReviewResearchpeer-review

  7. Published

    Proteomics insights into DNA damage response and translating this knowledge to clinical strategies

    von Stechow, L. & Olsen, Jesper Velgaard, Feb 2017, In : Proteomics. 17, 3-4, 15 p., 1600018.

    Research output: Contribution to journalReviewResearchpeer-review

  8. Published

    European guidelines for quality assurance in colorectal cancer screening and diagnosis: overview and introduction to the full supplement publication

    von Karsa, L., Patnick, J., Segnan, N., Atkin, W., Halloran, S., Lansdorp-Vogelaar, I., Malila, N., Minozzi, S., Moss, S., Quirke, P., Steele, R. J., Vieth, M., Aabakken, L., Altenhofen, L., Ancelle-Park, R., Antoljak, N., Anttila, A., Armaroli, P., Arrossi, S., Austoker, J., Banzi, R., Bellisario, C., Blom, J., Brenner, H., Bretthauer, M., Camargo Cancela, M., Costamagna, G., Cuzick, J., Dai, M., Daniel, J., Dekker, E., Delicata, N., Ducarroz, S., Erfkamp, H., Espinàs, J. A., Faivre, J., Faulds Wood, L., Flugelman, A., Frkovic-Grazio, S., Geller, B., Giordano, L., Grazzini, G., Green, J., Hamashima, C., Herrmann, C., Hewitson, P., Hoff, G., Holten, I., Jover, R., Lynge, Elsebeth & European Colorectal Cancer Screening Guidelines Working Group, E. C. C. S. G. W. G., 1 Jan 2013, In : Gastroenterological Endoscopy. 45, 1, p. 51-9 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    52 Genetic Loci Influencing Myocardial Mass

    van der Harst, P., van Setten, J., Verweij, N., Vogler, G., Franke, L., Maurano, M. T., Wang, X., Mateo Leach, I., Eijgelsheim, M., Sotoodehnia, N., Hayward, C., Sorice, R., Meirelles, O., Lyytikäinen, L., Polašek, O., Tanaka, T., Arking, D. E., Ulivi, S., Trompet, S., Müller-Nurasyid, M., Smith, A. V., Dörr, M., Kerr, K. F., Magnani, J. W., Del Greco M, F., Zhang, W., Nolte, I. M., Silva, C. T., Padmanabhan, S., Tragante, V., Esko, T., Abecasis, G. R., Adriaens, M. E., Andersen, K., Barnett, P., Bis, J. C., Bodmer, R., Buckley, B. M., Campbell, H., Cannon, M. V., Chakravarti, A., Chen, L. Y., Delitala, A., Devereux, R. B., Doevendans, P. A., Dominiczak, A. F., Ferrucci, L., Ford, I., Gieger, C., Harris, T. B., Haugen, E., Heinig, M., Hernandez, D. G., Hillege, H. L., Hirschhorn, J. N., Hofman, A., Hubner, N., Hwang, S., Iorio, A., Kähönen, M., Kellis, M., Kolcic, I., Kooner, I. K., Kooner, J. S., Kors, J. A., Lakatta, E. G., Lage, K., Launer, L. J., Levy, D., Lundby, Alicia, Macfarlane, P. W., May, D., Meitinger, T., Metspalu, A., Nappo, S., Naitza, S., Neph, S., Nord, A. S., Nutile, T., Okin, P. M., Olsen, Jesper Velgaard, Oostra, B. A., Penninger, J. M., Pennacchio, L. A., Pers, Tune H, Perz, S., Peters, A., Pinto, Y. M., Pfeufer, A., Pilia, M. G., Pramstaller, P. P., Prins, B. P., Raitakari, O. T., Raychaudhuri, S., Rice, K. M., Rossin, E. J., Rotter, J. I., Schafer, S., Schlessinger, D., Schmidt, C. O., Sehmi, J., Silljé, H. H. W., Sinagra, G., Sinner, M. F., Slowikowski, K., Soliman, E. Z., Spector, T. D., Spiering, W., Stamatoyannopoulos, J. A., Stolk, R. P., Strauch, K., Tan, S., Tarasov, K. V., Trinh, B., Uitterlinden, A. G., van den Boogaard, M., van Duijn, C. M., van Gilst, W. H., Viikari, J. S., Visscher, P. M., Vitart, V., Völker, U., Waldenberger, M., Weichenberger, C. X., Westra, H., Wijmenga, C., Wolffenbuttel, B. H., Yang, J., Bezzina, C. R., Munroe, P. B., Snieder, H., Wright, A. F., Rudan, I., Boyer, L. A., Asselbergs, F. W., van Veldhuisen, D. J., Stricker, B. H., Psaty, B. M., Ciullo, M., Sanna, S., Lehtimäki, T., Wilson, J. F., Bandinelli, S., Alonso, A., Gasparini, P., Jukema, J. W., Kääb, S., Gudnason, V., Felix, S. B., Heckbert, S. R., de Boer, R. A., Newton-Cheh, C., Hicks, A. A., Chambers, J. C., Jamshidi, Y., Visel, A., Christoffels, V. M., Isaacs, A., Samani, N. J. & de Bakker, P. I. W., 27 Sep 2016, In : Journal of the American College of Cardiology. 68, 13, p. 1435-48 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

    den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J. J. M., Peal, D. S., Evans, D. M., Nolte, I. M., Segrè, A. V., Holm, H., Handsaker, R. E., Westra, H., Johnson, T., Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P., Bochud, M., Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst, P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J. P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T., O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T., Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H. M., Olsen, Jesper Velgaard & Global BPgen Consortium, G. B. C., 14 Apr 2013, In : Nature Genetics. 45, 6, p. 621-631 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    Rodrigues da Fonseca, Rute Andreia, Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, Bent, Peñaloza, F., Musacchia, F., Alexander, G. C., Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, Guojie, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In : GigaScience. 9, 1, giz152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Quantitation of Poly(ADP-Ribose) by Isotope Dilution Mass Spectrometry

    Zubel, T., Martello, R., Bürkle, A. & Mangerich, A., 2017, Poly(ADP-Ribose) Polymerase . Tulin, A. V. (ed.). Humana Press, Vol. 1608. p. 3-18 16 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  13. Published

    Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining

    Zong, D., Callén, E., Pegoraro, G., Lukas, Claudia, Lukas, Jiri & Nussenzweig, A., 26 May 2015, In : Nucleic Acids Research. 43, 10, p. 4950-61 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Quantitative Proteomic Analysis Reveals Synaptic Dysfunction in the Amygdala of Rats Susceptible to Chronic Mild Stress

    Zhou, M., Liu, Z., Yu, J., Li, S., Tang, M., Zeng, L., Wang, H., Xie, H., Peng, L., Huang, H., Zhou, C., Xie, P. & Zhou, J., 2018, In : Neuroscience. 376, p. 24-39 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Effective lock-in strategy for proteomic analysis of corona complexes bound to amino-free ligands of gold nanoparticles

    Zhou, M., Tang, M., Li, S., Peng, L., Huang, H., Fang, Q., Liu, Z., Xie, P., Li, G. & Zhou, J., 9 Jul 2018, In : Nanoscale. 10, 26, p. 12413-12423 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. E-pub ahead of print

    Mendelian randomization analysis does not support causal associations of birth weight with hypertension risk and blood pressure in adulthood

    Zheng, Y., Huang, T., Wang, T., Mei, Z., Sun, Z., Zhang, T., Ellervik, Christina, Chai, J., Sim, X., van Dam, R. M., Tai, E., Koh, W., Dorajoo, R., Saw, S., Sabanayagam, C., Wong, T. Y., Gupta, P., Rossing, Peter, Ahluwalia, T. S., Vinding, R. K., Bisgaard, Hans, Bønnelykke, Klaus, Wang, Y., Graff, M., Voortman, T., van Rooij, F. J. A., Hofman, A., van Heemst, D., Noordam, R., Estampador, A. C., V Varga, Tibor, Enzenbach, C., Scholz, M., Thiery, J., Burkhardt, R., Orho-Melander, M., Schulz, C., Ericson, U., Sonestedt, E., Kubo, M., Akiyama, M., Zhou, A., Oskari Kilpeläinen, Tuomas, Hansen, Torben, Kleber, M. E., Delgado, G., McCarthy, M., Lemaitre, R. N., Felix, J. F., Jaddoe, V. W. V., Wu, Y., Mohlke, K. L., Lehtimäki, T., Wang, C. A., Pennell, C. E., Schunkert, H., Kessler, T., Zeng, L., Willenborg, C., Peters, A., Lieb, W., Grote, V., Rzehak, P., Koletzko, B., Erdmann, J., Munz, M., Wu, T., He, M., Yu, C., Lecoeur, C., Froguel, P., Corella, D., Moreno, L. A., Lai, C., Pitkänen, N., Boreham, C. A., Ridker, P. M., Rosendaal, F. R., de Mutsert, R., Power, C., Paternoster, L., Sørensen, Thorkild I.A., Tjønneland, Anne, Overvad, K., Djousse, L., Rivadeneira, F., Lee, N. R., Raitakari, O. T., Kähönen, M., Viikari, J., Langhendries, J., Escribano, J., Verduci, E., Dedoussis, G., König, I., Balkau, B., Coltell, O., Dallongeville, J., Meirhaeghe, A., Amouyel, P., Gottrand, F., Pahkala, K., Niinikoski, H., Hyppönen, E., März, W., Mackey, D. A., Gruszfeld, D., Tucker, K. L., Fumeron, F., Estruch, R., Ordovas, J. M., Arnett, D. K., Mook-Kanamori, D. O., Mozaffarian, D., Psaty, B. M., North, K. E., Chasman, D. I. & Qi, L., 7 May 2020, In : European Journal of Epidemiology. 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    A Multilaboratory Comparison of Calibration Accuracy and the Performance of External References in Analytical Ultracentrifugation

    Zhao, H., Ghirlando, R., Alfonso, C., Arisaka, F., Attali, I., Bain, D. L., Bakhtina, M. M., Becker, D. F., Bedwell, G. J., Bekdemir, A., Besong, T. M. D., Birck, C., Brautigam, C. A., Brennerman, W., Byron, O., Bzowska, A., Chaires, J. B., Chaton, C. T., Cölfen, H., Connaghan, K. D., Crowley, K. A., Curth, U., Daviter, T., Dean, W. L., Díez, A. I., Ebel, C., Eckert, D. M., Eisele, L. E., Eisenstein, E., England, P., Escalante, C., Fagan, J. A., Fairman, R., Finn, R. M., Fischle, W., de la Torre, J. G., Gor, J., Gustafsson, H., Hall, D., Harding, S. E., Cifre, J. G. H., Herr, A. B., Howell, E. E., Isaac, R. S., Jao, S., Jose, D., Kim, S., Kokona, B., Kornblatt, J. A., Kosek, D., Krayukhina, E., Krzizike, D., Kusznir, E. A., Kwon, H., Larson, A., Laue, T. M., Le Roy, A., Leech, A. P., Lilie, H., Luger, K., Luque-Ortega, J. R., Ma, J., May, C. A., Maynard, E. L., Modrak-Wojcik, A., Mok, Y., Mücke, N., Nagel-Steger, L., Narlikar, G. J., Noda, M., Nourse, A., Obsil, T., Park, C. K., Park, J., Pawelek, P. D., Perdue, E. E., Perkins, S. J., Perugini, M. A., Peterson, C. L., Peverelli, M. G., Piszczek, G., Prag, G., Prevelige, P. E., Raynal, B. D. E., Rezabkova, L., Richter, K., Ringel, A. E., Rosenberg, R., Rowe, A. J., Rufer, A. C., Scott, D. J., Seravalli, J. G., Solovyova, A. S., Song, R., Staunton, D., Stoddard, C., Stott, K., Strauss, H. M., Streicher, W. W., Sumida, J. P., Swygert, S. G., Szczepanowski, R. H., Tessmer, I., Toth, R. T., Tripathy, A., Uchiyama, S., Uebel, S. F. W., Unzai, S., Gruber, A. V., von Hippel, P. H., Wandrey, C., Wang, S., Weitzel, S. E., Wielgus-Kutrowska, B., Wolberger, C., Wolff, M., Wright, E., Wu, Y., Wubben, J. M. & Schuck, P., 21 May 2015, In : PLOS ONE. 10, 5, 30 p., e0126420.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism

    Zhao, B., Yang, Y., Wang, X., Chong, Z., Yin, R., Song, S., Zhao, C., Li, C., Huang, H., Sun, B., Wu, D., Jin, K., Song, M., Zhu, B., Jiang, G., Danielsen, J. M. R., Xu, G., Yang, Y. & Wang, H., Feb 2014, In : Nucleic Acids Research. 42, 3, p. 1593-1605 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Distinct domains in Bub1 localize RZZ and BubR1 to kinetochores to regulate the checkpoint

    Zhang, G., Lischetti, T., Hayward, D. G. & Nilsson, Jakob, 2 Jun 2015, In : Nature Communications. 6, 14 p., 7162.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Response to Raaijmakers & Medema

    Zhang, G., Kruse, Thomas, Boldú, C. G., Garvanska, Dimitriya Hristoforova, Coscia, Fabian, Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In : The EMBO Journal. 38, 22, 5 p., e103547.

    Research output: Contribution to journalComment/debateResearch

  21. Published

    Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex

    Zhang, G., Kruse, Thomas, Guasch Boldú, C., Garvanska, Dimitriya Hristoforova, Coscia, Fabian, Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In : E M B O Journal. 38, 7, e100977.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The Drosophila Microtubule-Associated Protein Mars Stabilizes Mitotic Spindles by Crosslinking Microtubules through Its N-Terminal Region

    Zhang, G., Beati, H., Nilsson, Jakob & Wodarz, A., 4 Apr 2013, In : P L o S One. 8, 4, p. e60596 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    The Ndc80 internal loop is required for recruitment of the Ska complex to establish end-on microtubule attachment to kinetochores

    Zhang, G., Kelstrup, C. D., Hu, X., Hansen, M. J. K., Singleton, M. R., Olsen, Jesper Velgaard & Nilsson, Jakob, 2012, In : Journal of Cell Science. p. 3243-3253 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Insights into mitotic checkpoint by integrating CRISPR and RNAi

    Zhang, G., 2019, In : Molecular & Cellular Oncology. 6, 4, 1603436.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    The closed form of Mad2 is bound to Mad1 and Cdc20 at unattached kinetochores

    Zhang, G. & Nilsson, Jakob, 2018, In : Cell Cycle. 17, 9, p. 1087-1091

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signalling

    Zhang, G., Kruse, Thomas, López-Méndez, B., Sylvestersen, K. B., Garvanska, Dimitriya Hristoforova, Schopper, S., Nielsen, Michael Lund & Nilsson, Jakob, 12 Jun 2017, In : Nature Communications. 8, 12 p., 15822.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Two functionally distinct kinetochore pools of BubR1 ensure accurate chromosome segregation

    Zhang, G., Mendez, B. L., Sedgwick, G. G. & Nilsson, Jakob, 2016, In : Nature Communications. 7, p. 1-12 12 p., 12256.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    A minimal number of MELT repeats supports all functions of KNL1 in chromosome segregation

    Zhang, G., Lischetti, T. & Nilsson, Jakob, 20 Dec 2013, In : Journal of Cell Science. 127, p. 871-884

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

    Zepeda Mendoza, M. L., Roggenbuck, M., Manzano Vargas, K., Hansen, L. H., Brunak, Søren, Gilbert, M Thomas P & Sicheritz-Pontén, Thomas, 2018, In : Acta Veterinaria Scandinavica. 60, 1, p. 1-19 19 p., 61.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis

    Zanivan, S., Meves, A., Behrendt, K., Schoof, E., Neilson, L. J., Cox, J., Tang, H. R., Kalna, G., van Ree, J. H., van Deursen, J. M., Trempus, C. S., Machesky, L. M., Linding, R., Wickström, S. A., Fässler, R. & Mann, Matthias, 21 Feb 2013, In : Cell Reports. 3, 2, p. 552-566 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    SOCS2 deletion protects against hepatic steatosis but worsens insulin resistance in high-fat-diet-fed mice

    Zadjali, F., Santana-Farre, R., Vesterlund, M., Carow, B., Mirecki-Garrido, M., Hernandez-Hernandez, I., Flodström-Tullberg, M., Parini, P., Rottenberg, M., Norstedt, G., Fernandez-Perez, L. & Flores Morales, A., 2012, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 26, 8, p. 3282-91 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Structural basis for c-KIT inhibition by the suppressor of cytokine signaling 6 (SOCS6) ubiquitin ligase

    Zadjali, F., Pike, A. C. W., Vesterlund, M., Sun, J., Wu, C., Li, S. S. C., Rönnstrand, L., Knapp, S., Bullock, A. N. & Flores Morales, A., 2011, In : Journal of Biological Chemistry. 286, 1, p. 480-90 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Liver X receptor agonist downregulates growth hormone signaling in the liver

    Zadjali, F., Santana-Farre, R., Mirecki-Garrido, M., Ellis, E., Norstedt, G., Fernandez-Perez, L. & Flores-Morales, A., 1 Nov 2011, In : Hormone Molecular Biology and Clinical Investigation. 8, 2, p. 471-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Breast milk alkylglycerols sustain beige adipocytes through adipose tissue macrophages

    Yu, H., Dilbaz, S., Coßmann, J., Hoang, A. C., Diedrich, V., Herwig, A., Harauma, A., Hoshi, Y., Moriguchi, T., Landgraf, K., Körner, A., Lucas, C., Brodesser, S., Balogh, L., Thuróczy, J., Karemore, Gopal, Kuefner, M. S., Park, E. A., Rapp, C., Travers, J. B. & Röszer, T., 2019, In : The Journal of Clinical Investigation. 129, 6, p. 2485-2499

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Improved Reversed Phase Chromatography of Hydrophilic Peptides from Spatial and Temporal Changes in Column Temperature

    Young, C., Podtelejnikov, A. V. & Nielsen, Michael Lund, 2 Jun 2017, In : Journal of Proteome Research. 16, 6, p. 2307-2317 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Homologous and non-homologous sequence methods for assigning protein function

    Yeats, C., orengo, C., Veuthey, A. L., Boeckmann, B., Jensen, Lars Juhl, Valencia, A., Rausell, A. & Bork, P., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 213-238

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  37. Published

    Reevaluation of genetic variants previously associated with arrhythmogenic right ventricular cardiomyopathy integrating population-based cohorts and proteomics data

    Ye, J. Z., Delmar, M., Lundby, Alicia & Olesen, Morten Steen Salling, 2019, In : Clinical Genetics. 96, 6, p. 506-514

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Breast cancer cells with acquired antiestrogen resistance are sensitized to cisplatin-induced cell death

    Yde, C. W., Gyrd-Hansen, M., Lykkesfeldt, A. E., Issinger, O. & Stenvang, Jan, Jun 2007, In : Molecular Cancer Therapeutics. 6, 6, p. 1869-1876 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis

    Yarani, R., Palasca, O., Doncheva, Nadezhda Tsankova, Anthon, Christian, Pilecki, B., Litman, Thomas, Holmskov, U., Jensen, Lars Juhl, Gorodkin, Jan & Pociot, Flemming, 2019, In : Journal of Crohn's and Colitis. 13, p. S129-S130

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  40. Published

    Molecular genetic overlap between migraine and major depressive disorder

    Yang, Y., Zhao, H., Boomsma, D. I., Ligthart, L., Belin, A. C., Smith, G. D., Esko, T., Freilinger, T. M., Hansen, Thomas Folkmann, Ikram, M. A., Kallela, M., Kubisch, C., Paraskevi, C., Strachan, D. P., Wessman, M., Gormley, P., Anttila, V., Winsvold, B. S., Palta, P., Esko, T., Pers, Tune H, Farh, K. H., Cuenca-Leon, E., Muona, M., Furlotte, N. A., Kurth, T., Ingason, A., McMahon, G., Ligthart, L., Terwindt, G. M., Kallela, M., Freilinger, T. M., Ran, C., Gordon, S. G., Stam, A. H., Steinberg, S., Borck, G., Koiranen, M., Quaye, L., Adams, H. H. H., Lehtimäki, T., Sarin, A. P., Wedenoja, J., Hinds, D. A., Buring, J. E., Schürks, M., Christensen, A. F., Hansen, Thomas Folkmann, Werge, Thomas & Olesen, Jes, 2018, In : European Journal of Human Genetics. 26, 8, p. 1202-1216 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    ATR-Chk1-APC/C-dependent stabilization of Cdc7-ASK (Dbf4) kinase is required for DNA lesion bypass under replication stress

    Yamada, M., Watanabe, K., Mistrik, M., Vesela, E., Protivankova, I., Mailand, Niels, Lee, M. H., Masai, H., Lukas, Jiri & Bartek, J., 15 Nov 2013, In : Genes & Development. 27, 22, p. 2459-2472 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    XIAP Restricts TNF- and RIP3-Dependent Cell Death and Inflammasome Activation

    Yabal, M., Müller, N., Adler, H., Knies, N., Groß, C. J., Damgaard, R. B., Kanegane, H., Ringelhan, M., Kaufmann, T., Heikenwälder, M., Strasser, A., Groß, O., Ruland, J., Peschel, C., Gyrd-Hansen, M. & Jost, P. J., 26 Jun 2014, In : Cell Reports. 7, 6, p. 1796-1808

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Polyester based nanovehicles for siRNA delivery

    Xu, Z., Wang, Danyang, Cheng, Y., Yang, Mingshi & Wu, L., 2018, In : Materials Science and Engineering C: Materials for Biological Applications. 92, p. 1006-1015 10 p.

    Research output: Contribution to journalReviewResearchpeer-review

  44. Published

    Structural insights into the recognition of phosphopeptide by the FHA domain of kanadaptin

    Xu, Q., Deller, M. C., Nielsen, T. K., Grant, J. C., Lesley, S. A., Elsliger, M., Deacon, A. M. & Wilson, I. A., Sep 2014, In : PLOS ONE. 9, 9, 9 p., e107309.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Synthetic lethality between murine DNA repair factors XLF and DNA-PKcs is rescued by inactivation of Ku70

    Xing, M., Bjørås, M., Daniel, J. A., Alt, F. W. & Oksenych, V., Sep 2017, In : DNA Repair. 57, p. 133-138 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines Relevant for Genome Stability

    Xiao, Z., Chang, J., Hendriks, I. A., Sigurdsson, J. O., Olsen, Jesper Velgaard & Vertegaal, A. C. O., 1 May 2015, In : Molecular and Cellular Proteomics. 14, 5, p. 1419-1434

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Grand challenges in nanomedicine

    Wu, L., Wang, Danyang & Li, Z., 2020, In : Materials Science and Engineering C: Materials for Biological Applications. 106, 110302.

    Research output: Contribution to journalReviewResearchpeer-review

  48. Published

    A Genome-Wide Association Study of IVGTT-Based Measures of First Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants

    Wood, A. R., Jonsson, Anna Elisabet, Jackson, A. U., Wang, T., van Leewen, N., Palmer, N. D., Kobes, S., Deelen, J., Boquete-Vilarino, L., Paananen, J., Stančáková, A., Boomsma, D. I., de Geus, E. J., Eekhoff, E. M., Fritsche, A., Kramer, M., Nijpels, G., Simonis-Bik, A. M. C., van Haeften, T. W., Mahajan, A., Boehnke, M., Bergman, R. N., Tuomilehto, J., Collins, F. S., Mohlke, K. L., Banasik, Karina, Groves, C. J., McCarthy, M. I., Pearson, E. R., Natali, A., Mari, A., Buchanan, T. A., Taylor, K. D., Xiang, A. H., Gjesing, Anette Marianne Prior, Grarup, Niels, Eiberg, Hans Rudolf Lytchoff, Pedersen, Oluf Borbye, Chen, Y., Laakso, M., Norris, J. M., Smith, U., Wagenknecht, L. E., Baier, L., Bowden, D. W., Hansen, Torben, Walker, M., Watanabe, R. M., 't Hart, L. M., Hanson, R. L. & Frayling, T. M., 2017, In : Diabetes. 66, 8, p. 2296-2309

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Functional and Structural Properties of a Novel Protein and Virulence Factor (sHIP) in Streptococcus pyogenes

    Wisniewska, M., Happonen, L., Kahn, F., Varjosalo, M., Malmström, L., Rosenberger, G., Karlsson, C., Cazzamali, G., Pozdnyakova, I., Frick, I., Björck, L., Streicher, W., Malmström, J. & Wikström, M., 13 May 2014, In : The Journal of Biological Chemistry. 289, p. 18175-18188

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study

    Winkler, T. W., Justice, A. E., Graff, M., Barata, L., Feitosa, M. F., Chu, S., Czajkowski, J., Esko, T., Fall, T., Oskari Kilpeläinen, Tuomas, Lu, Y., Mägi, R., Mihailov, E., Pers, T. H., Rüeger, S., Teumer, A., Ehret, G. B., Ferreira, T., Heard-Costa, N. L., Karjalainen, J., Lagou, V., Mahajan, A., Neinast, M. D., Prokopenko, I., Simino, J., Teslovich, T. M., Jansen, R., Westra, H., White, C. C., Absher, D., Ahluwalia, T. V. S., Ahmad, S., Albrecht, E., Alves, A. C., Bragg-Gresham, J. L., de Craen, A. J. M., Bis, J. C., Bonnefond, A., Boucher, G., Banasik, Karina, Grarup, Niels, Hansen, Torben, Jørgensen, T., Krarup, N. T., Linneberg, Allan René, Ribel-Madsen, R., Sparsø, T. H., Melbye, Mads, Pedersen, Oluf Borbye, Sørensen, Thorkild I.A. & CHARGE Consortium, C. C., 1 Oct 2015, In : P L o S Genetics. 11, 10, p. 1-42 42 p., e1005378.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells

    Winge, S. B., Dalgaard, M. D., Belling, Kirstine G, Jensen, J. M., Nielsen, J. E., Aksglaede, L., Schierup, M. H., Brunak, Søren, Skakkebæk, Niels Erik, Juul, Anders, Rajpert-De Meyts, E. & Almstrup, K., 2018, In : Cell Death & Disease. 9, 6, 14 p., 586.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

    Windeløv, Johanne Agerlin, Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Jepsen, Sara Lind, Hornburg, D., Pedersen, J., Jensen, E. P., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Ørgaard, A., Deacon, Carolyn F., Mann, Matthias, Kissow, Hannelouise, Hartmann, Bolette & Holst, Jens Juul, Oct 2017, In : Diabetologia. 60, 10, p. 2066-2075 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration

    Wilman, H. R., Parisinos, C. A., Atabaki-Pasdar, N., Kelly, M., Thomas, E. L., Neubauer, S., Jennison, C., Ehrhardt, B., Baum, P., Schoelsch, C., Freijer, J., Grempler, R., Graefe-Mody, U., Hennige, A., Dings, C., Lehr, T., Scherer, N., Sihinecich, I., Pattou, F., Raverdi, V., Caiazzo, R., Torres, F., Verkindt, H., Mari, A., Tura, A., Giorgino, T., Bizzotto, Froguel, P., Brorsson, Caroline Anna, Brunak, Søren, De Masi, F., Pedersen, H., Banasik, Karina, Thomas, C., Lundgaard, Agnete Troen, Nielsen, A., Mazzoni, Gianluca, Karaderi, Tugce, Rasmussen, Simon, Johansen, Joachim, Allesøe, Rosa Lundbye, Arumugam, Mani, Allin, Kristine Højgaard, Hansen, Torben, Hansen, Tue Haldor, Jonsson, Anna Elisabet, Pedersen, Oluf Borbye, Dutta, Avirup, Vogt, J., Vestergaard, Henrik & IMI-DIRECT consortium, I. C., 2019, In : Journal of Hepatology. 71, 3, p. 594-602 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    TGIF1 is a negative regulator of MLL-rearranged acute myeloid leukemia

    Willer, A., Jakobsen, J. S., Ohlsson, E., Rapin, N., Waage, J., Billing, M., Bullinger, L., Karlsson, S. & Porse, Bo Torben, 2015, In : Leukemia. 29, p. 1018-31 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    The Spindle Assembly Checkpoint Is Not Essential for Viability of Human Cells with Genetically Lowered APC/C Activity

    Wild, T., Larsen, M. S. Y., Narita, Takeo, Schou, J., Nilsson, Jakob & Choudhary, Chuna Ram, 1 Mar 2016, In : Cell Reports. 14, 8, p. 1829-40 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint

    Wild, T., Budzowska, Magdalena, Hellmuth, S., Eibes, S., Karemore, Gopal, Barisic, Marin, Stemmann, O. & Choudhary, Chuna Ram, 2018, In : Cell Reports. 25, 9, 18 p., 2317-2328.e5.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth

    Wild, P., Farhan, H., McEwan, D. G., Wagner, S., Rogov, V. V., Brady, N. R., Richter, B., Korac, J., Waidmann, O., Choudhary, Chuna Ram, Dötsch, V., Bumann, D. & Dikic, I., 8 Jul 2011, In : Science. 333, 6039, p. 228-33 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Citrullination of HP1γ chromodomain affects association with chromatin

    Wiese, M., Bannister, A. J., Basu, S., Boucher, W., Wohlfahrt, K., Christophorou, M. A., Nielsen, Michael Lund, Klenerman, D., Laue, E. D. & Kouzarides, T., 2019, In : Epigenetics & Chromatin. 12, 17 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    MaxQuant.Live enables global targeting of more than 25,000 peptides

    Wichmann, C., Meier, F., Virreira Winter, S., Brunner, A., Cox, J. & Mann, Matthias, 2019, In : Molecular and Cellular Proteomics. 18, 5, p. 982-994 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Antimicrobial resistance: Standardisation and harmonisation of laboratory methodologies for the detection and quantification of antimicrobial resistance

    White, D. G., Acar, J., Anthony, F., Franklin, A., Gupta, R., Nicholls, T., Tamura, Y., Thompson, S., Threlfall, E. J., Vose, D., Van Vuuren, M., Wegener, H. C. & Costarrica, M. L., 1 Jan 2001, In : OIE Revue Scientifique et Technique. 20, 3, p. 849-858 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery

    Albrechtsen, Nicolai Jacob Wewer, Geyer, P. E., Doll, S., Treit, P. V., Bojsen-Møller, K. N., Martinussen, C., Jørgensen, N. B., Torekov, Signe Sørensen, Meier, F., Niu, Lili, Santos Delgado, Alberto, Keilhauer, E. C., Holst, Jens Juul, Madsbad, Sten & Mann, Matthias, 2018, In : Cell Systems. 7, 6, p. 601-612

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published
  63. Published

    Sacubitril/Valsartan Augments Postprandial Plasma Concentrations of Active GLP-1 When Combined With Sitagliptin in Men

    Albrechtsen, Nicolai Jacob Wewer, Mark, P. D., Terzic, D., Hansen, L. H., Andersen, U. Ø., Hartmann, Bolette, Carr, R. D., Gustafsson, Finn, Deacon, Carolyn F., Holst, Jens Juul, Goetze, Jens P. & Plomgaard, Peter Stendahl, 2019, In : Journal of Clinical Endocrinology and Metabolism. 104, 9, p. 3868-3876

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    The liver-alpha cell axis and type 2 diabetes

    Albrechtsen, Nicolai Jacob Wewer, Pedersen, J., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Suppli, M. P., Janah, L., Gromada, J., Vilstrup, H., Knop, Filip Krag & Holst, Jens Juul, 2019, In : Endocrine Reviews. 40, 5, p. 1353-1366

    Research output: Contribution to journalReviewResearchpeer-review

  65. Published

    A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

    Westergaard, David, Stærfeldt, H., Tønsberg, C., Jensen, Lars Juhl & Brunak, Søren, 2018, In : PLoS Computational Biology. 14, 2, 16 p., e1005962.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Population-wide analysis of differences in disease progression patterns in men and women

    Westergaard, David, Moseley, Pope Lloyd, Sørup, F. K. H., Baldi, P. & Brunak, Søren, 2019, In : Nature Communications. 10, 1, 14 p., 666.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia

    Wesolowska, A., Gautier, L., Weinhold, N., Audouze, K. M. L., Brunak, Søren, Sicheritz-Ponten, T., Gupta, R., Dalgaard, M. D., Nielsen, B. F., Leffers, H., Borst, L., Helt, L. R., Nersting, J., Schmiegelow, Kjeld, Bak, Mads & Tommerup, Niels, 1 Jun 2011, In : Leukemia. 25, 6, p. 1001-1006 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Retinoic Acid Signaling in Thymic Epithelial Cells Regulates Thymopoiesis

    Wendland, K., Niss, Kristoffer, Kotarsky, K., Wu, N. Y. H., White, A. J., Jendholm, L. J., Rivollier, A., Izarzugaza, J. M. G., Brunak, Søren, Holländer, G. A., Anderson, G., Sitnik, K. M. & Agace, W. W., 2018, In : Journal of Immunology. 201, 2, p. 524-532 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Androgen receptor signalling in peritubular myoid cells is essential for normal differentiation and function of adult Leydig cells

    Welsh, M., Moffat, L., Belling, Kirstine G, de França, L. R., Segatelli, T. M., Saunders, P. T. K., Sharpe, R. M. & Smith, L. B., Feb 2012, In : International Journal of Andrology. Supplement. 35, 1, p. 25-40 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Enamel proteome shows that Gigantopithecus was an early diverging pongine

    Welker, Frido, Ramos Madrigal, Jazmin, Kuhlwilm, M., Liao, W., Gutenbrunner, P., de Manuel, M., Samodova, Diana, Mackie, Meaghan, Allentoft, Morten Erik, Bacon, A., Collins, Matthew James, Cox, J., Lalueza-Fox, C., Olsen, Jesper Velgaard, Demeter, Fabrice, Wang, W., Marques-Bonet, T. & Cappellini, Enrico, 2019, In : Nature. 576, p. 262-265

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    The dental proteome of Homo antecessor

    Welker, Frido, Ramos Madrigal, Jazmin, Gutenbrunner, P., Mackie, Meaghan, Tiwary, S., Rakownikow Jersie-Christensen, R., Chiva, C., Dickinson, M. R., Kuhlwilm, M., de Manuel, M., Gelabert, P., Martinón-Torres, M., Margvelashvili, A., Arsuaga, J. L., Carbonell, E., Marques-Bonet, T., Penkman, K., Sabidó, E., Cox, J., Olsen, Jesper Velgaard, Lordkipanidze, D., Racimo, Fernando, Lalueza-Fox, C., Bermúdez de Castro, J. M., Willerslev, Eske & Cappellini, Enrico, Apr 2020, In : Nature. 580, 7802, p. 235-238 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Ancient proteins resolve the evolutionary history of Darwin's South American ungulates

    Welker, Frido, Collins, Matthew James, Thomas, J. A., Wadsley, M., Brace, S., Cappellini, Enrico, Turvey, S. T., Reguero, M., Gelfo, J. N., Kramarz, A., Burger, J., Thomas-Oates, J., Ashford, D. A., Ashton, P. D., Rowsell, K., Porter, D. M., Kessler, B., Fischer, R., Baessmann, C., Kaspar, S., Olsen, Jesper Velgaard, Kiley, P., Elliott, J. A., Kelstrup, C. D., Mullin, V., Hofreiter, M., Willerslev, Eske, Hublin, J., Orlando, Ludovic Antoine Alexandre, Barnes, I. & MacPhee, R. D. E., 4 Jun 2015, In : Nature. 522, 7554, p. 81–84 4 p.

    Research output: Contribution to journalLetterResearchpeer-review

  73. Published

    Palaeoproteomic analysis of Early Pleistocene Gigantopithecus blacki

    Welker, Frido, Ramos Madrigal, Jazmin, Wang, W., Kuhlwilm, M., Montero, M. D. M., Demeter, Fabrice, Lalueza-Fox, C., Marques-Bonet, T., Olsen, Jesper Velgaard & Cappellini, Enrico, Mar 2019, In : American Journal of Physical Anthropology. 168, suppl. 68, p. 265-266

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  74. Published

    The phosphoproteome of toll-like receptor-activated macrophages

    Weintz, G., Olsen, Jesper Velgaard, Frühauf, K., Niedzielska, M., Amit, I., Jantsch, J., Mages, J., Frech, C., Dölken, L., Mann, M. & Lang, R., 8 Jun 2010, In : Molecular Systems Biology. 6, p. 371

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome

    Weinert, B. T., Satpathy, S., Hansen, B. K., Lyon, D., Jensen, Lars Juhl & Choudhary, Chuna Ram, May 2017, In : Molecular and Cellular Proteomics. 16, p. 759-769

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae

    Weinert, B. T., Iesmantavicius, V., Moustafa, T., Schölz, C., Wagner, S. A., Magnes, C., Zechner, R. & Choudhary, Chuna Ram, 31 Jan 2014, In : Molecular Systems Biology. 10, 1, p. 716 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome

    Weinert, B. T., Narita, Takeo, Satpathy, S., Srinivasan, Balaji, Hansen, B. K., Schölz, C., Hamilton, William, Zucconi, B. E., Wang, W. W., Liu, W. R., Brickman, Joshua Mark, Kesicki, E. A., Lai, A., Bromberg, K. D., Cole, P. A. & Choudhary, Chuna Ram, 2018, In : Cell. 174, 1, p. 231-244.e12 27 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions

    Weinert, B. T., Moustafa, T., Iesmantavicius, V., Zechner, R. & Choudhary, Chuna Ram, 3 Nov 2015, In : E M B O Journal. 34, 21, p. 2620-2632 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation

    Weinert, B. T., Schölz, C., Wagner, S. A., Iesmantavicius, V., Su, D., Daniel, J. A. & Choudhary, Chuna Ram, 29 Aug 2013, In : Cell Reports. 4, 4, p. 842-51 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli

    Weinert, B. T., Iesmantavicius, V., Wagner, S. A., Schölz, C., Gummesson, Bertil, Beli, P., Nyström, T. & Choudhary, Chuna Ram, 25 Jul 2013, In : Molecular Cell. 51, 2, p. 265-272 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation

    Weinert, B. T., Wagner, S. A., Horn, H., Henriksen, P., Liu, W. R., Olsen, Jesper Velgaard, Jensen, Lars Juhl & Choudhary, Chuna Ram, 2011, In : Science Signaling. 4, 183, p. ra48

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    A role for small RNAs in DNA double-strand break repair

    Wei, W., Ba, Z., Wu, Y., Ma, Y., Qi, Y., Gao, M., Danielsen, J. M. R., Yang, Y., Amiard, S. & White, C. I., 30 Mar 2012, In : Cell. 149, 1, p. 101-112 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington

    Waters, M. R., Stafford jr., T., McDonald, H. G., Gustafson, C., Rasmussen, M., Cappellini, Enrico, Olsen, Jesper Velgaard, Szklarczyk, D. M., Jensen, Lars Juhl, Gilbert, M Thomas P & Willerslev, Eske, 2011, In : Science. 334, 6054, p. 351-353 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    JMJD1C demethylates MDC1 to regulate the RNF8 and BRCA1-mediated chromatin response to DNA breaks

    Watanabe, S., Watanabe, K., Akimov, V., Bartkova, J., Blagoev, B., Lukas, Jiri & Bartek, J., 17 Nov 2013, In : Nature Structural and Molecular Biology. 20, p. 1425-1433

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines

    Warrer, P., Jensen, P. B., Aagaard, L., Jensen, Lars Juhl, Brunak, S., Krag, M. H., Rossing, P., Almdal, T., Andersen, H. U. & Hansen, E. H., 20 May 2015, In : Journal of Research in Pharmacy Practice. 4, 2, p. 64-72 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    Using text-mining techniques in electronic patient records to identify ADRs from medicine use

    Warrer, P., Hansen, E. H., Jensen, Lars Juhl & Aagaard, L., May 2012, In : British Journal of Clinical Pharmacology. 73, 5, p. 674-684 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Pathogens and host immunity in the ancient human oral cavity

    Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, Lars Hestbjerg, Samaniego Castruita, J. A., Barkow-Oesterreicher, S., Teoh, K. Y., Kelstrup, C., Olsen, Jesper Velgaard, Nanni, P., Kawai, T., Willerslev, Eske, von Mering, C., Lewis, C. M., Collins, M. J., Gilbert, M Thomas P, Rühli, F. & Cappellini, Enrico, 2014, In : Nature Genetics. 46, p. 336-344 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Direct evidence of milk consumption from ancient human dental calculus

    Warinner, C., Hendy, J., Speller, C., Cappellini, Enrico, Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, Niels, Craig, O., Swallow, D. M., Fotaki, Anna Katerina, Christensen, R. J., Olsen, Jesper Velgaard, Liebert, A., Montalva, N., Fiddyment, S., Mackie, M., Canci, A., Bouwman, A., Ruhli, F., Gilbert, M Thomas P & Collins, M. J., 2015, In : American Journal of Physical Anthropology. 156, Suppl. 60, p. 319 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  89. Published

    Direct evidence of milk consumption from ancient human dental calculus

    Warinner, C., Hendy, J., Speller, C., Cappellini, Enrico, Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, Niels, Craig, O. E., Swallow, D. M., Fotaki, Anna Katerina, Jersie-Christensen, R. R., Olsen, Jesper Velgaard, Liebert, A., Montalva, N., Fiddyment, S., Charlton, S., Mackie, Meaghan, Canci, A., Bouwman, A., Rühli, F., Gilbert, M Thomas P & Collins, M. J., 2014, In : Scientific Reports. 4, 6 p., 7104.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Production of functional human insulin-like growth factor binding proteins (IGFBPs) using recombinant expression in HEK293 cells

    Wanscher, A. S. M., Williamson, M., Ebersole, T. W., Streicher, W., Wikström, M. & Cazzamali, G., Apr 2015, In : Protein Expression and Purification. 108, p. 97-105 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment

    Wang, X., Garvanska, Dimitriya Hristoforova, Nasa, I., Ueki, Yumi, Zhang, G., Kettenbach, A. N., Peti, W., Nilsson, Jakob & Page, R., 20 Mar 2020, In : eLife. 9

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. Published

    Overview of the interactive task in BioCreative V

    Wang, Q., S Abdul, S., Almeida, L., Ananiadou, S., Balderas-Martínez, Y. I., Batista-Navarro, R., Campos, D., Chilton, L., Chou, H., Contreras, G., Cooper, L., Dai, H., Ferrell, B., Fluck, J., Gama-Castro, S., George, N., Gkoutos, G., Irin, A. K., Jensen, Lars Juhl, Jimenez, S., Jue, T. R., Keseler, I., Madan, S., Matos, S., McQuilton, P., Milacic, M., Mort, M., Natarajan, J., Pafilis, E., Pereira, E., Rao, S., Rinaldi, F., Rothfels, K., Salgado, D., Silva, R. M., Singh, O., Stefancsik, R., Su, C., Subramani, S., Tadepally, H. D., Tsaprouni, L., Vasilevsky, N., Wang, X., Chatr-Aryamontri, A., Laulederkind, S. J. F., Matis-Mitchell, S., McEntyre, J., Orchard, S., Pundir, S., Rodriguez-Esteban, R., Van Auken, K., Lu, Z., Schaeffer, M., Wu, C. H., Hirschman, L. & Arighi, C. N., 2016, In : Database. 2016, 18 p., baw119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    qcML: an exchange format for quality control metrics from mass spectrometry experiments

    Walzer, M., Pernas, L. E., Nasso, S., Bittremieux, W., Nahnsen, S., Kelchtermans, P., Pichler, P., van den Toorn, H. W. P., Staes, A., Vandenbussche, J., Mazanek, M., Taus, T., Scheltema, R. A., Kelstrup, C. D., Gatto, L., van Breukelen, B., Aiche, S., Valkenborg, D., Laukens, K., Lilley, K. S., Olsen, Jesper Velgaard, Heck, A. J. R., Mechtler, K., Aebersold, R., Gevaert, K., Vizcaino, J. A., Hermjakob, H., Kohlbacher, O. & Martens, L., 23 Apr 2014, In : Molecular & Cellular Proteomics. 13, 8, p. 1905-1913 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    Yeast expression proteomics by high-resolution mass spectrometry

    Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In : Methods in Enzymology. 470, p. 259-80 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    Protein expression changes in ovarian cancer during the transition from benign to malignant

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Malmström, J. & James, P., 4 May 2012, In : Journal of Proteome Research. 11, 5, p. 2876-89 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

    Wagner, S. A., Beli, P., Weinert, B. T., Nielsen, Michael Lund, Cox, J., Mann, Matthias & Choudhary, Chuna Ram, 1 Oct 2011, In : Molecular and Cellular Proteomics. 10, 10, p. M111.013284

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Proteomic analyses reveal divergent ubiquitylation site patterns in murinetissues

    Wagner, S. A., Beli, P., Weinert, B. T., Schölz, C. F., Kelstrup, C. D., Young, C., Nielsen, Michael Lund, Olsen, Jesper Velgaard, Brakebusch, Cord Herbert & Choudhary, Chuna Ram, 2012, In : Molecular & Cellular Proteomics.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes

    Wagner, S. A., Satpathy, S., Beli, P. & Choudhary, Chuna Ram, 1 Sep 2016, In : E M B O Journal. 35, 17, p. 1868-1884

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    RNF4 is required for DNA double-strand break repair in vivo

    Vyas, R., Kumar, R., Clermont, F., Helfricht, A., Kalev, P., Sotiropoulou, P., Hendriks, I. A., Radaelli, E., Hochepied, T., Blanpain, C., Sablina, A., van Attikum, H., Olsen, Jesper Velgaard, Jochemsen, A. G., Vertegaal, A. C. O. & Marine, J., Mar 2013, In : Cell Death and Differentiation. 20, 3, p. 490-502 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Antimicrobial resistance: Risk analysis methodology for the potential impact on public health of antimicrobial resistant bacteria of animal origin

    Vose, D., Acar, J., Anthony, F., Franklin, A., Gupta, R., Nicholls, T., Tamura, Y., Thompson, S., Threlfall, E. J., Van Vuuren, M., Whiten, D. G., Wegener, H. C. & Costarrica, M. L., 1 Jan 2001, In : OIE Revue Scientifique et Technique. 20, 3, p. 811-827 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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