Disease Systems Biology Program

  1. 2019
  2. E-pub ahead of print

    SignalP 5.0 improves signal peptide predictions using deep neural networks. / Almagro Armenteros, José Juan; Tsirigos, Konstantinos D; Sønderby, Casper Kaae; Petersen, Thomas Nordahl; Winther, Ole; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Biotechnology, 18.02.2019.

    Research output: Contribution to journalJournal articleCommunication

  3. E-pub ahead of print

    Release of transcriptional repression via ErbB2-induced, SUMO-directed phosphorylation of myeloid zinc finger-1 serine 27 activates lysosome redistribution and invasion. / Brix, Ditte Marie; Tvingsholm, Siri Amanda; Hansen, Malene Bredahl; Clemmensen, Knut Bundgaard; Ohman, Tiina; Siino, Valentina; Lambrughi, Matteo; Hansen, Klaus; Puustinen, Pietri; Gromova, Irina; James, Peter; Papaleo, Elena; Varjosalo, Markku; Moreira, José; Jäättelä, Marja; Kallunki, Tuula.

    In: Oncogene, 08.01.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    A Guide to Dictionary-Based Text Mining. / Cook, Helen V; Jensen, Lars Juhl.

    In: Methods in molecular biology (Clifton, N.J.), Vol. 1939, 2019, p. 73-89.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism. / Cuesta-Astroz, Yesid; Santos, Alberto; Oliveira, Guilherme; Jensen, Lars J.

    In: Frontiers in Immunology, Vol. 10, 2019, p. 212.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Cytoscape stringApp : Network analysis and visualization of proteomics data. / Doncheva, Nadezhda T; Morris, John; Gorodkin, Jan; Jensen, Lars J.

    In: Journal of Proteome Research, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Bone Status in Obese, Non-diabetic, Antipsychotic-Treated Patients, and Effects of the Glucagon-Like Peptide-1 Receptor Agonist Exenatide on Bone Turnover Markers and Bone Mineral Density. / Eriksson, Robert; Broberg, Brian, V; Ishoy, Pelle L.; Bak, Nikolaj; Andersen, Ulrik B.; Jorgensen, Niklas R.; Knop, Filip K.; Ebdrup, Bjorn H.

    In: Frontiers in Psychiatry, Vol. 9, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation. / Hansen, Bogi Karbech; Gupta, Rajat; Baldus, Linda; Lyon, David; Narita, Takeo; Lammers, Michael; Choudhary, Chunaram; Weinert, Brian T.

    In: Nature Communications, Vol. 10, No. 1, 05.03.2019, p. 1055.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A large-cohort, longitudinal study determines pre-cancer disease routes across different cancer types. / Hu, Jessica X; Helleberg, Marie; Jensen, Anders B; Brunak, Søren; Lundgren, Jens.

    In: Cancer Research, Vol. 79, No. 4, 2019, p. 864-872.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    eggNOG 5.0 : a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. / Huerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernández-Plaza, Ana; Forslund, Sofia K; Cook, Helen; Mende, Daniel R; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J; von Mering, Christian; Bork, Peer.

    In: Nucleic Acids Research, Vol. 47, No. D1, 2019, p. D309-D314.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. E-pub ahead of print

    Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men. / Jiang, Li; Audouze, Karine; Romero Herrera, Jose Alejandro; Ängquist, Lars Henrik; Kjærulff, Sonny Kim; Izarzugaza, Jose M G; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Sørensen, Thorkild I A; Brunak, Søren.

    In: Clinical Nutrition, 14.02.2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

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